Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5W68	8778	2023-05-16	2017-06-16	3.3	3.84	—	4.0	0.006	0.89	0.0	0.06	10.33	0.01	2.206	8.50	0.69	8.5	91.5	0.0	-5.31	0.73	0.78	2.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39390	5250	15	0	0	0	0	logfile
✘	6U0M	20607	2023-05-16	2019-08-14	3.9	4.53	—	4.3	0.005	1.05	2.0	0.06	16.74	0.01	2.211	9.80	0.47	13.2	86.7	0.2	-5.28	0.81	0.63	-0.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41146	5105	16	34	3	0	0	logfile
✘	5GJW	9515	2023-05-09	2016-07-02	3.9	4.02	—	4.0	0.012	1.51	20.0	0.08	11.56	0.01	1.844	12.82	1.50	12.8	85.5	1.7	-5.28	0.55	0.80	1.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21561	2676	14	0	29	0	0	logfile
✘	5VKQ	8702	2023-05-16	2017-04-22	3.55	3.85	3.58	3.6	0.008	1.18	0.0	0.05	11.89	0.01	2.057	11.24	0.72	8.9	90.8	0.3	-5.28	0.83	0.77	1.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41900	5996	8	0	32	0	0	logfile
✘	7K10	22619	2023-05-04	2020-09-06	3.3	3.44	—	3.4	0.006	0.98	0.0	0.05	15.43	0.01	2.300	4.19	0.37	10.6	89.3	0.1	-5.28	0.72	0.77	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10037	1259	1	0	0	0	0	logfile
✘	7D44	30569	2023-05-12	2020-09-22	4.0	4.14	—	4.0	0.006	0.86	0.0	0.05	14.78	0.00	2.049	20.50	0.28	16.3	83.6	0.1	-5.25	0.80	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28391	3825	12	0	0	0	0	logfile
✘	7K1J	22624	2023-05-15	2020-09-07	3.9	3.96	—	3.9	0.010	1.24	0.0	0.07	17.63	0.01	2.066	7.83	1.09	14.5	85.0	0.5	-5.24	0.68	0.71	1.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38040	4600	7	74	0	0	0	logfile
✘	6XP5	22284	2023-05-09	2020-07-08	4.2	4.73	—	4.3	0.004	0.90	0.0	0.05	14.32	0.00	2.131	14.90	0.27	15.9	83.2	0.9	-5.23	0.79	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21065	2707	15	0	221	0	0	logfile
✘	6UT7	20868	2023-05-17	2019-10-29	4.26	4.38	4.21	4.3	0.005	0.84	0.0	0.06	14.74	0.01	2.117	5.40	0.44	5.8	94.2	0.0	-5.22	0.74	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45062	5522	26	4	20	0	0	logfile
✘	6F0K	4165	2023-05-16	2017-11-20	3.87	3.98	—	3.9	0.022	1.29	0.0	0.14	11.89	0.01	1.943	8.80	0.00	14.2	85.8	0.0	-5.22	0.65	0.72	1.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39868	2504	10	0	10	0	19577	logfile
✘	6LRS	0960	2023-05-12	2020-01-16	3.37	2.99	—	3.4	0.006	1.04	0.0	0.06	10.05	0.01	2.260	10.82	0.38	6.7	93.3	0.0	-5.21	0.63	0.74	2.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30156	3832	12	0	0	0	0	logfile
✘	6W1J	21511	2023-05-07	2020-03-04	2.92	3.34	2.83	3.2	0.010	1.17	0.0	0.10	10.28	0.01	2.337	2.46	0.82	5.6	94.4	0.0	-5.20	0.76	0.88	4.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16861	1965	25	0	41	0	0	logfile
✘	5WC3	8795	2023-05-06	2017-06-29	3.5	3.53	—	3.5	0.015	1.18	0.0	0.06	9.37	0.01	1.925	12.86	0.00	8.0	90.5	1.5	-5.20	0.79	0.76	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65880	4170	30	0	0	0	33390	logfile
✘	6JRR	9879	2023-05-03	2019-04-05	3.9	4.09	—	3.9	0.010	1.14	4.0	0.06	15.90	0.01	1.827	8.44	0.80	10.2	89.5	0.2	-5.20	0.76	0.81	1.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	109132	14268	12	0	16	0	0	logfile
✘	6SWC	10322	2023-05-09	2019-09-20	3.3	4.36	3.31	3.3	0.015	0.97	0.0	0.05	16.16	0.04	1.823	9.66	0.13	13.4	86.6	0.0	-5.19	0.83	0.72	1.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	70744	4519	48	1593	41	42	0	logfile
✘	6EZ8	3984	2023-05-08	2017-11-14	4.0	4.07	—	4.1	0.007	1.29	0.0	0.06	11.10	0.01	2.277	4.82	0.83	6.1	93.6	0.3	-5.17	0.61	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20491	2621	2	0	0	0	0	logfile
✘	6WHT	21675	2023-05-08	2020-04-08	4.39	5.00	—	4.6	0.006	0.85	0.0	0.05	12.85	0.01	1.983	23.64	0.63	17.3	82.3	0.3	-5.16	0.65	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20532	3082	10	0	8	0	0	logfile
✘	7Ji3	22343	2023-05-03	2020-07-22	3.46	4.28	—	4.0	0.005	0.79	0.0	0.05	13.46	0.01	2.365	6.77	0.00	3.6	96.4	0.0	-5.13	0.64	0.72	2.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6000	777	3	0	0	0	0	logfile
✘	7S5Y	24843	2023-05-09	2021-09-12	3.9	4.28	—	4.1	0.010	1.48	4.0	0.08	17.61	0.01	2.160	5.99	7.41	5.3	94.7	0.1	-5.12	0.64	0.81	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21106	2686	5	0	4	0	0	logfile
✘	7X0X	32928	2023-05-12	2022-02-22	2.56	3.09	2.66	3.0	0.008	1.00	0.0	0.06	15.31	0.01	2.280	3.83	1.15	4.7	95.3	0.0	-5.09	0.74	0.82	4.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15680	1904	8	0	4	0	0	logfile

• ← previous
• Page 3 of 55
• next →