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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5W68 | 8778 | 2023-05-16 | 2017-06-16 | 3.3 | 3.84 | — | 4.0 | 0.006 | 0.89 | 0.0 | 0.06 | 10.33 | 0.01 | 2.206 | 8.50 | 0.69 | 8.5 | 91.5 | 0.0 | -5.31 | 0.73 | 0.78 | 2.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39390 | 5250 | 15 | 0 | 0 | 0 | 0 | logfile |
✘ | 6U0M | 20607 | 2023-05-16 | 2019-08-14 | 3.9 | 4.53 | — | 4.3 | 0.005 | 1.05 | 2.0 | 0.06 | 16.74 | 0.01 | 2.211 | 9.80 | 0.47 | 13.2 | 86.7 | 0.2 | -5.28 | 0.81 | 0.63 | -0.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41146 | 5105 | 16 | 34 | 3 | 0 | 0 | logfile |
✘ | 5GJW | 9515 | 2023-05-09 | 2016-07-02 | 3.9 | 4.02 | — | 4.0 | 0.012 | 1.51 | 20.0 | 0.08 | 11.56 | 0.01 | 1.844 | 12.82 | 1.50 | 12.8 | 85.5 | 1.7 | -5.28 | 0.55 | 0.80 | 1.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21561 | 2676 | 14 | 0 | 29 | 0 | 0 | logfile |
✘ | 5VKQ | 8702 | 2023-05-16 | 2017-04-22 | 3.55 | 3.85 | 3.58 | 3.6 | 0.008 | 1.18 | 0.0 | 0.05 | 11.89 | 0.01 | 2.057 | 11.24 | 0.72 | 8.9 | 90.8 | 0.3 | -5.28 | 0.83 | 0.77 | 1.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41900 | 5996 | 8 | 0 | 32 | 0 | 0 | logfile |
✘ | 7K10 | 22619 | 2023-05-04 | 2020-09-06 | 3.3 | 3.44 | — | 3.4 | 0.006 | 0.98 | 0.0 | 0.05 | 15.43 | 0.01 | 2.300 | 4.19 | 0.37 | 10.6 | 89.3 | 0.1 | -5.28 | 0.72 | 0.77 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10037 | 1259 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7D44 | 30569 | 2023-05-12 | 2020-09-22 | 4.0 | 4.14 | — | 4.0 | 0.006 | 0.86 | 0.0 | 0.05 | 14.78 | 0.00 | 2.049 | 20.50 | 0.28 | 16.3 | 83.6 | 0.1 | -5.25 | 0.80 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28391 | 3825 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7K1J | 22624 | 2023-05-15 | 2020-09-07 | 3.9 | 3.96 | — | 3.9 | 0.010 | 1.24 | 0.0 | 0.07 | 17.63 | 0.01 | 2.066 | 7.83 | 1.09 | 14.5 | 85.0 | 0.5 | -5.24 | 0.68 | 0.71 | 1.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38040 | 4600 | 7 | 74 | 0 | 0 | 0 | logfile |
✘ | 6XP5 | 22284 | 2023-05-09 | 2020-07-08 | 4.2 | 4.73 | — | 4.3 | 0.004 | 0.90 | 0.0 | 0.05 | 14.32 | 0.00 | 2.131 | 14.90 | 0.27 | 15.9 | 83.2 | 0.9 | -5.23 | 0.79 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21065 | 2707 | 15 | 0 | 221 | 0 | 0 | logfile |
✘ | 6UT7 | 20868 | 2023-05-17 | 2019-10-29 | 4.26 | 4.38 | 4.21 | 4.3 | 0.005 | 0.84 | 0.0 | 0.06 | 14.74 | 0.01 | 2.117 | 5.40 | 0.44 | 5.8 | 94.2 | 0.0 | -5.22 | 0.74 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 45062 | 5522 | 26 | 4 | 20 | 0 | 0 | logfile |
✘ | 6F0K | 4165 | 2023-05-16 | 2017-11-20 | 3.87 | 3.98 | — | 3.9 | 0.022 | 1.29 | 0.0 | 0.14 | 11.89 | 0.01 | 1.943 | 8.80 | 0.00 | 14.2 | 85.8 | 0.0 | -5.22 | 0.65 | 0.72 | 1.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39868 | 2504 | 10 | 0 | 10 | 0 | 19577 | logfile |
✘ | 6LRS | 0960 | 2023-05-12 | 2020-01-16 | 3.37 | 2.99 | — | 3.4 | 0.006 | 1.04 | 0.0 | 0.06 | 10.05 | 0.01 | 2.260 | 10.82 | 0.38 | 6.7 | 93.3 | 0.0 | -5.21 | 0.63 | 0.74 | 2.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30156 | 3832 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6W1J | 21511 | 2023-05-07 | 2020-03-04 | 2.92 | 3.34 | 2.83 | 3.2 | 0.010 | 1.17 | 0.0 | 0.10 | 10.28 | 0.01 | 2.337 | 2.46 | 0.82 | 5.6 | 94.4 | 0.0 | -5.20 | 0.76 | 0.88 | 4.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16861 | 1965 | 25 | 0 | 41 | 0 | 0 | logfile |
✘ | 5WC3 | 8795 | 2023-05-06 | 2017-06-29 | 3.5 | 3.53 | — | 3.5 | 0.015 | 1.18 | 0.0 | 0.06 | 9.37 | 0.01 | 1.925 | 12.86 | 0.00 | 8.0 | 90.5 | 1.5 | -5.20 | 0.79 | 0.76 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65880 | 4170 | 30 | 0 | 0 | 0 | 33390 | logfile |
✘ | 6JRR | 9879 | 2023-05-03 | 2019-04-05 | 3.9 | 4.09 | — | 3.9 | 0.010 | 1.14 | 4.0 | 0.06 | 15.90 | 0.01 | 1.827 | 8.44 | 0.80 | 10.2 | 89.5 | 0.2 | -5.20 | 0.76 | 0.81 | 1.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109132 | 14268 | 12 | 0 | 16 | 0 | 0 | logfile |
✘ | 6SWC | 10322 | 2023-05-09 | 2019-09-20 | 3.3 | 4.36 | 3.31 | 3.3 | 0.015 | 0.97 | 0.0 | 0.05 | 16.16 | 0.04 | 1.823 | 9.66 | 0.13 | 13.4 | 86.6 | 0.0 | -5.19 | 0.83 | 0.72 | 1.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 70744 | 4519 | 48 | 1593 | 41 | 42 | 0 | logfile |
✘ | 6EZ8 | 3984 | 2023-05-08 | 2017-11-14 | 4.0 | 4.07 | — | 4.1 | 0.007 | 1.29 | 0.0 | 0.06 | 11.10 | 0.01 | 2.277 | 4.82 | 0.83 | 6.1 | 93.6 | 0.3 | -5.17 | 0.61 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20491 | 2621 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6WHT | 21675 | 2023-05-08 | 2020-04-08 | 4.39 | 5.00 | — | 4.6 | 0.006 | 0.85 | 0.0 | 0.05 | 12.85 | 0.01 | 1.983 | 23.64 | 0.63 | 17.3 | 82.3 | 0.3 | -5.16 | 0.65 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20532 | 3082 | 10 | 0 | 8 | 0 | 0 | logfile |
✘ | 7Ji3 | 22343 | 2023-05-03 | 2020-07-22 | 3.46 | 4.28 | — | 4.0 | 0.005 | 0.79 | 0.0 | 0.05 | 13.46 | 0.01 | 2.365 | 6.77 | 0.00 | 3.6 | 96.4 | 0.0 | -5.13 | 0.64 | 0.72 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6000 | 777 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7S5Y | 24843 | 2023-05-09 | 2021-09-12 | 3.9 | 4.28 | — | 4.1 | 0.010 | 1.48 | 4.0 | 0.08 | 17.61 | 0.01 | 2.160 | 5.99 | 7.41 | 5.3 | 94.7 | 0.1 | -5.12 | 0.64 | 0.81 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21106 | 2686 | 5 | 0 | 4 | 0 | 0 | logfile |
✘ | 7X0X | 32928 | 2023-05-12 | 2022-02-22 | 2.56 | 3.09 | 2.66 | 3.0 | 0.008 | 1.00 | 0.0 | 0.06 | 15.31 | 0.01 | 2.280 | 3.83 | 1.15 | 4.7 | 95.3 | 0.0 | -5.09 | 0.74 | 0.82 | 4.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15680 | 1904 | 8 | 0 | 4 | 0 | 0 | logfile |