Table showing results for February 2025

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NTM	12591	2025-02-14	2021-03-10	2.86	3.19	2.97	2.8	0.013	1.61	7.0	0.10	15.61	0.00	1.962	17.08	1.77	6.2	93.8	0.0	-3.56	0.98	0.97	4.63	2.8	0.003	0.53	0.0	0.04	15.93	0.00	2.045	3.06	0.65	1.9	98.1	0.0	0.11	0.69	0.99	0.97	5.25	10336	1388	8	0	8	0	0	logfile
✔	7YC8	33736	2025-02-12	2022-07-01	4.14	7.25	4.31	4.1	0.002	0.51	0.0	0.02	25.12	0.00	2.079	18.05	0.00	0.0	0.0	0.0	—	0.96	0.87	—	4.1	0.006	0.82	0.0	0.04	27.70	0.01	1.970	59.75	0.00	0.0	0.0	0.0	—	1.25	0.97	0.89	—	8335	0	2	388	1	0	0	logfile
✔	8RK4	19259	2025-02-12	2023-12-23	4.74	6.78	6.17	3.7	0.003	0.72	0.0	0.05	11.12	0.00	0.995	21.20	0.00	4.0	95.7	0.3	-1.38	0.94	0.75	—	3.8	0.002	0.67	0.0	0.04	11.73	0.00	2.474	8.31	0.00	7.4	92.4	0.3	-1.77	0.86	0.94	0.77	—	8373	1119	3	0	0	0	0	logfile
✔	6VSA	21373	2025-02-13	2020-02-10	2.32	3.14	—	2.5	0.013	2.26	75.0	0.16	18.03	0.01	2.048	13.16	4.44	2.3	97.7	0.0	-1.58	0.94	0.94	4.86	2.6	0.003	0.56	0.0	0.04	17.40	0.00	2.620	7.97	1.55	0.1	99.8	0.1	0.71	1.14	0.93	0.90	4.33	9712	1175	10	0	0	42	0	logfile
✔	7YCG	33738	2025-02-13	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	24.46	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.008	0.69	0.0	0.04	24.55	0.00	1.842	30.51	0.00	0.0	0.0	0.0	—	0.33	0.95	0.89	—	8661	0	3	404	4	0	0	logfile
✔	7PMD	13529	2025-02-14	2021-09-02	2.9	4.01	2.83	3.4	0.012	1.06	1.0	0.06	15.52	0.01	1.728	3.61	0.09	0.2	99.8	0.0	-1.33	0.94	0.88	3.40	3.4	0.003	0.64	0.0	0.04	15.50	0.00	2.003	4.64	0.65	1.4	98.6	0.0	1.99	1.25	0.93	0.87	2.80	10189	1264	7	0	6	0	0	logfile
✔	7ZT6	14955	2025-02-12	2022-05-09	3.5	4.70	3.59	3.9	0.006	0.71	0.0	0.05	13.21	0.00	2.203	14.00	0.70	3.9	96.1	0.0	0.29	0.93	0.88	2.12	3.9	0.004	0.66	0.0	0.04	14.33	0.00	2.454	9.40	0.93	2.7	97.3	0.0	0.81	0.73	0.93	0.88	1.94	8073	1031	3	0	1	0	0	logfile
✔	8Z7B	39811	2025-02-14	2024-04-19	3.3	2.94	3.27	1.4	0.003	0.47	0.0	0.04	13.47	0.00	2.279	5.18	2.96	2.9	97.1	0.0	-2.05	0.93	0.88	3.76	1.4	0.004	0.73	0.0	0.05	13.64	0.00	2.497	6.67	2.66	4.2	95.8	0.0	-0.04	1.96	0.95	0.92	3.22	9580	1145	13	0	24	0	0	logfile
✔	8G12	29659	2025-02-14	2023-02-01	2.17	3.50	2.16	2.8	0.006	0.87	0.0	0.05	14.96	0.01	2.394	5.72	0.38	4.3	95.7	0.0	-1.26	0.93	0.93	4.11	2.8	0.003	0.56	0.0	0.04	15.34	0.01	2.584	2.02	0.58	3.0	97.0	0.0	0.72	0.30	0.94	0.95	4.93	9980	1336	4	0	0	0	0	logfile
✔	8TJU	41311	2025-02-14	2023-07-24	3.46	4.75	3.48	3.4	0.006	0.67	0.0	0.04	25.59	0.01	1.874	27.33	0.00	0.0	0.0	0.0	—	0.93	0.86	—	3.4	0.008	0.71	0.0	0.04	24.83	0.01	1.789	23.91	0.00	0.0	0.0	0.0	—	0.46	0.94	0.91	—	8771	0	2	409	27	0	0	logfile
✔	7YCi	33740	2025-02-13	2022-07-01	2.98	4.31	3.09	3.2	0.002	0.48	0.0	0.02	24.35	0.00	1.521	15.79	0.00	0.0	0.0	0.0	—	0.93	0.84	—	3.3	0.009	0.74	0.0	0.04	24.66	0.01	1.830	25.93	0.00	0.0	0.0	0.0	—	0.96	0.95	0.90	—	8474	0	3	395	4	0	0	logfile
✔	6V1i	21012	2025-02-14	2019-11-20	3.8	4.10	3.68	3.8	0.007	0.90	0.0	0.04	9.43	0.01	2.433	1.82	0.00	1.5	98.5	0.0	-3.88	0.93	0.89	1.99	3.8	0.003	0.67	0.0	0.04	14.65	0.00	2.429	5.80	2.66	1.5	98.5	0.0	4.64	0.83	0.93	0.89	1.26	9711	1233	9	0	0	0	0	logfile
✔	8EFE	28081	2025-02-12	2022-09-08	3.8	4.45	3.82	3.8	0.002	0.52	0.0	0.04	14.48	0.00	1.948	8.30	0.52	3.8	96.2	0.0	1.15	0.93	0.82	1.08	3.8	0.004	0.62	0.0	0.04	16.17	0.00	1.922	9.07	1.17	4.5	95.5	0.0	0.69	0.46	0.93	0.84	1.07	7135	886	3	0	2	0	0	logfile
✔	7ZZ0	15030	2025-02-11	2022-05-25	2.26	2.63	2.22	2.1	0.004	0.71	0.0	0.05	16.82	0.00	2.149	3.28	1.96	1.9	98.1	0.0	-0.34	0.92	0.91	4.41	2.1	0.003	0.54	0.0	0.04	16.73	0.00	2.077	3.39	2.40	1.9	98.1	0.0	1.44	0.23	0.92	0.91	4.43	4387	541	2	0	2	84	0	logfile
✔	9CXF	45988	2025-02-11	2024-07-31	3.02	3.58	3.03	3.3	0.006	0.68	0.0	0.04	25.40	0.00	1.874	7.88	0.00	0.0	0.0	0.0	—	0.92	0.90	—	3.3	0.008	0.72	0.0	0.04	24.51	0.00	1.792	5.56	0.00	0.0	0.0	0.0	—	0.38	0.93	0.92	—	4318	0	2	200	22	0	0	logfile
✔	7PMi	13535	2025-02-14	2021-09-02	3.3	4.20	3.27	3.2	0.014	1.17	2.0	0.07	15.80	0.01	1.733	5.04	0.09	0.2	99.8	0.0	-1.50	0.92	0.84	2.97	3.2	0.003	0.67	0.0	0.04	15.59	0.00	1.951	5.34	0.28	1.4	98.6	0.0	1.84	0.67	0.94	0.88	2.57	10189	1264	7	0	6	0	0	logfile
✔	9J8P	61237	2025-02-11	2024-08-21	3.21	3.65	—	1.5	0.006	0.90	0.0	0.05	20.97	0.01	2.235	10.53	0.00	5.4	94.6	0.0	-0.46	0.92	0.83	1.79	1.5	0.003	0.69	0.0	0.04	21.55	0.00	2.366	11.76	1.55	3.3	96.7	0.0	0.54	2.59	0.93	0.86	1.34	7061	623	3	106	1	0	0	logfile
✔	7PMG	13532	2025-02-14	2021-09-02	3.3	4.20	3.27	3.2	0.014	1.18	2.0	0.07	15.70	0.01	1.727	4.64	0.09	0.2	99.8	0.0	-1.37	0.92	0.85	3.45	3.3	0.003	0.62	0.0	0.04	15.56	0.00	1.938	5.24	0.55	1.3	98.7	0.0	2.04	1.67	0.94	0.89	2.79	10189	1264	7	0	6	0	0	logfile
✔	8BLQ	16113	2025-02-13	2022-11-10	3.97	5.74	4.01	3.9	0.002	0.55	0.0	0.04	12.20	0.00	2.201	11.99	0.10	4.9	95.1	0.0	-3.81	0.92	0.71	1.20	3.9	0.003	0.64	0.0	0.04	14.04	0.00	2.566	14.36	1.36	5.8	94.2	0.0	-1.90	1.14	0.94	0.80	1.20	9210	1220	5	0	0	0	0	logfile
✔	7PLT	13501	2025-02-14	2021-09-01	3.3	3.94	3.24	3.4	0.014	1.15	1.0	0.07	14.64	0.01	1.727	4.16	0.00	0.2	99.8	0.0	-1.61	0.92	0.87	3.10	3.5	0.004	0.64	0.0	0.04	15.59	0.00	1.937	5.65	1.39	1.0	99.0	0.0	1.76	0.63	0.91	0.88	2.29	10148	1264	6	0	3	0	0	logfile

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