Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Z1X	39739	2025-02-14	2024-04-12	3.2	2.35	3.21	2.1	0.019	2.02	43.0	1.50	13.05	0.01	1.925	0.41	0.00	1.2	98.8	0.0	-1.03	0.69	0.73	4.07	2.1	0.013	2.33	0.0	0.45	15.69	0.00	2.320	5.63	2.33	1.4	98.6	0.0	1.02	0.55	0.81	0.81	2.90	9648	1240	6	0	3	0	0	logfile
✔	8DJM	27461	2025-02-12	2022-07-01	3.23	3.66	3.31	3.6	0.029	1.53	2.0	1.04	32.65	0.00	1.844	8.23	0.82	3.7	96.3	0.0	-2.26	0.49	0.75	3.22	3.7	0.003	1.34	0.0	0.14	21.02	0.00	2.597	4.89	1.23	2.7	97.3	0.0	1.49	0.51	0.60	0.83	2.23	7032	862	7	0	8	0	0	logfile
✔	8DJK	27460	2025-02-12	2022-06-30	3.33	3.77	3.32	3.7	0.029	1.52	1.0	1.03	32.03	0.01	1.327	7.25	0.82	5.0	95.0	0.0	-1.84	0.48	0.73	2.65	3.7	0.007	1.41	0.0	0.14	21.02	0.00	2.499	6.05	1.77	4.1	95.9	0.0	0.97	0.94	0.62	0.80	2.24	7091	870	7	0	8	0	0	logfile
✔	7URC	26708	2025-02-11	2022-04-21	3.14	3.74	3.25	3.6	0.018	1.00	0.0	0.88	25.59	0.00	2.248	10.09	0.00	3.5	96.5	0.0	-3.02	0.58	0.86	3.34	3.6	0.005	1.12	0.0	0.12	18.29	0.00	2.614	6.03	1.25	3.9	96.1	0.0	0.77	1.24	0.57	0.87	2.72	5561	658	4	0	12	0	0	logfile
✔	7URD	26709	2025-02-11	2022-04-21	2.92	3.41	2.97	3.3	0.017	0.95	0.0	0.83	26.24	0.00	2.177	10.24	0.00	5.0	95.0	0.0	-2.44	0.59	0.86	3.86	3.3	0.003	1.10	0.0	0.12	19.75	0.00	2.506	4.66	1.56	3.9	96.1	0.0	1.17	0.94	0.55	0.85	3.28	5534	678	5	0	6	0	0	logfile
✔	7URE	26710	2025-02-11	2022-04-21	3.19	3.51	3.25	3.4	0.017	0.78	0.0	0.78	25.75	0.00	2.118	9.65	0.00	5.7	94.3	0.0	-2.27	0.60	0.85	3.70	3.4	0.003	1.11	0.0	0.12	20.09	0.00	2.416	4.92	1.72	4.7	95.3	0.0	0.98	0.92	0.62	0.87	3.15	5450	678	6	0	3	0	0	logfile
✔	8GS8	34225	2025-02-13	2022-09-05	2.86	3.07	2.83	3.1	0.032	1.67	0.0	0.52	14.96	0.01	2.168	12.06	0.67	7.9	92.1	0.1	-4.22	0.62	0.84	3.93	3.1	0.004	1.07	0.0	0.06	16.09	0.00	1.808	7.69	0.78	2.4	97.6	0.0	0.89	0.83	0.61	0.86	3.65	8637	1090	8	0	7	0	0	logfile
✔	7D6V	30594	2025-02-13	2020-10-02	2.53	2.74	—	2.7	0.031	1.56	2.0	0.50	14.91	0.01	2.186	9.57	0.00	9.6	90.3	0.1	-0.92	0.76	0.88	4.90	2.7	0.004	1.06	1.0	0.06	16.28	0.01	1.800	5.59	1.99	8.9	91.1	0.0	-0.20	0.33	0.72	0.89	3.90	8793	1104	6	0	7	0	0	logfile
✔	8K6J	36920	2025-02-13	2023-07-25	2.77	3.51	2.84	3.3	0.030	1.26	0.0	0.49	17.76	0.01	2.130	8.32	2.49	4.1	95.9	0.0	0.88	0.76	0.86	3.44	3.3	0.003	1.06	0.0	0.06	17.29	0.00	1.793	6.95	1.93	4.2	95.8	0.0	0.95	0.27	0.74	0.84	3.45	8580	1087	5	0	6	0	0	logfile
✔	7DSL	30837	2025-02-12	2020-12-31	2.9	3.28	—	3.2	0.013	1.26	0.0	0.49	22.64	0.01	2.055	6.20	1.14	9.1	90.0	0.9	-3.74	0.70	0.86	2.36	3.2	0.004	1.23	0.0	0.11	20.69	0.00	2.338	5.80	1.77	7.5	92.5	0.0	0.61	1.21	0.68	0.86	1.91	7522	935	8	0	12	8	0	logfile
✔	8JEK	36191	2025-02-13	2023-05-16	2.7	2.98	2.75	3.0	0.031	1.34	0.0	0.49	17.13	0.01	2.178	7.68	1.69	5.0	95.0	0.0	0.19	0.66	0.87	4.50	3.0	0.006	1.12	0.0	0.07	17.03	0.01	1.790	6.50	2.26	5.2	94.7	0.1	0.27	0.22	0.67	0.87	4.13	8623	1089	5	0	6	0	0	logfile
✔	8JEJ	36190	2025-02-13	2023-05-16	2.5	2.72	2.51	2.8	0.030	1.34	0.0	0.49	18.65	0.01	2.165	7.23	2.60	4.3	95.7	0.0	0.11	0.69	0.88	5.00	2.8	0.003	1.09	0.0	0.06	17.88	0.01	1.806	6.10	2.14	4.3	95.6	0.1	0.70	0.24	0.69	0.88	4.87	8604	1089	5	0	6	0	0	logfile
✔	7DSK	30835	2025-02-12	2020-12-31	2.9	3.17	—	3.2	0.011	1.12	0.0	0.49	23.27	0.01	1.969	4.94	0.63	8.2	91.3	0.5	-3.42	0.69	0.86	2.76	3.2	0.003	1.19	0.0	0.11	20.48	0.00	2.501	5.27	2.15	6.9	93.1	0.0	0.93	0.57	0.69	0.86	2.26	7524	935	8	0	12	12	0	logfile
✔	8XCN	38248	2025-02-13	2023-12-09	3.02	3.72	3.09	3.7	0.030	1.66	0.0	0.49	18.74	0.01	1.241	23.11	2.15	5.4	94.6	0.0	-0.97	0.73	0.74	1.11	3.6	0.004	1.13	0.0	0.06	17.51	0.01	1.621	13.99	3.50	4.5	95.4	0.1	0.42	1.17	0.74	0.83	2.21	8601	1089	5	0	6	0	0	logfile
✔	7DSQ	30841	2025-02-12	2020-12-31	3.4	3.49	—	3.5	0.010	1.19	0.0	0.49	22.62	0.01	2.292	5.94	0.89	8.8	90.3	0.9	-4.52	0.64	0.82	1.74	3.5	0.003	1.24	0.0	0.11	21.44	0.00	2.455	6.27	2.41	8.5	91.5	0.0	-0.07	1.23	0.65	0.83	1.52	7507	935	8	0	11	15	0	logfile
✔	7DSN	30839	2025-02-12	2020-12-31	3.1	3.18	—	3.1	0.012	1.14	0.0	0.49	22.16	0.01	2.132	8.24	1.52	6.7	92.4	1.0	-4.42	0.67	0.82	2.39	3.2	0.003	1.23	0.0	0.11	20.95	0.00	2.408	6.33	1.77	6.4	93.2	0.3	-0.27	1.62	0.68	0.84	2.07	7534	935	8	0	12	17	0	logfile
✔	8K6K	36921	2025-02-13	2023-07-25	2.4	3.06	2.44	2.9	0.031	1.35	0.0	0.48	17.79	0.01	2.147	7.53	2.15	4.1	95.9	0.0	0.87	0.76	0.90	4.69	2.9	0.004	1.09	0.0	0.06	17.50	0.00	1.803	6.82	1.36	4.3	95.7	0.0	0.94	0.22	0.76	0.90	4.51	8593	1088	5	0	6	0	0	logfile
✔	8XCM	38247	2025-02-13	2023-12-09	3.08	3.84	3.13	3.7	0.030	1.33	0.0	0.46	17.72	0.01	2.118	18.72	0.68	4.8	95.2	0.0	-0.04	0.75	0.83	2.38	3.7	0.004	1.07	0.0	0.06	17.71	0.00	1.804	12.56	4.18	4.6	95.4	0.0	0.39	0.46	0.74	0.83	2.36	8605	1089	5	0	6	0	0	logfile
✔	7D6X	30595	2025-02-13	2020-10-02	2.88	3.17	—	3.1	0.032	1.74	4.0	0.41	14.91	0.01	1.988	10.06	0.22	11.7	88.1	0.3	-2.90	0.74	0.88	3.52	3.1	0.004	1.08	0.0	0.06	16.27	0.01	1.781	5.99	2.89	9.8	90.2	0.0	-1.16	0.33	0.72	0.88	3.32	8711	1097	6	0	6	0	0	logfile
✔	7Yi9	33854	2025-02-11	2022-07-15	2.6	2.91	2.69	2.9	0.004	0.65	0.0	0.40	14.61	0.00	2.115	9.72	0.00	5.0	95.0	0.0	-0.81	0.63	0.75	3.34	2.9	0.004	0.62	0.0	0.04	17.72	0.00	2.153	8.01	2.77	4.5	95.5	0.0	-0.48	1.96	0.64	0.78	3.11	5226	634	5	0	1	0	0	logfile

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