Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CD0	16565	2025-02-12	2023-01-29	2.42	2.00	—	2.8	0.007	1.25	0.0	0.07	17.39	0.01	2.122	3.48	2.03	3.7	96.3	0.0	-3.15	0.67	0.70	1.80	2.8	0.003	0.65	0.0	0.04	17.52	0.00	2.347	10.50	3.25	3.4	96.6	0.0	-0.04	0.86	0.70	0.73	2.21	6860	837	5	1	1	4	0	logfile
✔	8XCT	38254	2025-02-11	2023-12-10	2.87	3.06	—	3.0	0.009	1.09	0.0	0.06	16.21	0.01	2.278	4.37	5.00	2.2	97.8	0.0	1.25	0.45	0.88	4.06	3.0	0.003	0.53	0.0	0.04	16.43	0.00	2.474	4.22	0.88	2.9	96.9	0.2	1.65	1.73	0.45	0.90	4.16	3358	417	2	0	1	28	0	logfile
✔	8ZWH	60527	2025-02-10	2024-06-13	2.5	3.26	—	3.0	0.011	0.91	0.0	0.06	9.45	0.00	2.284	18.21	0.00	3.8	96.2	0.0	-4.12	0.42	0.85	2.37	3.0	0.002	0.52	0.0	0.05	11.71	0.00	2.631	6.43	1.32	5.0	95.0	0.0	-3.24	1.17	0.43	0.85	3.74	2268	330	6	0	0	0	0	logfile
✔	8JiM	36318	2025-02-13	2023-05-26	2.98	2.35	—	3.2	0.007	0.91	0.0	0.05	13.51	0.00	2.232	10.37	0.41	5.8	94.2	0.1	-1.91	0.75	0.79	2.75	3.2	0.003	0.65	0.0	0.04	16.10	0.00	2.543	5.94	2.03	3.4	96.6	0.0	-0.36	1.00	0.76	0.82	2.27	9051	1144	6	0	2	1	0	logfile
✔	6ZLV	11275	2025-02-11	2020-07-01	3.5	3.60	—	3.5	0.011	1.86	4.0	0.12	12.22	0.01	2.221	19.37	2.72	3.7	95.7	0.6	-1.53	0.54	0.79	1.09	3.5	0.005	0.86	0.0	0.05	15.98	0.00	2.505	13.10	2.04	3.4	96.6	0.0	-0.47	1.06	0.55	0.79	2.32	5352	704	4	0	0	0	0	logfile
✔	7LQi	23487	2025-02-12	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.76	0.0	0.14	23.86	0.01	2.040	117.72	20.50	25.8	74.2	0.0	-5.05	1.41	0.64	0.85	3.63	8400	800	100	0	0	0	0	logfile
✔	8TYQ	41728	2025-02-13	2023-08-25	2.99	2.37	—	3.2	0.007	0.98	3.0	0.05	14.46	0.01	2.195	13.81	0.53	3.7	96.1	0.2	-0.16	0.71	0.64	1.66	3.2	0.003	0.74	0.0	0.05	16.57	0.00	2.355	10.78	1.38	3.5	96.5	0.0	-0.13	1.22	0.77	0.76	2.05	8529	1069	3	0	1	0	0	logfile
✔	8GHC	40040	2025-02-14	2023-03-09	2.3	2.71	—	2.6	0.009	0.91	0.0	0.06	12.96	0.01	2.067	5.41	0.09	2.1	97.9	0.0	-1.43	0.75	0.86	4.85	2.6	0.005	0.63	0.0	0.04	15.47	0.00	2.531	7.94	1.60	1.7	98.3	0.0	0.88	0.42	0.77	0.88	4.78	10512	1310	4	0	2	0	0	logfile
✔	6M7D	30129	2025-02-11	2020-03-18	2.9	2.82	—	2.8	0.010	1.03	0.0	0.07	14.95	0.00	2.157	15.48	0.58	2.4	97.6	0.0	-0.46	0.35	0.86	4.08	2.8	0.002	0.52	0.0	0.04	16.48	0.00	2.632	7.97	2.04	1.2	98.8	0.0	2.16	0.81	0.34	0.89	3.03	3280	412	2	6	0	0	0	logfile
✔	8XCV	38256	2025-02-11	2023-12-10	2.83	3.05	—	3.0	0.007	0.80	0.0	0.05	16.46	0.01	2.441	4.86	2.95	1.5	98.5	0.0	1.22	0.48	0.89	4.82	3.0	0.002	0.49	0.0	0.04	15.81	0.00	2.549	5.01	0.29	2.7	97.3	0.0	1.92	0.85	0.48	0.91	4.15	3310	415	2	0	1	7	0	logfile
✔	7CGY	30366	2025-02-12	2020-07-03	3.2	2.64	—	3.2	0.008	1.15	0.0	0.06	18.08	0.00	1.554	8.83	0.27	4.9	94.9	0.2	-4.82	0.46	0.82	2.95	3.2	0.003	0.65	0.0	0.05	17.98	0.00	2.252	5.45	2.66	5.2	94.8	0.0	-1.37	2.84	0.47	0.84	2.32	7212	915	6	0	6	0	0	logfile
✔	7C99	30309	2025-02-12	2020-06-05	3.36	3.44	—	3.5	0.008	1.05	0.0	0.05	18.46	0.00	1.776	9.93	0.00	6.0	94.0	0.0	-5.91	0.50	0.85	3.07	3.4	0.006	0.71	0.0	0.05	18.72	0.00	2.198	6.38	1.98	7.4	92.6	0.0	-2.51	1.99	0.51	0.88	2.63	7656	927	8	18	6	0	0	logfile
✔	7C9A	30310	2025-02-12	2020-06-05	3.43	3.55	—	3.6	0.007	1.04	0.0	0.05	19.52	0.01	1.965	8.72	0.00	4.9	95.1	0.0	-4.96	0.48	0.87	3.13	3.6	0.003	0.59	0.0	0.04	18.80	0.00	2.336	4.79	2.16	3.6	96.4	0.0	-0.23	1.34	0.47	0.89	2.55	7590	933	7	18	6	0	0	logfile
✔	7C9C	30311	2025-02-12	2020-06-05	3.33	3.44	—	3.4	0.009	1.03	0.0	0.06	19.22	0.00	1.232	5.18	0.79	5.4	94.6	0.0	-5.45	0.54	0.87	4.39	3.4	0.003	0.57	0.0	0.04	18.43	0.01	2.278	4.03	1.45	5.0	95.0	0.0	-1.66	0.62	0.52	0.90	3.00	7452	924	7	9	6	0	0	logfile
✔	8DP0	27627	2025-02-13	2022-07-14	2.96	3.56	—	3.4	0.002	0.50	0.0	0.04	13.31	0.00	2.213	5.91	0.00	2.5	97.5	0.0	1.09	0.77	0.70	0.99	3.4	0.004	0.60	0.0	0.04	16.00	0.00	2.516	5.24	1.43	2.9	97.1	0.0	1.04	0.97	0.83	0.88	2.22	8894	1104	2	0	0	0	0	logfile
✔	7C98	30308	2025-02-12	2020-06-05	3.47	3.58	—	3.6	0.008	1.01	0.0	0.05	18.65	0.01	1.906	9.01	0.00	7.4	92.6	0.0	-4.56	0.50	0.82	2.43	3.5	0.004	0.72	0.0	0.05	19.53	0.00	2.188	8.69	3.29	7.8	92.2	0.0	-1.51	1.11	0.50	0.85	2.21	7656	927	8	18	6	0	0	logfile
✔	6UUR	20900	2025-02-10	2019-10-31	3.5	3.51	—	3.6	0.004	0.76	0.0	0.05	15.65	0.00	2.644	8.15	0.00	5.3	94.7	0.0	-4.46	0.56	0.78	3.10	3.7	0.007	0.99	0.0	0.05	17.01	0.00	2.612	12.32	4.80	11.1	88.9	0.0	-4.59	0.49	0.55	0.81	3.03	2770	400	10	0	0	0	0	logfile
✔	8XCo	38249	2025-02-11	2023-12-10	2.64	2.79	—	2.8	0.009	1.13	0.0	0.06	17.49	0.01	2.424	6.49	6.78	2.4	97.6	0.0	0.92	0.48	0.88	4.70	2.7	0.002	0.50	0.0	0.04	17.21	0.00	2.446	4.08	0.88	3.1	96.9	0.0	2.03	0.55	0.50	0.93	4.48	3335	416	2	0	1	14	0	logfile
✔	6WKY	21813	2025-02-13	2020-04-17	4.2	4.29	—	4.1	0.006	0.74	0.0	0.05	16.88	0.00	2.366	8.91	0.00	0.6	99.4	0.0	-5.20	0.76	0.88	—	4.1	0.004	0.97	0.0	0.05	15.77	0.00	2.347	19.05	0.00	0.5	99.5	0.0	-1.85	3.28	0.75	0.87	—	9140	1160	40	0	0	0	0	logfile
✔	8Jii	36312	2025-02-13	2023-05-26	3.17	2.37	—	3.4	0.006	0.84	0.0	0.05	14.12	0.00	1.963	7.59	0.10	4.6	95.4	0.0	-1.97	0.74	0.78	3.14	3.4	0.005	0.68	0.0	0.04	15.47	0.00	2.547	5.26	1.62	4.6	95.4	0.0	-1.00	0.30	0.76	0.82	2.45	9083	1144	6	0	3	1	0	logfile

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