Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WMi	37653	2025-02-15	2023-10-03	3.53	4.01	3.72	3.9	0.003	0.66	0.0	0.04	16.40	0.00	2.226	3.76	0.00	5.3	94.7	0.0	-1.01	0.74	0.77	1.61	3.9	0.002	0.56	0.0	0.04	17.40	0.00	2.532	4.33	1.13	5.3	94.7	0.0	-0.70	0.44	0.75	0.78	1.77	10763	1237	3	39	4	0	0	logfile
✔	6LXE	30006	2025-02-15	2020-02-10	4.2	4.23	—	4.0	0.002	0.59	0.0	0.04	15.29	0.00	2.030	16.92	0.14	8.7	91.3	0.0	-3.22	0.85	0.70	—	3.9	0.003	0.77	0.0	0.04	14.94	0.00	2.327	17.39	0.14	8.8	91.2	0.0	-2.10	1.27	0.85	0.71	—	6519	813	4	0	2	0	0	logfile
✔	7KAQ	22780	2025-02-15	2020-10-01	4.0	4.57	4.07	4.2	0.003	0.52	0.0	0.04	11.53	0.00	2.158	7.51	0.00	2.3	97.7	0.0	-1.00	0.62	0.83	—	4.2	0.004	0.70	0.0	0.04	13.84	0.00	2.378	8.30	1.16	2.6	97.4	0.0	1.84	0.56	0.63	0.84	—	10753	1346	7	0	56	0	0	logfile
✔	8EMV	28266	2025-02-15	2022-09-28	3.6	3.24	3.56	3.5	0.007	0.81	0.0	0.05	15.16	0.01	2.339	3.11	0.00	6.5	93.5	0.0	-4.26	0.71	0.84	2.37	3.5	0.002	0.56	0.0	0.04	16.45	0.00	2.478	3.37	1.83	3.4	96.6	0.0	-0.15	1.16	0.71	0.84	1.85	5949	747	2	0	1	0	0	logfile
✔	8EK1	28192	2025-02-15	2022-09-19	3.6	3.91	3.66	3.8	0.004	0.74	0.0	0.05	15.72	0.00	2.185	9.39	0.53	9.2	90.3	0.5	-1.95	0.80	0.83	2.83	3.8	0.004	0.72	0.0	0.04	16.57	0.00	2.432	6.70	3.90	10.7	89.3	0.0	-1.96	1.00	0.80	0.84	2.80	8497	1102	7	0	0	0	0	logfile
✔	7WL2	32574	2025-02-14	2022-01-12	3.25	2.44	—	2.9	0.002	0.49	0.0	0.04	8.51	0.00	2.207	6.40	2.14	4.9	95.0	0.1	-4.09	0.76	0.76	3.15	2.2	0.004	0.67	0.0	0.04	14.64	0.00	2.468	9.29	4.01	5.7	94.3	0.1	0.11	1.21	0.80	0.81	2.22	10198	1330	2	0	0	0	0	logfile
✔	7WLE	32583	2025-02-14	2022-01-13	3.62	3.17	—	3.3	0.003	0.50	0.0	0.04	9.91	0.00	2.240	9.09	5.25	6.1	93.9	0.0	-3.62	0.78	0.75	1.67	3.2	0.006	1.05	1.0	0.05	14.95	0.00	2.238	17.99	4.63	5.9	94.1	0.0	-1.02	1.43	0.80	0.79	1.57	10188	1324	2	0	0	0	0	logfile
✔	8F75	28895	2025-02-14	2022-11-18	4.0	4.26	4.21	4.1	0.004	0.80	0.0	0.05	15.36	0.01	2.258	12.37	0.62	5.6	94.4	0.0	-2.96	0.70	0.68	—	4.0	0.004	0.83	0.0	0.05	17.24	0.01	2.497	22.92	3.16	6.0	94.0	0.0	-2.65	2.64	0.72	0.71	—	9899	1218	3	0	0	0	0	logfile
✔	8EJD	28178	2025-02-14	2022-09-16	3.8	4.33	3.84	4.1	0.022	1.83	0.0	0.17	17.20	0.02	2.400	2.31	0.00	4.7	95.3	0.0	-0.17	0.83	0.78	2.34	4.1	0.005	1.08	1.0	0.05	14.14	0.00	2.154	13.96	2.28	8.0	91.9	0.1	-0.02	1.89	0.83	0.78	2.24	9804	1086	36	0	87	0	0	logfile
✔	8DRA	27675	2025-02-14	2022-07-20	3.98	4.17	3.98	4.0	0.003	0.77	0.0	0.05	15.74	0.01	2.257	11.58	0.35	5.4	94.6	0.0	-3.01	0.63	0.69	0.62	4.0	0.003	0.81	0.0	0.05	17.31	0.00	2.507	19.82	3.34	6.5	93.5	0.0	-2.92	2.05	0.67	0.76	0.68	9899	1218	3	0	0	0	0	logfile
✔	7NPW	12524	2025-02-14	2021-02-28	3.99	4.53	—	4.3	0.003	0.67	0.0	0.04	13.77	0.00	2.290	12.91	0.00	3.3	96.7	0.0	0.92	0.52	0.76	1.58	4.3	0.003	0.80	0.0	0.04	16.25	0.00	2.519	15.02	2.84	3.7	96.3	0.0	0.70	0.62	0.56	0.81	1.72	9723	1278	3	0	0	0	0	logfile
✔	8A1R	15084	2025-02-14	2022-06-01	3.6	5.63	3.62	3.4	0.011	0.86	0.0	0.06	16.56	0.00	2.097	11.72	0.00	5.2	94.8	0.0	-0.06	0.91	0.75	-0.28	3.5	0.004	0.71	0.0	0.05	16.17	0.00	2.460	17.48	1.42	6.1	93.9	0.0	-0.17	0.58	0.95	0.86	-0.05	9286	1186	4	0	4	0	0	logfile
✔	7MN6	23917	2025-02-14	2021-04-30	3.09	3.68	3.18	3.5	0.013	1.51	0.0	0.08	11.93	0.01	2.392	0.37	0.00	3.5	96.4	0.2	-0.15	0.85	0.85	3.26	3.5	0.003	0.62	0.0	0.04	13.65	0.00	2.535	3.08	0.66	3.9	96.0	0.1	0.13	1.39	0.84	0.86	3.09	9649	1227	8	0	13	0	0	logfile
✔	7Q61	13849	2025-02-14	2021-11-05	2.88	3.70	2.93	3.4	0.006	1.09	0.0	0.06	14.48	0.01	2.275	3.96	0.10	4.5	95.2	0.2	-1.84	0.82	0.81	3.62	3.4	0.006	0.80	0.0	0.05	15.22	0.00	2.385	11.13	2.86	4.7	95.1	0.2	-0.41	0.48	0.82	0.83	2.90	9535	1210	4	0	7	0	0	logfile
✔	6VTL	21381	2025-02-14	2020-02-12	3.65	4.17	—	4.0	0.004	0.80	0.0	0.05	13.73	0.01	2.026	5.90	0.00	3.4	96.6	0.0	-4.96	0.68	0.72	2.51	4.0	0.004	0.66	0.0	0.04	15.41	0.00	2.528	8.81	2.46	2.4	97.6	0.0	-1.26	0.52	0.71	0.77	1.93	10242	1338	6	0	6	0	0	logfile
✔	7B6X	12057	2025-02-14	2020-12-08	3.6	2.59	—	2.5	0.008	1.06	0.0	0.06	14.17	0.01	2.035	44.45	0.09	13.3	86.7	0.0	-2.77	0.75	0.72	0.42	2.5	0.003	0.76	0.0	0.05	16.44	0.00	2.392	21.10	4.46	8.2	91.8	0.0	-1.20	0.52	0.75	0.71	-0.06	10470	1290	8	0	0	0	0	logfile
✔	7WSR	32765	2025-02-14	2022-02-01	2.9	3.08	2.90	3.1	0.004	0.65	0.0	0.04	10.32	0.00	2.244	4.74	0.83	1.8	98.2	0.0	1.52	0.62	0.82	2.75	3.1	0.003	0.61	0.0	0.04	14.34	0.00	2.550	8.05	1.46	3.1	96.9	0.0	2.30	0.96	0.61	0.83	2.44	9366	1200	4	0	4	0	0	logfile
✔	7WFG	32465	2025-02-14	2021-12-26	4.33	4.89	—	4.3	0.006	1.01	1.0	0.06	11.46	0.01	2.204	8.95	1.08	12.3	87.5	0.2	-5.06	0.68	0.68	—	4.3	0.003	0.76	0.0	0.05	12.93	0.00	2.354	14.10	0.36	9.7	90.2	0.1	-2.52	1.55	0.70	0.74	—	9836	1246	11	0	125	0	0	logfile
✔	7X5A	33013	2025-02-14	2022-03-04	3.01	3.27	3.09	3.2	0.003	0.53	0.0	0.04	20.33	0.00	2.182	3.74	0.00	1.7	98.3	0.0	0.22	0.70	0.81	3.38	3.2	0.004	0.60	0.0	0.04	21.93	0.00	2.527	7.23	1.72	1.0	99.0	0.0	0.28	0.36	0.73	0.88	3.53	10686	1083	12	104	0	0	0	logfile
✔	8i4A	35167	2025-02-14	2023-01-19	3.4	3.59	3.42	3.6	0.012	0.94	0.0	0.05	15.10	0.01	2.115	13.72	0.00	5.1	94.9	0.0	-1.46	0.61	0.79	2.13	3.6	0.006	0.66	0.0	0.04	16.15	0.00	2.557	7.59	2.73	2.1	97.9	0.0	0.93	1.12	0.59	0.80	0.93	9763	1218	2	0	1	0	0	logfile

• Page 1 of 243
• next →