Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7o24	12698	2025-02-13	2021-03-30	4.8	4.54	4.80	4.4	0.003	0.62	0.0	0.04	17.35	0.00	2.084	14.17	1.38	3.2	96.6	0.2	0.00	0.76	0.80	—	4.4	0.004	0.64	0.0	0.04	16.82	0.00	2.393	10.54	0.11	4.4	95.4	0.2	-0.26	0.97	0.76	0.81	—	9318	1090	5	46	0	0	0	logfile
✔	6X0V	21985	2025-02-10	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.46	0.0	0.03	11.61	0.00	2.465	17.39	0.00	4.0	96.0	0.0	2.56	1.19	0.40	0.75	—	1384	211	4	0	0	0	62	logfile
✔	7oZ1	13118	2025-02-13	2021-06-25	4.0	3.41	—	4.0	0.006	0.92	0.0	0.05	16.76	0.00	2.109	14.20	0.21	7.6	92.4	0.0	-3.23	0.61	0.80	—	4.0	0.003	0.63	0.0	0.04	16.87	0.00	2.578	7.65	2.04	5.5	94.5	0.0	-0.37	1.42	0.61	0.80	—	8942	1088	4	0	12	0	0	logfile
✔	7KBB	22788	2025-02-12	2020-10-01	4.02	2.37	4.07	2.0	0.006	1.16	0.0	0.06	14.88	0.01	2.073	14.81	1.58	5.4	94.1	0.5	-1.59	0.57	0.58	—	1.6	0.004	0.73	0.0	0.05	14.49	0.01	2.591	12.12	0.00	6.4	93.6	0.0	-0.41	1.22	0.59	0.59	—	6422	812	7	0	0	0	0	logfile
✔	7UR5	26705	2025-02-11	2022-04-21	2.6	2.89	2.82	2.9	0.008	1.48	0.0	0.11	29.59	0.01	2.204	2.44	0.00	0.0	0.0	0.0	—	0.05	0.58	—	2.9	0.007	0.97	0.0	0.05	27.17	0.01	1.981	14.29	0.00	0.0	0.0	0.0	—	1.53	0.08	0.70	—	5709	0	3	270	0	0	0	logfile
✔	5M6S	3451	2025-02-10	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.4	0.003	0.70	0.0	0.03	17.89	0.00	2.464	6.91	0.00	7.3	92.7	0.0	1.40	2.23	0.03	0.07	—	1593	98	1	0	0	0	793	logfile
✔	8HGP	34745	2025-02-14	2022-11-15	4.53	2.79	4.47	2.3	0.003	0.68	0.0	0.05	10.20	0.01	2.270	3.98	0.20	8.5	91.5	0.0	-3.92	0.66	0.64	—	2.0	0.013	1.13	0.0	0.05	11.48	0.01	1.907	27.89	0.00	11.9	88.1	0.0	-2.69	0.91	0.69	0.68	—	9169	1172	6	0	8	0	0	logfile
✔	7UZB	26885	2025-02-13	2022-05-08	4.1	4.79	4.12	4.2	0.003	0.60	0.0	0.04	14.48	0.00	2.037	14.67	0.00	3.6	96.4	0.0	0.43	0.90	0.81	—	4.2	0.003	0.59	0.0	0.04	12.91	0.00	2.500	11.02	0.00	3.4	96.6	0.0	0.05	0.94	0.90	0.81	—	8392	1077	4	0	4	0	0	logfile
✔	8DXR	27774	2025-02-14	2022-08-02	4.0	4.31	4.01	4.2	0.004	0.81	0.0	0.04	5.27	0.00	2.255	1.54	0.00	11.6	88.3	0.1	-0.80	0.67	0.71	—	4.2	0.004	0.66	0.0	0.04	5.02	0.00	2.529	0.13	0.00	13.0	86.9	0.1	0.32	0.35	0.68	0.72	—	10435	2101	7	0	0	0	0	logfile
✔	7NNH	12477	2025-02-11	2021-02-24	4.0	5.15	—	4.2	0.004	1.28	0.0	0.05	15.82	0.01	2.066	35.16	0.34	23.0	76.5	0.5	-3.61	0.74	0.80	—	4.2	0.004	1.08	0.0	0.05	16.98	0.01	2.517	24.36	3.06	20.2	79.7	0.2	-2.76	1.13	0.75	0.80	—	5299	637	1	0	0	0	0	logfile
✔	6UoX	20834	2025-02-14	2019-10-15	4.02	4.28	—	4.1	0.010	1.18	1.0	0.08	14.59	0.01	2.461	0.89	0.00	8.2	91.8	0.0	-4.01	0.66	0.78	—	4.1	0.003	0.69	0.0	0.04	12.10	0.00	2.430	6.64	0.00	5.6	94.4	0.0	-1.34	0.97	0.68	0.80	—	9138	1161	4	0	14	0	0	logfile
✔	6DZV	8940	2025-02-11	2018-07-05	4.2	4.78	4.79	4.8	0.013	0.70	0.0	0.08	12.11	0.01	2.088	3.69	0.00	3.8	96.2	0.0	-4.08	0.49	0.64	—	4.7	0.005	0.88	0.0	0.05	13.04	0.01	2.508	20.02	0.00	6.3	93.7	0.0	-1.15	1.52	0.54	0.72	—	6121	765	5	0	4	0	0	logfile
✔	7URi	26713	2025-02-10	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	30.06	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.7	0.007	1.37	0.0	0.06	28.71	0.01	2.201	19.50	0.00	0.0	0.0	0.0	—	2.07	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7URM	26714	2025-02-10	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	28.63	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.15	0.0	0.05	27.72	0.01	2.028	23.68	0.00	0.0	0.0	0.0	—	1.30	0.15	0.53	—	1905	0	1	90	0	0	0	logfile
✔	7YR6	34047	2025-02-11	2022-08-09	4.8	5.13	4.65	4.7	0.004	0.88	0.0	0.05	26.03	0.00	2.291	7.11	3.30	15.1	84.9	0.0	-5.39	0.81	0.74	—	4.7	0.003	0.66	0.0	0.04	25.45	0.00	2.424	18.05	0.00	19.8	80.2	0.0	-5.07	1.11	0.82	0.79	—	4248	220	5	118	0	0	0	logfile
✔	7F4U	31454	2025-02-12	2021-06-21	4.2	3.10	—	3.0	0.004	0.87	0.0	0.04	14.59	0.01	2.087	18.07	0.00	14.4	85.1	0.6	-5.17	0.65	0.58	—	2.4	0.004	0.84	0.0	0.04	13.64	0.01	2.392	12.89	0.17	13.7	86.3	0.0	-1.38	0.68	0.71	0.72	—	8079	904	4	0	323	0	0	logfile
✔	7WRJ	32728	2025-02-11	2022-01-26	4.08	4.24	—	4.2	0.009	1.32	0.0	0.07	14.01	0.01	2.255	12.35	0.55	11.5	87.8	0.7	-2.57	0.62	0.70	—	4.1	0.004	0.81	0.0	0.05	13.48	0.01	2.562	18.53	0.00	9.0	90.7	0.2	-2.07	1.39	0.65	0.75	—	3289	418	4	0	2	0	0	logfile
✔	7WTJ	32788	2025-02-10	2022-02-04	4.2	4.07	—	4.1	0.006	0.85	3.0	0.05	13.86	0.01	2.242	10.88	0.58	8.9	91.1	0.0	-2.21	0.55	0.79	—	4.1	0.003	0.69	0.0	0.05	14.23	0.00	2.530	6.94	0.00	9.1	90.9	0.0	-2.18	0.43	0.55	0.80	—	3261	424	3	0	0	0	0	logfile
✔	7WEE	32448	2025-02-11	2021-12-23	4.0	4.09	—	4.1	0.005	0.72	0.0	0.04	12.68	0.01	2.116	8.35	0.00	4.5	95.5	0.0	-1.60	0.48	0.80	—	4.0	0.004	0.69	0.0	0.04	15.17	0.00	2.534	8.50	2.70	7.6	92.4	0.0	-1.34	0.43	0.48	0.82	—	3350	429	3	0	0	0	0	logfile
✔	7RFP	24444	2025-02-11	2021-07-14	4.4	4.57	—	4.3	0.014	2.06	8.0	0.12	7.12	0.01	1.581	3.60	8.00	9.5	87.5	3.0	-1.46	0.68	0.61	—	4.3	0.004	0.91	0.0	0.04	6.98	0.00	2.434	6.58	0.00	16.5	83.0	0.5	-3.65	1.47	0.81	0.76	—	5532	1114	6	0	0	0	0	logfile

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