Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6B3o	7040	2025-02-12	2017-09-22	4.1	4.04	—	4.1	0.024	1.82	0.0	0.11	10.99	0.01	2.021	2.28	0.34	2.1	97.6	0.3	1.14	0.69	0.76	—	4.0	0.004	0.72	0.0	0.04	13.94	0.00	2.559	7.27	0.00	2.9	96.8	0.3	1.39	1.67	0.71	0.76	—	7980	1032	3	0	0	0	0	logfile
✔	8EXP	28658	2025-02-13	2022-10-25	4.2	4.47	4.29	4.6	0.019	1.74	0.0	0.10	10.69	0.01	2.031	5.52	0.60	3.4	96.4	0.2	-0.04	0.53	0.43	—	4.6	0.003	0.67	0.0	0.04	13.38	0.00	2.356	11.60	0.00	3.5	96.5	0.0	0.71	1.09	0.63	0.69	—	9024	1078	4	0	2	0	0	logfile
✔	8CYR	27082	2025-02-11	2022-05-24	4.2	3.54	3.92	4.0	0.003	0.62	0.0	0.05	8.97	0.00	2.654	0.08	2.00	4.4	95.6	0.0	-2.37	0.46	0.55	—	4.0	0.004	0.75	0.0	0.05	12.45	0.00	2.370	11.53	0.00	7.4	92.6	0.0	-3.39	2.75	0.54	0.69	—	5964	864	12	0	0	0	0	logfile
✔	7R6L	24281	2025-02-12	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	25.02	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.008	0.78	0.0	0.04	24.59	0.01	1.899	6.35	0.00	0.0	0.0	0.0	—	0.10	0.62	0.86	—	7857	0	3	366	20	0	0	logfile
✔	6ZGD	11202	2025-02-14	2020-06-18	4.1	4.30	3.99	4.2	0.006	0.62	0.0	0.05	10.93	0.01	2.137	10.94	0.61	4.6	95.4	0.0	-1.11	0.74	0.82	—	4.2	0.003	0.61	0.0	0.05	11.64	0.00	2.551	6.63	0.00	2.2	97.8	0.0	-0.52	1.01	0.70	0.81	—	10175	1440	5	0	0	0	0	logfile
✔	6i52	4410	2025-02-11	2018-11-12	4.7	4.78	—	8.9	0.002	0.57	0.0	0.04	16.56	0.00	2.303	10.11	5.70	11.6	87.5	0.9	-4.07	0.73	0.54	—	8.8	0.004	0.87	0.0	0.05	18.06	0.01	2.400	19.16	0.00	10.4	88.9	0.7	-3.02	3.56	0.76	0.63	—	3856	432	4	20	0	0	0	logfile
✔	6V6C	21068	2025-02-11	2019-12-04	4.5	4.50	—	4.4	0.003	0.55	0.0	0.04	13.78	0.00	2.226	7.10	0.00	5.1	94.9	0.0	-4.56	0.42	0.82	—	4.5	0.003	0.67	0.0	0.04	14.58	0.00	2.625	4.61	0.00	4.2	95.8	0.0	-0.05	2.01	0.42	0.81	—	4007	497	1	0	0	0	0	logfile
✔	6Wi9	21683	2025-02-12	2020-04-09	4.3	4.37	4.24	4.3	0.002	0.50	0.0	0.04	12.85	0.00	2.214	5.38	0.00	4.2	95.8	0.0	-3.72	0.77	0.78	—	4.3	0.003	0.70	0.0	0.04	13.85	0.00	2.404	10.27	0.11	5.9	94.1	0.0	-0.79	0.70	0.78	0.78	—	8550	1108	6	0	0	0	0	logfile
✔	7PDD	13334	2025-02-11	2021-08-05	4.2	4.47	—	4.3	0.004	0.75	0.0	0.04	14.38	0.00	2.092	20.92	0.00	7.1	92.9	0.0	-4.11	0.79	0.75	—	4.3	0.004	0.81	0.0	0.05	13.69	0.00	2.317	17.45	0.00	5.8	94.2	0.0	-1.33	1.23	0.79	0.73	—	4516	577	2	0	0	0	0	logfile
✔	8D9L	27265	2025-02-11	2022-06-10	4.04	5.24	4.18	4.5	0.002	0.44	0.0	0.03	16.63	0.00	2.250	7.25	0.43	1.8	98.2	0.0	1.09	0.89	0.80	—	4.4	0.004	0.62	0.0	0.04	17.67	0.00	2.184	14.96	0.00	3.9	96.1	0.0	0.20	1.47	0.91	0.84	—	5757	553	4	65	1	0	0	logfile
✔	5LY6	4118	2025-02-11	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.83	0.0	0.04	14.06	0.01	2.517	13.25	0.00	10.2	89.6	0.2	-2.86	3.31	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	7E3B	30978	2025-02-11	2021-02-08	4.2	4.05	—	4.0	0.006	0.81	0.0	0.05	13.33	0.00	2.241	16.63	0.00	8.2	91.8	0.0	-2.04	0.74	0.84	—	4.0	0.003	0.71	0.0	0.05	12.87	0.00	2.507	9.33	0.00	6.3	93.7	0.0	-1.16	1.19	0.74	0.83	—	3299	421	4	0	1	0	0	logfile
✔	6M4D	30076	2025-02-14	2020-03-06	4.4	4.58	—	4.3	0.007	0.84	0.0	0.05	31.37	0.01	2.074	25.84	0.71	6.6	92.8	0.6	-2.81	0.88	0.82	—	4.3	0.006	0.74	0.0	0.04	30.54	0.01	2.086	20.77	0.00	2.7	96.7	0.6	0.59	1.42	0.88	0.83	—	10497	682	10	250	0	0	0	logfile
✔	7E3C	30979	2025-02-10	2021-02-08	4.2	3.87	—	3.7	0.026	1.55	0.0	0.05	13.93	0.01	2.151	21.49	0.00	17.2	82.3	0.5	-3.63	0.79	0.79	—	3.7	0.003	0.76	0.0	0.05	13.74	0.00	2.538	11.47	0.00	10.1	89.9	0.0	-2.72	1.58	0.78	0.79	—	2937	405	4	0	1	0	0	logfile
✔	5FNA	3241	2025-02-11	2015-11-11	4.8	4.43	—	4.2	0.013	1.51	0.0	0.08	12.32	0.01	2.219	36.54	0.00	6.0	94.0	0.0	-1.83	0.48	0.71	—	4.2	0.003	0.87	0.0	0.05	13.50	0.00	2.327	11.81	0.00	7.2	92.8	0.0	0.67	2.80	0.50	0.78	—	5328	680	8	0	0	0	0	logfile
✔	6SGY	10188	2025-02-11	2019-08-05	4.6	4.79	—	4.6	0.007	1.35	0.0	0.06	15.71	0.01	2.225	11.45	0.67	12.8	87.2	0.0	-4.34	0.72	0.63	—	6.5	0.003	0.89	0.0	0.05	13.24	0.01	2.033	10.83	0.00	8.5	91.5	0.0	-2.17	3.43	0.78	0.76	—	5766	804	2	0	0	0	0	logfile
✔	7PAG	13269	2025-02-11	2021-07-29	4.0	4.22	—	4.1	0.005	0.75	0.0	0.05	13.81	0.01	2.177	12.66	0.00	6.3	93.7	0.0	-1.70	0.30	0.60	—	4.2	0.004	1.05	0.0	0.05	16.71	0.00	2.198	16.59	3.65	9.7	90.3	0.0	-3.16	1.29	0.33	0.67	—	4040	509	2	0	4	0	0	logfile
✔	7SWo	25477	2025-02-11	2021-11-20	4.1	3.78	—	3.8	0.007	0.89	0.0	0.05	14.43	0.01	2.215	26.02	0.19	10.0	90.0	0.0	-2.59	0.65	0.76	—	3.8	0.004	0.76	0.0	0.05	14.16	0.01	2.516	15.72	0.00	7.1	92.9	0.0	-1.32	0.51	0.64	0.75	—	4784	627	3	0	0	0	0	logfile
✔	5YW7	6847	2025-02-13	2017-11-29	4.4	4.45	4.13	4.3	0.004	0.71	1.0	0.05	13.43	0.01	2.246	14.02	6.49	4.3	95.7	0.0	-2.58	0.70	0.79	—	4.3	0.003	0.71	0.0	0.04	13.05	0.00	2.545	10.28	0.00	2.7	97.3	0.0	0.75	1.45	0.71	0.79	—	8944	1140	2	0	2	0	0	logfile
✔	8EXQ	28659	2025-02-13	2022-10-25	4.9	5.40	5.55	6.0	0.020	1.74	0.0	0.10	10.28	0.01	2.002	1.81	0.00	2.5	97.3	0.2	0.34	0.52	0.45	—	6.0	0.003	0.73	0.0	0.04	12.88	0.00	2.544	15.16	0.00	3.7	96.3	0.0	-0.63	2.50	0.57	0.62	—	9304	1108	4	0	2	0	0	logfile

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