Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N9Q	24259	2025-02-12	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.6	0.006	1.47	0.0	0.00	7.94	0.00	2.432	35.79	0.00	28.5	70.6	1.0	-4.70	2.66	0.86	0.82	—	6945	2315	1	0	0	0	0	logfile
✔	6TNG	10532	2025-02-12	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.004	0.84	0.0	0.00	5.93	0.00	2.481	2.31	0.00	18.1	81.8	0.1	-2.28	0.37	0.76	0.71	—	8240	2060	2	0	0	0	0	logfile
✔	7N9Y	24264	2025-02-12	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.3	0.004	1.22	0.0	0.00	6.48	0.00	2.505	15.16	0.00	26.4	73.1	0.5	-4.83	3.35	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	6oG3	20051	2025-02-10	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.005	1.08	0.0	0.00	7.76	0.00	2.614	47.39	0.00	10.9	89.1	0.0	-1.22	2.12	0.67	0.87	—	1215	396	4	0	9	0	0	logfile
✔	7N95	24250	2025-02-12	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.006	1.29	0.0	0.00	6.65	0.00	2.440	11.36	0.00	21.0	78.7	0.2	-3.63	2.26	0.85	0.84	—	7299	2433	2	0	0	0	0	logfile
✔	7YC8	33736	2025-02-12	2022-07-01	4.14	7.25	4.31	4.1	0.002	0.51	0.0	0.02	25.12	0.00	2.079	18.05	0.00	0.0	0.0	0.0	—	0.96	0.87	—	4.1	0.006	0.82	0.0	0.04	27.70	0.01	1.970	59.75	0.00	0.0	0.0	0.0	—	1.25	0.97	0.89	—	8335	0	2	388	1	0	0	logfile
✔	7JSH	22454	2025-02-12	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.007	1.51	0.0	0.06	14.49	0.01	2.198	18.51	0.00	30.2	69.4	0.4	-5.64	6.11	0.72	0.66	—	7916	1904	8	15	0	0	0	logfile
✔	8HD6	34670	2025-02-13	2022-11-03	3.73	4.52	3.73	3.2	0.002	0.54	0.0	0.02	23.56	0.00	1.969	2.97	0.00	0.0	0.0	0.0	—	0.90	0.78	—	3.3	0.006	0.75	0.0	0.04	25.03	0.01	1.773	20.61	0.00	0.0	0.0	0.0	—	2.17	0.91	0.82	—	8980	0	2	419	25	0	0	logfile
✔	7SAM	24952	2025-02-11	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.006	0.87	0.0	0.04	28.10	0.01	1.833	65.98	0.00	0.0	0.0	0.0	—	5.47	0.95	0.86	—	5399	0	1	169	0	0	1802	logfile
✔	6UES	20755	2025-02-11	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	26.31	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.90	0.0	0.04	27.56	0.01	1.916	31.75	0.00	0.0	0.0	0.0	—	0.83	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	7YCH	33739	2025-02-13	2022-07-01	3.09	4.46	3.30	3.5	0.002	0.48	0.0	0.02	24.19	0.00	1.420	15.91	0.00	0.0	0.0	0.0	—	0.92	0.84	—	3.6	0.008	0.71	0.0	0.04	24.27	0.00	1.777	27.90	0.00	0.0	0.0	0.0	—	0.92	0.94	0.88	—	8661	0	3	404	4	0	0	logfile
✔	7YCi	33740	2025-02-13	2022-07-01	2.98	4.31	3.09	3.2	0.002	0.48	0.0	0.02	24.35	0.00	1.521	15.79	0.00	0.0	0.0	0.0	—	0.93	0.84	—	3.3	0.009	0.74	0.0	0.04	24.66	0.01	1.830	25.93	0.00	0.0	0.0	0.0	—	0.96	0.95	0.90	—	8474	0	3	395	4	0	0	logfile
✔	5LY6	4118	2025-02-11	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.83	0.0	0.04	14.06	0.01	2.517	13.25	0.00	10.2	89.6	0.2	-2.86	3.31	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	8EXA	28656	2025-02-11	2022-10-25	3.14	3.45	3.09	3.4	0.004	0.54	0.0	0.03	22.74	0.00	2.223	15.79	0.40	3.6	96.4	0.0	0.27	0.61	0.69	4.07	3.4	0.003	0.49	0.0	0.03	22.53	0.00	2.450	12.88	2.83	2.7	97.3	0.0	0.92	1.14	0.60	0.68	3.97	5539	341	4	139	0	0	0	logfile
✔	7QEY	13944	2025-02-14	2021-12-03	2.0	2.46	—	2.2	0.005	0.85	0.0	0.03	10.53	0.00	2.199	3.57	2.35	1.7	98.3	0.0	1.74	0.77	0.90	5.27	2.2	0.003	0.69	0.0	0.04	13.46	0.00	2.549	3.68	2.15	2.2	97.8	0.0	3.47	1.01	0.78	0.92	3.81	9467	1092	18	0	30	281	0	logfile
✔	7QEW	13943	2025-02-14	2021-12-03	2.1	2.62	—	2.2	0.005	0.86	0.0	0.03	11.15	0.00	2.191	3.73	2.18	3.3	96.7	0.0	1.32	0.78	0.89	4.62	2.3	0.003	0.66	0.0	0.04	14.43	0.00	2.565	5.15	2.28	2.7	97.3	0.0	3.06	1.34	0.79	0.92	3.36	9702	1128	18	0	30	234	0	logfile
✔	7Q2Z	13786	2025-02-12	2021-10-26	3.2	2.91	3.15	3.2	0.002	0.48	0.0	0.03	18.98	0.00	2.227	4.26	0.00	6.5	93.4	0.1	-1.44	0.67	0.80	2.05	3.2	0.003	0.55	0.0	0.03	19.95	0.00	2.375	2.84	1.09	2.5	97.4	0.1	2.17	1.21	0.70	0.86	2.00	8258	902	4	46	0	0	0	logfile
✔	8ZYV	60580	2025-02-13	2024-06-18	3.12	2.96	3.00	3.2	0.003	0.49	0.0	0.03	17.75	0.00	2.173	7.29	0.43	1.6	98.4	0.0	3.33	0.60	0.82	1.10	3.2	0.004	0.53	0.0	0.04	17.94	0.00	2.389	7.73	2.13	2.1	97.9	0.0	3.60	0.25	0.58	0.82	1.07	8913	1174	10	0	2	5	0	logfile
✔	7RZS	24776	2025-02-10	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.004	0.46	0.0	0.04	16.05	0.00	2.487	4.26	0.35	0.0	100.0	0.0	5.18	1.19	0.79	0.82	1.13	2445	324	6	0	0	0	0	logfile
✔	7RZQ	24774	2025-02-10	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.004	0.35	0.0	0.03	14.97	0.00	2.615	4.49	1.07	0.0	100.0	0.0	5.42	0.29	0.82	0.83	1.87	2421	322	6	0	0	0	0	logfile

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