Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ET7	28587	2025-02-12	2022-10-16	3.77	4.05	3.85	4.0	0.003	0.49	0.0	0.03	11.06	0.00	2.342	3.90	0.24	3.2	96.8	0.0	1.90	0.49	0.70	1.68	4.0	0.003	0.56	0.0	0.03	15.72	0.00	2.398	6.83	2.83	4.5	95.5	0.0	1.96	1.50	0.49	0.72	1.52	8111	532	3	0	3	0	4007	logfile
✔	6XMG	22258	2025-02-13	2020-06-30	4.8	8.26	—	3.9	0.002	0.53	0.0	0.03	21.64	0.00	2.187	10.77	0.00	6.7	93.3	0.0	-2.01	0.90	0.74	—	3.4	0.003	0.74	0.0	0.04	22.84	0.01	2.051	30.18	0.20	9.6	90.4	0.0	-2.12	0.75	0.91	0.76	—	8361	638	4	154	1	0	0	logfile
✔	7P1J	13162	2025-02-11	2021-07-01	3.04	4.02	2.96	4.0	0.002	0.48	0.0	0.03	8.89	0.00	2.305	5.96	2.29	3.5	96.5	0.0	2.14	0.65	0.71	0.64	4.0	0.003	0.90	0.0	0.04	14.51	0.00	2.424	15.87	4.15	6.3	93.7	0.0	1.10	1.40	0.66	0.74	0.67	6502	868	2	0	0	0	0	logfile
✔	7XQG	33395	2025-02-14	2022-05-07	3.8	4.58	3.85	4.2	0.002	0.46	0.0	0.03	12.11	0.00	2.030	4.64	5.00	1.5	98.0	0.5	2.98	0.79	0.85	2.01	4.2	0.003	0.70	0.0	0.04	15.40	0.00	2.486	6.32	3.24	3.0	97.0	0.0	2.48	0.72	0.80	0.86	1.64	10206	1206	12	0	12	0	0	logfile
✔	7oQZ	13035	2025-02-12	2021-06-04	3.27	3.59	3.75	3.8	0.009	0.98	0.0	0.03	14.99	0.00	2.257	3.35	0.51	1.3	98.7	0.0	4.83	0.61	0.78	2.67	3.8	0.004	0.73	0.0	0.04	18.06	0.00	2.366	11.16	4.08	2.5	97.5	0.0	3.94	0.72	0.62	0.80	2.33	7996	948	8	0	16	0	0	logfile
✔	8D9L	27265	2025-02-11	2022-06-10	4.04	5.24	4.18	4.5	0.002	0.44	0.0	0.03	16.63	0.00	2.250	7.25	0.43	1.8	98.2	0.0	1.09	0.89	0.80	—	4.4	0.004	0.62	0.0	0.04	17.67	0.00	2.184	14.96	0.00	3.9	96.1	0.0	0.20	1.47	0.91	0.84	—	5757	553	4	65	1	0	0	logfile
✔	8HD7	34671	2025-02-13	2022-11-03	3.52	3.99	3.58	3.3	0.003	0.60	0.0	0.03	23.66	0.00	1.927	2.96	0.00	0.0	0.0	0.0	—	0.89	0.77	—	3.3	0.007	0.76	0.0	0.04	23.88	0.01	1.828	13.19	0.00	0.0	0.0	0.0	—	1.49	0.91	0.84	—	8983	0	2	419	28	0	0	logfile
✔	7XD4	33135	2025-02-13	2022-03-26	3.89	4.13	—	3.8	0.003	0.59	0.0	0.03	23.99	0.00	1.880	1.73	0.00	0.0	0.0	0.0	—	0.85	0.73	—	3.8	0.006	0.79	0.0	0.04	24.53	0.01	1.749	16.03	0.00	0.0	0.0	0.0	—	1.96	0.87	0.79	—	9062	0	2	423	28	0	0	logfile
✔	7N0K	24107	2025-02-11	2021-05-25	3.5	4.16	—	4.1	0.003	0.56	0.0	0.03	18.36	0.00	2.238	8.16	7.46	1.0	99.0	0.0	-2.20	0.63	0.77	1.65	4.1	0.003	0.62	0.0	0.03	19.47	0.00	2.617	7.08	5.41	1.8	98.2	0.0	3.26	0.68	0.60	0.76	0.96	5154	626	2	0	0	0	0	logfile
✔	7YCG	33738	2025-02-13	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	24.46	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.008	0.69	0.0	0.04	24.55	0.00	1.842	30.51	0.00	0.0	0.0	0.0	—	0.33	0.95	0.89	—	8661	0	3	404	4	0	0	logfile
✔	8EXA	28656	2025-02-11	2022-10-25	3.14	3.45	3.09	3.4	0.004	0.54	0.0	0.03	22.74	0.00	2.223	15.79	0.40	3.6	96.4	0.0	0.27	0.61	0.69	4.07	3.4	0.003	0.49	0.0	0.03	22.53	0.00	2.450	12.88	2.83	2.7	97.3	0.0	0.92	1.14	0.60	0.68	3.97	5539	341	4	139	0	0	0	logfile
✔	7RZT	24777	2025-02-10	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.004	0.36	0.0	0.03	15.45	0.00	2.447	4.84	0.00	0.3	99.7	0.0	5.95	0.25	0.80	0.83	2.98	2451	324	6	0	0	0	0	logfile
✔	7RZQ	24774	2025-02-10	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.004	0.35	0.0	0.03	14.97	0.00	2.615	4.49	1.07	0.0	100.0	0.0	5.42	0.29	0.82	0.83	1.87	2421	322	6	0	0	0	0	logfile
✔	7EZ0	31385	2025-02-12	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	23.64	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.008	0.80	0.0	0.04	23.88	0.01	1.829	6.42	0.00	0.0	0.0	0.0	—	1.91	0.77	0.86	—	8306	0	2	387	27	0	0	logfile
✔	8CZi	27098	2025-02-10	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.17	0.00	2.440	4.09	1.68	0.0	100.0	0.0	5.65	0.84	0.82	0.84	1.88	2550	339	6	0	0	0	0	logfile
✔	7RZV	24779	2025-02-10	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	15.96	0.00	2.434	3.69	1.01	0.0	100.0	0.0	5.91	0.88	0.83	0.83	1.79	2562	339	6	0	0	0	0	logfile
✔	7Q2Z	13786	2025-02-12	2021-10-26	3.2	2.91	3.15	3.2	0.002	0.48	0.0	0.03	18.98	0.00	2.227	4.26	0.00	6.5	93.4	0.1	-1.44	0.67	0.80	2.05	3.2	0.003	0.55	0.0	0.03	19.95	0.00	2.375	2.84	1.09	2.5	97.4	0.1	2.17	1.21	0.70	0.86	2.00	8258	902	4	46	0	0	0	logfile
✔	7QEW	13943	2025-02-14	2021-12-03	2.1	2.62	—	2.2	0.005	0.86	0.0	0.03	11.15	0.00	2.191	3.73	2.18	3.3	96.7	0.0	1.32	0.78	0.89	4.62	2.3	0.003	0.66	0.0	0.04	14.43	0.00	2.565	5.15	2.28	2.7	97.3	0.0	3.06	1.34	0.79	0.92	3.36	9702	1128	18	0	30	234	0	logfile
✔	5LY6	4118	2025-02-11	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.83	0.0	0.04	14.06	0.01	2.517	13.25	0.00	10.2	89.6	0.2	-2.86	3.31	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	7RZS	24776	2025-02-10	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.004	0.46	0.0	0.04	16.05	0.00	2.487	4.26	0.35	0.0	100.0	0.0	5.18	1.19	0.79	0.82	1.13	2445	324	6	0	0	0	0	logfile

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