Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oLG	16957	2025-02-10	2023-03-30	4.2	3.16	3.54	4.2	0.002	0.41	0.0	0.05	9.55	0.00	2.261	9.57	0.00	13.5	86.5	0.0	-4.82	0.25	0.63	—	4.2	0.006	1.00	0.0	0.06	15.89	0.00	2.594	19.83	0.00	17.8	82.2	0.0	-4.83	1.60	0.30	0.66	—	1490	195	5	0	0	0	0	logfile
✔	8QRS	18625	2025-02-10	2023-10-09	2.86	3.25	2.73	3.2	0.003	0.53	0.0	0.04	12.98	0.01	2.208	6.77	0.31	1.7	98.3	0.0	1.87	0.47	0.86	4.45	3.2	0.003	0.55	0.0	0.04	14.67	0.00	2.548	5.35	2.45	0.7	99.3	0.0	3.17	0.36	0.46	0.85	3.26	3093	416	2	0	0	0	0	logfile
✔	8GSB	34228	2025-02-10	2022-09-05	3.99	4.17	3.86	4.1	0.004	0.73	0.0	0.05	13.34	0.01	2.338	6.14	0.00	8.4	91.3	0.3	-1.84	0.73	0.81	2.48	4.1	0.004	0.71	0.0	0.04	15.23	0.00	2.508	7.76	4.08	7.4	92.6	0.0	-1.54	0.55	0.75	0.82	2.37	3157	400	3	0	0	0	0	logfile
✔	8TiF	41286	2025-02-10	2023-07-19	3.89	3.95	3.71	4.1	0.005	0.55	0.0	0.04	17.04	0.00	2.317	8.78	1.02	1.6	98.4	0.0	0.15	0.23	0.85	1.30	4.1	0.004	0.54	0.0	0.04	17.08	0.00	2.619	4.39	5.10	1.6	98.4	0.0	0.67	0.30	0.22	0.85	3.19	889	131	1	0	0	0	0	logfile
✔	8Q92	18268	2025-02-10	2023-08-19	3.05	2.89	2.63	3.1	0.008	1.37	0.0	0.09	13.95	0.01	2.531	0.94	1.23	8.7	91.3	0.0	-3.17	0.37	0.86	4.77	3.1	0.004	0.74	0.0	0.05	15.68	0.00	2.615	3.51	1.23	6.2	93.8	0.0	-2.76	0.28	0.32	0.83	3.47	2091	282	3	0	0	0	0	logfile
✔	8Q96	18269	2025-02-10	2023-08-19	3.09	3.01	2.64	3.2	0.009	1.24	0.0	0.07	10.14	0.01	2.529	1.50	0.00	5.6	94.4	0.0	-3.54	0.47	0.86	5.83	3.1	0.004	0.69	0.0	0.05	14.45	0.00	2.608	3.24	4.00	5.6	94.4	0.0	-3.33	1.19	0.45	0.84	4.93	2100	224	12	0	88	0	0	logfile
✔	8JEX	36202	2025-02-10	2023-05-16	3.1	3.05	2.75	3.3	0.012	1.13	0.0	0.06	12.57	0.00	2.505	7.63	0.00	3.8	96.2	0.0	-4.98	0.45	0.83	2.64	3.2	0.003	0.51	0.0	0.05	13.90	0.00	2.619	1.17	3.42	1.9	98.1	0.0	-3.00	0.94	0.46	0.86	3.07	2616	330	18	0	60	0	0	logfile
✔	8JTA	36638	2025-02-10	2023-06-21	3.36	3.64	3.38	3.6	0.013	1.26	0.0	0.07	14.05	0.01	2.320	7.70	2.67	5.5	94.5	0.0	-2.72	0.63	0.85	1.70	3.6	0.003	0.77	0.0	0.04	15.38	0.01	2.488	6.68	3.67	3.1	96.9	0.0	1.46	0.50	0.62	0.87	1.53	2879	386	2	0	1	0	0	logfile
✔	8JGA	36228	2025-02-10	2023-05-20	3.68	3.83	3.25	3.8	0.005	0.81	0.0	0.05	14.34	0.01	2.230	16.80	1.24	7.0	92.5	0.5	-2.18	0.58	0.81	2.54	3.8	0.003	0.71	0.0	0.05	16.30	0.00	2.639	9.37	2.48	4.5	95.5	0.0	-1.11	0.44	0.57	0.80	2.22	1516	202	1	0	0	0	0	logfile
✔	8oLN	16959	2025-02-10	2023-03-30	3.3	3.38	2.68	3.7	0.002	0.48	0.0	0.04	9.04	0.00	2.271	10.63	2.41	8.2	91.8	0.0	-4.24	0.41	0.82	4.41	3.4	0.004	0.63	0.0	0.05	17.25	0.00	2.549	11.35	8.28	6.2	93.8	0.0	-4.46	2.86	0.40	0.81	3.70	2830	360	10	0	0	0	0	logfile
✔	8oT1	17166	2025-02-10	2023-04-20	2.59	3.30	2.25	3.4	0.013	2.40	0.0	0.13	17.35	0.01	2.477	0.00	0.00	0.0	100.0	0.0	-3.37	0.47	0.69	6.48	3.3	0.006	0.84	0.0	0.05	17.11	0.00	2.616	13.69	3.97	6.4	93.6	0.0	-2.10	1.53	0.39	0.74	5.01	2460	336	12	0	0	0	0	logfile
✔	8oL6	16952	2025-02-10	2023-03-30	3.8	3.75	2.68	3.8	0.004	0.56	0.0	0.05	9.68	0.00	2.255	9.57	0.00	3.4	96.6	0.0	-2.28	0.46	0.86	5.96	3.8	0.005	0.66	0.0	0.05	16.45	0.00	2.557	12.17	8.70	7.9	91.4	0.7	-2.68	1.13	0.46	0.87	4.57	2260	310	10	0	0	0	0	logfile
✔	8QN7	18509	2025-02-10	2023-09-25	2.7	2.38	2.18	2.7	0.010	1.43	0.0	0.09	13.54	0.01	2.570	5.31	3.45	8.3	91.7	0.0	-3.22	0.45	0.93	6.45	2.6	0.003	0.52	0.0	0.05	18.43	0.00	2.686	2.83	2.76	6.7	93.3	0.0	-3.32	1.19	0.43	0.92	6.17	1455	190	5	0	0	0	0	logfile
✔	8G3K	29700	2025-02-10	2023-02-08	2.2	2.34	2.21	2.3	0.002	0.36	0.0	0.03	9.98	0.00	2.348	3.50	0.00	0.7	99.3	0.0	5.07	0.46	0.82	4.79	2.3	0.002	0.47	0.0	0.03	16.63	0.00	2.600	4.59	1.23	0.4	99.6	0.0	4.75	1.11	0.46	0.83	4.89	2244	285	2	0	0	0	0	logfile
✔	8oLo	16960	2025-02-10	2023-03-30	3.5	3.16	3.18	3.4	0.005	0.87	0.0	0.07	11.69	0.01	2.375	9.87	0.00	6.9	93.1	0.0	-3.19	0.37	0.76	5.66	3.2	0.008	0.86	0.0	0.06	17.41	0.00	2.541	13.30	5.42	5.9	94.1	0.0	-3.48	1.84	0.39	0.79	2.95	2330	310	10	0	0	0	0	logfile
✔	8JJo	36361	2025-02-10	2023-05-31	3.4	3.75	3.53	3.8	0.003	0.64	0.0	0.04	17.70	0.00	2.184	10.68	0.31	5.7	94.3	0.0	-0.11	0.40	0.71	1.06	3.8	0.003	0.60	0.0	0.04	18.25	0.00	2.440	6.90	2.79	5.1	94.9	0.0	1.05	0.41	0.36	0.72	1.29	3016	375	2	0	1	0	0	logfile
✔	8VE2	43162	2025-02-10	2023-12-18	3.3	3.54	3.12	3.6	0.002	0.57	0.0	0.05	10.51	0.00	2.295	5.05	0.00	1.1	98.9	0.0	1.60	0.75	0.77	4.10	3.5	0.004	0.61	0.0	0.05	12.87	0.01	2.602	7.15	5.50	2.6	97.4	0.0	-0.10	0.71	0.76	0.79	3.74	3105	465	4	0	0	0	0	logfile
✔	8oL2	16942	2025-02-10	2023-03-30	3.0	3.17	1.54	3.3	0.004	0.45	0.0	0.05	9.08	0.00	2.275	10.00	4.35	3.4	96.6	0.0	-2.34	0.48	0.91	5.22	3.3	0.006	0.68	0.0	0.05	15.97	0.00	2.530	3.04	7.83	4.1	92.4	3.4	-3.10	0.44	0.43	0.90	6.05	2260	310	10	0	0	0	0	logfile
✔	7YNG	33961	2025-02-10	2022-07-30	3.1	3.08	2.33	3.4	0.009	0.85	0.0	0.06	13.71	0.00	2.192	9.66	0.00	10.4	89.6	0.0	-4.25	0.36	0.76	3.68	3.4	0.003	0.51	0.0	0.05	14.87	0.00	2.597	5.57	0.37	3.3	96.7	0.0	-2.17	0.35	0.34	0.75	3.93	2628	378	6	0	0	0	0	logfile
✔	8HZC	35088	2025-02-10	2023-01-08	3.2	3.16	2.79	3.3	0.002	0.51	0.0	0.05	13.53	0.00	2.497	11.14	0.00	11.3	88.7	0.0	-5.03	0.39	0.85	4.46	3.3	0.003	0.47	0.0	0.05	16.23	0.00	2.640	5.18	3.21	9.4	90.6	0.0	-3.45	0.91	0.37	0.85	3.35	3108	450	6	0	0	0	0	logfile

• ← previous
• Page 2 of 243
• next →