Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7EFD	31084	2025-02-11	2021-03-21	1.77	1.78	1.82	1.9	0.033	3.16	12.0	0.09	15.32	0.02	0.001	1.61	2.15	1.7	97.5	0.8	-0.54	0.74	0.82	5.75	1.9	0.005	0.80	0.0	0.05	14.80	0.00	2.552	4.70	0.27	3.4	96.0	0.6	0.76	0.56	0.80	0.84	6.40	4004	480	8	0	4	156	0	logfile
✔	7EFC	31083	2025-02-11	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	14.88	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	1.9	0.005	0.82	0.0	0.05	14.74	0.00	2.549	6.44	0.27	4.4	95.6	0.0	-0.14	0.93	0.80	0.85	6.60	4004	480	8	0	4	156	0	logfile
✔	9FVD	50803	2025-02-14	2024-06-26	3.2	3.54	3.13	3.4	0.003	0.61	0.0	0.04	15.20	0.00	0.014	16.91	0.00	2.5	97.5	0.0	1.52	0.47	0.80	3.04	3.5	0.008	2.04	1.0	0.19	22.29	0.01	1.716	36.24	3.16	5.3	94.7	0.0	-0.29	2.28	0.43	0.72	1.68	10146	1143	8	54	0	0	0	logfile
✔	8AZS	15770	2025-02-13	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.67	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	2.8	0.074	7.47	388.0	0.40	33.42	0.06	1.152	629.53	23.33	39.1	24.5	36.4	-9.07	18.06	0.18	0.16	-0.06	9036	1224	36	0	0	0	0	logfile
✔	9AST	43825	2025-02-13	2024-02-26	3.07	2.24	3.08	2.1	0.004	0.70	0.0	0.05	15.90	0.00	0.114	6.75	2.16	2.4	97.2	0.4	0.39	0.74	0.77	2.51	2.1	0.003	0.53	0.0	0.04	16.02	0.00	2.518	4.14	3.80	2.4	97.5	0.1	1.13	0.31	0.74	0.78	2.26	8876	1134	6	0	0	0	0	logfile
✔	6TA3	10421	2025-02-14	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.96	0.01	0.439	210.72	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.005	0.95	0.0	0.05	18.50	0.01	1.331	26.63	5.24	3.3	96.6	0.1	-0.31	2.44	0.78	0.73	0.48	9491	1201	6	0	5	0	0	logfile
✔	6UZ0	20949	2025-02-14	2019-11-14	3.24	3.60	—	3.6	0.022	1.38	5.0	0.18	20.23	0.01	0.584	27.88	2.73	7.5	91.5	1.0	-2.63	0.48	0.76	1.87	3.6	0.004	0.79	0.0	0.04	18.23	0.00	2.390	11.45	4.19	6.9	92.9	0.2	-0.39	0.62	0.46	0.77	1.33	9557	1138	5	0	26	0	0	logfile
✔	7WCo	32426	2025-02-13	2021-12-20	3.8	3.89	—	3.9	0.008	1.13	0.0	0.06	11.02	0.01	0.599	4.59	0.53	14.2	85.8	0.0	-5.43	0.56	0.85	2.78	3.9	0.005	0.79	0.0	0.05	15.17	0.01	2.539	10.61	4.55	10.2	89.8	0.0	-3.05	1.52	0.56	0.86	2.92	8950	1195	15	0	0	0	0	logfile
✔	6N1H	8902	2025-02-14	2018-11-08	3.17	3.22	—	3.2	0.006	1.13	0.0	0.06	12.23	0.01	0.657	32.07	3.97	7.4	92.6	0.0	-7.22	0.39	0.46	0.05	3.2	0.003	0.73	0.0	0.04	16.82	0.00	2.423	8.58	1.44	4.2	95.8	0.0	0.27	2.37	0.61	0.83	1.49	10991	1328	16	0	0	0	0	logfile
✔	6F07	4163	2025-02-14	2017-11-17	3.6	3.68	—	3.7	0.007	0.96	0.0	0.05	10.28	0.01	0.707	5.81	0.70	6.1	93.7	0.2	-3.04	0.47	0.57	1.27	3.6	0.003	0.65	0.0	0.04	15.72	0.00	2.113	8.61	1.84	3.6	96.4	0.0	1.17	2.41	0.55	0.69	0.68	10149	1227	4	0	2	0	0	logfile
✔	6TAT	10427	2025-02-11	2019-10-30	3.7	2.79	—	2.9	0.005	0.91	0.0	0.05	15.56	0.01	0.722	5.86	0.68	6.8	93.2	0.0	-4.23	0.61	0.78	2.00	2.9	0.003	0.62	0.0	0.04	18.39	0.01	2.201	3.64	2.16	6.0	94.0	0.0	0.49	0.54	0.61	0.78	1.38	6790	820	5	0	0	0	0	logfile
✔	7DX4	30895	2025-02-13	2021-01-18	3.6	3.96	—	3.8	0.007	1.00	0.0	0.06	11.25	0.01	0.766	7.28	0.23	6.0	93.7	0.3	-4.20	0.71	0.79	3.35	3.8	0.004	0.78	0.0	0.05	14.18	0.00	2.214	11.25	2.27	4.7	95.3	0.0	-0.23	1.33	0.71	0.79	2.67	8234	1027	6	0	5	0	0	logfile
✔	8G16	29663	2025-02-14	2023-02-01	2.07	2.69	2.04	2.3	0.004	0.79	0.0	0.05	16.16	0.01	0.795	4.86	1.21	4.1	95.9	0.0	-1.24	0.88	0.91	5.21	2.4	0.004	0.74	0.0	0.05	16.09	0.01	2.036	11.09	1.30	4.2	95.7	0.1	0.77	1.23	0.88	0.91	5.58	10108	1336	4	0	0	0	4	logfile
✔	7MiD	23847	2025-02-14	2021-04-16	3.56	4.10	—	3.9	0.010	1.02	0.0	0.06	20.37	0.01	0.918	14.61	5.73	8.6	91.3	0.1	-1.30	0.76	0.66	0.22	4.0	0.003	0.74	0.0	0.04	20.18	0.00	2.120	9.67	1.65	5.6	94.4	0.0	0.25	1.91	0.81	0.81	0.87	9789	1080	11	57	6	0	0	logfile
✔	9BXR	45009	2025-02-12	2024-05-22	3.2	2.90	3.18	3.3	0.011	1.87	0.0	0.09	11.16	0.01	0.991	32.81	0.00	6.7	92.0	1.3	-2.61	0.36	0.73	3.45	3.1	0.003	0.65	0.0	0.05	15.11	0.00	2.402	2.51	1.99	6.4	93.6	0.0	-2.70	1.26	0.38	0.78	2.64	7184	462	6	0	0	0	3656	logfile
✔	9D85	46630	2025-02-12	2024-08-18	3.59	3.91	3.62	3.5	0.005	1.21	6.0	0.08	21.01	0.02	0.994	27.16	0.33	6.4	93.4	0.1	-1.10	0.68	0.44	0.21	3.6	0.004	0.83	0.0	0.05	21.79	0.00	2.217	21.50	2.76	4.8	95.2	0.0	-1.67	1.65	0.75	0.60	0.96	7201	739	5	65	0	0	0	logfile
✔	8RK4	19259	2025-02-12	2023-12-23	4.74	6.78	6.17	3.7	0.003	0.72	0.0	0.05	11.12	0.00	0.995	21.20	0.00	4.0	95.7	0.3	-1.38	0.94	0.75	—	3.8	0.002	0.67	0.0	0.04	11.73	0.00	2.474	8.31	0.00	7.4	92.4	0.3	-1.77	0.86	0.94	0.77	—	8373	1119	3	0	0	0	0	logfile
✔	8WoM	37692	2025-02-13	2023-10-07	3.5	3.76	3.53	3.7	0.005	1.04	5.0	0.07	11.19	0.01	1.004	3.36	0.00	9.1	90.9	0.0	-6.42	0.66	0.82	2.93	3.7	0.004	0.67	0.0	0.04	13.88	0.00	2.480	4.69	1.73	6.8	93.2	0.0	-2.73	0.73	0.66	0.82	1.83	9348	1217	2	0	1	0	0	logfile
✔	5FN3	3238	2025-02-14	2015-11-10	4.1	4.53	—	4.1	0.011	1.81	26.0	0.10	18.64	0.01	1.021	20.42	11.34	10.7	85.3	4.0	-1.54	0.66	0.60	—	4.1	0.004	0.86	0.0	0.04	14.22	0.01	2.382	17.99	0.00	9.0	90.2	0.8	-0.67	2.21	0.71	0.79	—	10291	1318	5	0	0	0	0	logfile
✔	8UPY	42457	2025-02-10	2023-10-23	2.8	3.43	3.00	2.9	0.012	1.65	0.0	0.12	28.73	0.01	1.040	88.62	0.00	0.0	0.0	0.0	—	0.18	0.52	—	2.9	0.006	0.78	0.0	0.04	27.61	0.01	2.038	25.14	0.00	0.0	0.0	0.0	—	1.07	0.22	0.75	—	1532	0	1	72	0	0	0	logfile

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