Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QKK	18464	2025-02-11	2023-09-15	3.23	3.44	3.28	3.6	0.002	0.49	0.0	0.04	14.14	0.00	2.132	9.00	0.00	2.9	97.1	0.0	2.28	0.62	0.79	1.22	3.6	0.004	1.16	1.0	0.05	15.86	0.00	2.529	9.27	1.68	1.9	98.1	0.0	1.66	0.79	0.64	0.80	1.23	5581	730	1	0	0	0	0	logfile
✔	8JHU	36294	2025-02-11	2023-05-25	3.1	3.30	3.08	3.3	0.003	0.59	0.0	0.04	15.64	0.01	2.200	10.88	0.82	5.4	94.1	0.5	-0.27	0.69	0.84	2.83	3.3	0.003	0.53	0.0	0.04	16.04	0.00	2.512	8.14	1.51	6.1	93.9	0.0	0.12	0.34	0.70	0.86	2.87	6554	811	1	0	0	0	0	logfile
✔	8PD7	17602	2025-02-12	2023-06-11	3.4	2.32	3.31	2.1	0.003	0.59	0.0	0.04	12.69	0.00	2.276	3.44	0.11	1.5	98.5	0.0	1.39	0.62	0.78	2.65	2.1	0.004	0.57	0.0	0.04	16.03	0.00	2.571	5.31	2.27	2.1	97.9	0.0	2.27	1.02	0.68	0.81	1.95	8121	1028	1	0	0	0	0	logfile
✔	8UPY	42457	2025-02-10	2023-10-23	2.8	3.43	3.00	2.9	0.012	1.65	0.0	0.12	28.73	0.01	1.040	88.62	0.00	0.0	0.0	0.0	—	0.18	0.52	—	2.9	0.006	0.78	0.0	0.04	27.61	0.01	2.038	25.14	0.00	0.0	0.0	0.0	—	1.07	0.22	0.75	—	1532	0	1	72	0	0	0	logfile
✔	8JW4	36679	2025-02-14	2023-06-28	3.13	3.85	3.39	3.8	0.005	0.76	0.0	0.05	9.53	0.00	2.214	2.01	0.28	8.2	91.8	0.0	-4.11	0.63	0.70	2.66	3.7	0.003	0.66	0.0	0.04	13.92	0.00	2.554	4.17	1.12	4.8	95.2	0.0	-1.03	1.34	0.63	0.73	1.22	9582	1191	1	0	0	0	0	logfile
✔	9C4N	45191	2025-02-10	2024-06-04	2.9	2.74	—	3.0	0.013	1.70	0.0	0.06	9.18	0.01	2.779	0.00	0.00	14.3	85.7	0.0	-0.15	0.12	0.70	7.51	3.0	0.060	1.79	1.0	0.22	23.53	0.02	2.477	0.00	25.00	0.0	100.0	0.0	-6.32	1.38	0.19	0.79	5.31	69	9	1	0	0	0	0	logfile
✔	8JVH	36674	2025-02-14	2023-06-28	3.19	3.79	3.33	3.7	0.005	0.78	0.0	0.05	9.56	0.00	2.195	2.24	0.18	8.6	91.4	0.0	-4.48	0.65	0.74	1.98	3.7	0.003	0.58	0.0	0.04	13.90	0.00	2.493	3.71	1.20	5.5	94.5	0.0	-0.81	1.33	0.63	0.75	1.29	9699	1205	1	0	0	0	0	logfile
✔	8H4U	34484	2025-02-12	2022-10-11	3.5	3.38	3.50	3.4	0.002	0.59	0.0	0.04	18.36	0.00	2.218	8.59	1.28	5.1	94.9	0.0	0.05	0.75	0.82	1.33	3.4	0.003	0.60	0.0	0.04	18.58	0.00	2.314	7.33	2.45	5.7	94.3	0.0	1.72	1.31	0.74	0.81	0.55	7944	959	1	0	0	0	0	logfile
✔	7ABK	11698	2025-02-10	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.004	0.65	0.0	0.03	19.60	0.00	2.520	5.04	4.32	2.1	97.9	0.0	4.82	1.54	0.28	0.86	1.10	1574	196	1	0	0	0	0	logfile
✔	8PD3	17599	2025-02-12	2023-06-11	3.3	2.29	3.23	2.1	0.003	0.56	0.0	0.04	13.67	0.00	2.227	4.23	0.00	1.3	98.7	0.0	0.70	0.61	0.78	2.84	2.1	0.004	0.54	0.0	0.04	15.56	0.00	2.556	4.95	2.15	2.0	98.0	0.0	2.35	0.49	0.67	0.82	2.14	8121	1028	1	0	0	0	0	logfile
✔	8P34	17383	2025-02-10	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.002	0.47	0.0	0.05	14.27	0.00	2.698	0.69	0.00	3.3	96.7	0.0	-1.59	0.32	0.28	0.88	6.21	711	94	1	0	0	0	0	logfile
✔	8QSN	18637	2025-02-11	2023-10-10	3.54	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	4.0	0.003	0.91	0.0	0.05	15.75	0.00	2.482	15.76	2.95	3.5	96.5	0.0	1.66	1.46	0.56	0.77	1.37	3579	464	1	0	0	0	0	logfile
✔	8EHX	28154	2025-02-11	2022-09-14	3.6	3.90	3.67	3.9	0.005	0.80	0.0	0.05	17.02	0.01	2.214	13.59	0.00	8.5	91.3	0.2	0.14	0.58	0.79	0.78	3.9	0.003	0.69	0.0	0.04	17.88	0.01	2.476	9.74	4.28	7.2	92.6	0.2	1.14	1.52	0.56	0.78	0.82	5153	631	1	0	0	0	0	logfile
✔	8EHW	28153	2025-02-11	2022-09-14	3.8	4.10	3.62	4.0	0.006	0.97	1.0	0.05	16.57	0.01	2.239	16.20	0.18	8.3	91.7	0.0	-0.97	0.58	0.76	1.15	4.0	0.003	0.79	0.0	0.04	17.27	0.00	2.539	13.02	3.86	5.1	94.9	0.0	0.64	0.58	0.58	0.76	1.44	5150	630	1	0	0	0	0	logfile
✔	8SZ7	40902	2025-02-11	2023-05-27	2.84	3.08	2.87	3.6	0.003	0.46	0.0	0.04	9.67	0.00	2.393	1.99	0.00	0.9	99.1	0.0	1.11	0.17	0.20	2.22	3.2	0.005	0.72	0.0	0.04	12.89	0.00	2.460	4.23	1.36	3.4	96.6	0.0	1.82	1.13	0.44	0.68	1.14	4026	240	1	0	0	0	2021	logfile
✔	8JGA	36228	2025-02-10	2023-05-20	3.68	3.83	3.25	3.8	0.005	0.81	0.0	0.05	14.34	0.01	2.230	16.80	1.24	7.0	92.5	0.5	-2.18	0.58	0.81	2.54	3.8	0.003	0.71	0.0	0.05	16.30	0.00	2.639	9.37	2.48	4.5	95.5	0.0	-1.11	0.44	0.57	0.80	2.22	1516	202	1	0	0	0	0	logfile
✔	8PD2	17598	2025-02-12	2023-06-11	3.25	2.29	3.19	2.1	0.004	0.52	0.0	0.04	12.99	0.00	2.322	3.02	0.00	1.4	98.6	0.0	0.72	0.62	0.78	3.03	2.1	0.004	0.56	0.0	0.04	16.04	0.00	2.495	4.56	2.22	1.5	98.5	0.0	2.47	0.98	0.68	0.82	2.54	8270	1047	1	0	0	0	0	logfile
✔	8HRN	34979	2025-02-11	2022-12-15	3.9	4.18	3.98	4.0	0.005	0.91	0.0	0.05	17.07	0.01	2.080	24.49	0.95	3.4	96.6	0.0	-1.15	0.76	0.69	0.78	4.0	0.004	0.76	0.0	0.04	17.86	0.00	2.549	15.24	3.04	2.5	97.5	0.0	-0.18	1.57	0.76	0.69	0.45	4870	597	1	0	0	0	0	logfile
✔	8XoB	38525	2025-02-10	2023-12-31	3.15	3.40	3.18	3.4	0.005	0.80	0.0	0.04	12.87	0.01	2.358	3.44	0.00	4.2	95.8	0.0	-1.77	0.62	0.83	2.37	3.4	0.003	0.69	0.0	0.04	14.59	0.01	2.585	2.41	1.67	3.7	96.3	0.0	2.24	0.30	0.60	0.84	1.08	2858	387	1	0	0	0	0	logfile
✔	8TiF	41286	2025-02-10	2023-07-19	3.89	3.95	3.71	4.1	0.005	0.55	0.0	0.04	17.04	0.00	2.317	8.78	1.02	1.6	98.4	0.0	0.15	0.23	0.85	1.30	4.1	0.004	0.54	0.0	0.04	17.08	0.00	2.619	4.39	5.10	1.6	98.4	0.0	0.67	0.30	0.22	0.85	3.19	889	131	1	0	0	0	0	logfile

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