Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QEY	13944	2025-02-14	2021-12-03	2.0	2.46	—	2.2	0.005	0.85	0.0	0.03	10.53	0.00	2.199	3.57	2.35	1.7	98.3	0.0	1.74	0.77	0.90	5.27	2.2	0.003	0.69	0.0	0.04	13.46	0.00	2.549	3.68	2.15	2.2	97.8	0.0	3.47	1.01	0.78	0.92	3.81	9467	1092	18	0	30	281	0	logfile
✔	8Y85	39034	2025-02-12	2024-02-05	2.73	2.89	2.74	3.0	0.004	0.76	4.0	0.04	16.59	0.01	2.314	3.19	0.68	2.5	97.5	0.0	2.04	0.59	0.78	2.03	3.0	0.003	0.57	0.0	0.04	16.88	0.01	2.615	2.35	1.94	2.5	97.5	0.0	2.43	0.23	0.59	0.78	1.83	8116	1028	4	0	4	0	0	logfile
✔	8K0M	36774	2025-02-14	2023-07-09	3.17	3.37	3.20	3.4	0.003	0.57	0.0	0.04	17.60	0.00	1.975	4.27	0.39	4.0	95.8	0.2	0.17	0.67	0.81	2.08	3.4	0.002	0.53	0.0	0.04	17.75	0.00	2.043	3.85	2.86	4.3	95.7	0.0	1.11	0.29	0.65	0.79	1.42	9641	1186	5	0	6	0	0	logfile
✔	7ZE3	14682	2025-02-14	2022-03-30	2.7	2.61	2.65	2.7	0.007	1.01	0.0	0.04	13.71	0.01	2.231	3.86	0.00	1.3	98.7	0.0	0.75	0.69	0.85	4.12	2.7	0.003	0.72	0.0	0.04	15.98	0.00	1.958	4.88	1.35	1.5	98.5	0.0	3.19	0.42	0.69	0.85	2.84	10285	967	54	0	42	37	0	logfile
✔	7QEW	13943	2025-02-14	2021-12-03	2.1	2.62	—	2.2	0.005	0.86	0.0	0.03	11.15	0.00	2.191	3.73	2.18	3.3	96.7	0.0	1.32	0.78	0.89	4.62	2.3	0.003	0.66	0.0	0.04	14.43	0.00	2.565	5.15	2.28	2.7	97.3	0.0	3.06	1.34	0.79	0.92	3.36	9702	1128	18	0	30	234	0	logfile
✔	7Wo7	32641	2025-02-11	2022-01-20	3.8	3.99	—	3.9	0.003	0.71	0.0	0.04	11.24	0.00	2.163	6.93	8.82	9.7	90.3	0.0	-4.70	0.72	0.74	1.98	3.9	0.003	0.73	0.0	0.05	15.21	0.01	2.535	11.86	4.23	14.3	85.7	0.0	-3.40	1.79	0.74	0.76	2.02	4870	634	4	0	1	0	0	logfile
✔	7EZ0	31385	2025-02-12	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	23.64	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.008	0.80	0.0	0.04	23.88	0.01	1.829	6.42	0.00	0.0	0.0	0.0	—	1.91	0.77	0.86	—	8306	0	2	387	27	0	0	logfile
✔	6ZG1	11191	2025-02-14	2020-06-18	3.77	4.58	—	4.3	0.010	1.61	6.0	0.11	18.79	0.01	2.449	4.87	5.94	2.0	97.9	0.1	-1.53	0.76	0.67	0.74	4.3	0.004	0.98	0.0	0.05	18.00	0.00	2.404	16.26	2.83	5.1	94.9	0.0	-0.17	1.62	0.78	0.80	1.18	9931	1175	16	0	28	0	0	logfile
✔	8AZ6	15755	2025-02-11	2022-09-05	3.1	3.15	3.07	3.1	0.004	0.43	0.0	0.04	9.46	0.00	2.212	5.45	0.00	4.8	95.2	0.0	-4.04	0.50	0.84	6.14	3.1	0.003	0.56	0.0	0.04	13.93	0.00	2.301	2.12	4.21	4.5	95.5	0.0	-4.92	0.73	0.51	0.87	6.03	3420	460	40	0	20	0	0	logfile
✔	8K3H	36851	2025-02-12	2023-07-15	2.86	2.80	2.67	2.8	0.003	0.52	0.0	0.04	15.58	0.00	2.237	4.01	0.00	2.1	97.9	0.0	0.44	0.76	0.89	3.98	2.8	0.003	0.53	0.0	0.04	15.56	0.00	2.559	2.86	0.92	1.8	98.2	0.0	1.46	0.28	0.77	0.90	3.94	7460	960	4	0	2	0	0	logfile
✔	7EFC	31083	2025-02-11	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	14.88	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	1.9	0.005	0.82	0.0	0.05	14.74	0.00	2.549	6.44	0.27	4.4	95.6	0.0	-0.14	0.93	0.80	0.85	6.60	4004	480	8	0	4	156	0	logfile
✔	7QiC	13987	2025-02-11	2021-12-14	4.1	4.27	4.00	4.2	0.003	0.65	0.0	0.04	12.83	0.00	2.221	13.06	0.20	7.7	92.3	0.0	-0.78	0.64	0.79	—	4.2	0.003	0.65	0.0	0.04	12.66	0.00	2.501	12.14	0.00	7.6	92.4	0.0	0.10	1.37	0.64	0.79	—	4841	639	4	0	1	0	0	logfile
✔	6T6V	10387	2025-02-11	2019-10-19	4.5	4.58	—	4.5	0.009	1.34	1.0	0.08	15.46	0.01	1.944	15.31	0.00	6.4	93.6	0.0	-4.09	0.63	0.78	—	4.5	0.005	0.89	0.0	0.05	14.32	0.01	2.203	15.65	0.00	5.8	94.2	0.0	-0.27	1.25	0.63	0.79	—	5868	742	2	0	3	0	0	logfile
✔	7BSU	30167	2025-02-14	2020-03-31	3.2	3.35	—	3.3	0.006	0.61	0.0	0.04	20.44	0.01	1.626	31.07	7.59	7.6	92.4	0.0	-6.52	0.59	0.85	3.64	3.3	0.003	0.67	0.0	0.04	17.96	0.00	2.063	6.86	3.84	3.8	96.2	0.0	-1.08	0.94	0.64	0.88	3.55	9325	1138	4	0	7	0	0	logfile
✔	7QiA	13985	2025-02-11	2021-12-14	3.5	3.73	3.29	3.6	0.003	0.60	0.0	0.04	12.91	0.00	2.259	11.63	0.00	7.9	92.1	0.0	-1.03	0.65	0.80	1.56	3.7	0.003	0.59	0.0	0.04	14.61	0.00	2.581	10.92	1.59	7.1	92.9	0.0	-0.29	1.33	0.62	0.79	1.16	4843	639	4	0	0	3	0	logfile
✔	7YiM	33861	2025-02-11	2022-07-17	2.6	2.93	2.77	2.9	0.013	1.14	0.0	0.07	15.89	0.01	2.272	6.72	0.78	4.9	95.1	0.0	-4.17	0.67	0.68	1.25	2.9	0.005	0.70	0.0	0.04	17.83	0.00	2.426	10.84	1.55	3.4	96.6	0.0	0.32	1.23	0.65	0.68	1.21	4657	592	1	0	0	0	0	logfile
✔	6S5T	10100	2025-02-12	2019-07-02	4.15	4.28	4.17	4.2	0.007	1.48	3.0	0.09	17.70	0.00	2.450	5.08	3.93	7.1	92.4	0.6	-4.05	0.75	0.84	—	4.2	0.003	0.67	0.0	0.04	15.43	0.00	2.522	7.51	0.14	3.6	96.4	0.0	0.36	1.14	0.74	0.80	—	6958	896	3	0	1	0	0	logfile
✔	7YHo	33832	2025-02-11	2022-07-14	3.3	3.49	3.34	3.3	0.005	0.74	1.0	0.07	23.57	0.00	2.273	11.12	8.78	4.0	96.0	0.0	0.44	0.74	0.72	1.30	3.3	0.004	0.66	0.0	0.04	23.71	0.00	2.534	14.25	3.45	4.9	95.1	0.0	0.09	0.86	0.75	0.75	1.48	3923	361	4	49	1	0	0	logfile
✔	7BSV	30168	2025-02-14	2020-03-31	3.0	3.16	—	3.1	0.005	1.15	0.0	0.05	19.27	0.01	1.809	30.62	6.19	7.6	92.2	0.2	-6.02	0.61	0.86	4.20	3.1	0.003	0.90	0.0	0.04	17.78	0.00	1.349	7.44	2.46	5.3	94.7	0.0	-0.38	0.99	0.63	0.88	3.42	9339	1139	6	0	8	4	0	logfile
✔	8Y6J	38988	2025-02-11	2024-02-02	3.46	3.69	3.47	3.7	0.003	0.55	0.0	0.04	16.14	0.00	2.181	6.75	0.00	3.3	96.7	0.0	3.00	0.58	0.79	1.79	3.7	0.003	0.52	0.0	0.04	16.71	0.00	2.567	6.38	3.07	4.3	95.7	0.0	3.49	0.23	0.57	0.79	1.51	6650	850	2	0	0	0	0	logfile

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