Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VL9	32021	2025-02-14	2021-10-02	2.6	2.71	—	2.8	0.007	0.96	2.0	0.06	13.15	0.01	2.176	8.25	0.10	2.9	97.1	0.0	0.32	0.68	0.79	4.33	2.7	0.003	0.58	0.0	0.04	15.96	0.00	2.550	5.12	2.19	2.8	97.2	0.0	1.25	1.19	0.69	0.82	3.59	9605	1214	7	0	1	0	0	logfile
✔	7X9Y	33085	2025-02-13	2022-03-16	3.1	2.46	—	2.2	0.003	0.49	1.0	0.04	12.62	0.00	1.932	4.86	0.31	3.0	97.0	0.0	2.03	0.73	0.73	1.91	2.1	0.003	0.64	0.0	0.04	16.13	0.00	2.561	9.28	2.96	3.7	96.3	0.0	1.28	0.54	0.74	0.76	1.58	8982	1137	5	0	0	0	0	logfile
✔	8HDP	34677	2025-02-12	2022-11-05	3.2	3.72	3.07	3.5	0.003	0.76	0.0	0.08	12.51	0.00	2.006	7.86	0.57	2.7	97.3	0.0	-1.79	0.67	0.75	1.99	3.5	0.003	0.80	0.0	0.06	15.40	0.00	2.470	9.31	2.96	2.8	97.2	0.0	0.70	2.05	0.70	0.82	1.94	8282	1041	6	0	5	0	0	logfile
✔	7VR1	32096	2025-02-13	2021-10-21	3.4	3.67	—	3.6	0.003	0.55	0.0	0.04	13.99	0.00	2.253	7.05	0.00	5.8	94.2	0.0	-0.76	0.68	0.84	1.98	3.6	0.002	0.60	0.0	0.04	15.57	0.00	2.540	5.06	1.19	5.3	94.7	0.0	0.80	0.35	0.68	0.85	1.39	9522	1196	2	0	0	0	0	logfile
✔	7ZDZ	14678	2025-02-14	2022-03-30	4.3	4.37	4.35	4.3	0.003	0.86	0.0	0.05	15.05	0.00	2.192	12.57	0.35	11.1	88.6	0.3	-1.61	0.64	0.70	—	4.3	0.004	0.78	0.0	0.05	14.95	0.00	2.528	14.70	0.00	13.6	86.3	0.2	-2.07	1.77	0.65	0.73	—	10369	1292	6	0	3	0	0	logfile
✔	8WX3	37899	2025-02-12	2023-10-27	2.83	2.64	2.76	2.9	0.003	0.70	0.0	0.04	12.63	0.00	2.206	5.93	0.00	3.3	96.5	0.2	0.51	0.41	0.73	2.66	2.8	0.003	0.60	0.0	0.04	15.14	0.00	2.576	5.79	2.94	3.5	96.3	0.2	1.41	1.81	0.56	0.84	2.70	7498	974	2	0	0	0	0	logfile
✔	8A06	15051	2025-02-10	2022-05-26	4.0	3.63	3.78	3.8	0.003	0.56	0.0	0.05	13.75	0.00	2.201	6.79	0.73	2.8	97.2	0.0	-0.86	0.27	0.78	—	3.7	0.004	0.66	0.0	0.05	17.36	0.00	2.615	4.67	10.22	4.1	95.9	0.0	-1.29	0.41	0.26	0.80	—	1185	147	1	0	0	0	0	logfile
✔	6PW9	20501	2025-02-13	2019-07-22	4.03	4.12	—	4.1	0.007	1.23	0.0	0.24	15.09	0.01	1.781	6.70	1.81	4.4	95.6	0.0	-4.47	0.71	0.70	—	4.1	0.003	0.80	0.0	0.05	14.27	0.00	2.368	11.01	0.00	3.2	96.8	0.0	-1.03	2.49	0.72	0.73	—	8836	1075	5	0	3	0	0	logfile
✔	6iWW	9743	2025-02-14	2018-12-08	3.9	3.82	—	3.8	0.008	1.09	0.0	0.06	13.48	0.01	2.301	5.79	0.00	4.2	95.8	0.0	-4.19	0.63	0.81	2.15	3.8	0.003	0.76	0.0	0.04	15.49	0.01	2.440	13.93	1.92	3.3	96.7	0.0	0.75	1.51	0.64	0.82	1.11	10227	1386	9	0	3	0	0	logfile
✔	6VYH	21460	2025-02-11	2020-02-26	3.0	3.13	—	3.1	0.013	1.11	1.0	0.06	14.40	0.01	1.922	11.42	2.00	8.8	90.0	1.2	-4.54	0.66	0.81	2.78	3.1	0.003	0.70	0.0	0.04	16.24	0.00	2.035	5.15	3.63	4.7	94.9	0.4	-0.20	0.58	0.64	0.81	2.24	6093	860	5	0	2	1	0	logfile
✔	7AXZ	11933	2025-02-12	2020-11-10	3.2	3.26	—	3.5	0.009	0.87	0.0	0.05	14.88	0.01	1.911	11.53	0.00	10.2	89.8	0.0	-2.73	0.75	0.78	2.55	3.5	0.003	0.64	0.0	0.04	17.04	0.00	2.369	8.81	1.30	3.0	97.0	0.0	-0.65	1.60	0.75	0.79	2.10	8225	1023	2	0	0	0	0	logfile
✔	8A02	15045	2025-02-11	2022-05-26	3.2	3.27	3.19	3.3	0.003	0.47	0.0	0.05	14.61	0.00	2.264	4.31	0.00	2.0	98.0	0.0	0.16	0.53	0.84	2.28	3.3	0.004	0.56	0.0	0.05	17.34	0.00	2.590	3.86	3.97	2.8	97.0	0.1	-0.41	0.26	0.51	0.86	2.61	5511	717	3	0	0	0	0	logfile
✔	7C2E	30274	2025-02-13	2020-05-07	4.2	4.27	—	4.2	0.004	0.80	0.0	0.05	9.29	0.01	2.071	4.42	0.00	4.9	95.1	0.0	-3.36	0.63	0.67	—	4.2	0.004	0.76	0.0	0.05	12.77	0.00	2.488	17.91	0.21	6.3	93.7	0.0	-0.74	2.64	0.66	0.73	—	8828	1094	6	0	1	0	0	logfile
✔	7D68	30590	2025-02-13	2020-09-29	3.0	3.24	—	3.3	0.004	0.66	0.0	0.05	13.07	0.00	2.121	7.98	0.76	4.8	95.1	0.1	-2.09	0.62	0.77	3.53	3.2	0.002	0.54	0.0	0.04	15.96	0.00	2.521	4.58	2.16	3.3	96.7	0.0	0.57	0.49	0.62	0.78	2.38	8564	1070	8	0	0	7	0	logfile
✔	7Y5Z	33629	2025-02-14	2022-06-18	3.4	3.66	3.34	3.5	0.008	1.03	0.0	0.06	14.62	0.01	2.210	4.56	0.96	7.2	92.8	0.0	-4.63	0.66	0.83	3.22	3.5	0.003	0.69	0.0	0.04	14.59	0.00	2.295	6.57	4.05	4.8	95.2	0.0	-0.22	1.69	0.67	0.84	2.42	9962	1214	13	0	25	0	0	logfile
✔	8B0P	15791	2025-02-12	2022-09-07	2.86	3.13	2.92	3.1	0.003	0.55	2.0	0.34	12.11	0.01	2.235	5.12	0.97	3.2	96.6	0.2	-0.43	0.58	0.84	4.71	3.1	0.002	0.55	0.0	0.04	14.24	0.00	2.595	6.37	0.24	3.2	96.8	0.0	0.61	0.90	0.55	0.83	4.27	4016	510	3	0	1	0	0	logfile
✔	6MGV	9112	2025-02-14	2018-09-15	3.1	3.21	3.10	3.2	0.018	1.44	0.0	0.08	9.73	0.01	2.082	2.85	0.00	3.4	96.5	0.2	-0.38	0.70	0.83	4.59	3.2	0.003	0.59	0.0	0.04	14.01	0.00	2.544	5.65	1.32	3.5	96.5	0.0	1.63	2.11	0.66	0.83	2.81	10150	1268	2	0	0	0	0	logfile
✔	7Y26	33586	2025-02-12	2022-06-09	3.3	3.67	3.39	3.7	0.003	0.57	0.0	0.04	12.62	0.00	2.203	4.71	0.00	3.0	97.0	0.0	0.69	0.66	0.80	3.02	3.7	0.002	0.53	0.0	0.04	14.55	0.00	2.529	3.60	1.45	2.1	97.9	0.0	0.87	0.37	0.66	0.80	2.41	8014	1111	7	0	2	0	0	logfile
✔	6LYY	30019	2025-02-11	2020-02-16	3.2	3.40	—	3.9	0.010	1.16	9.0	0.10	13.41	0.01	2.152	14.46	0.90	8.3	91.7	0.0	-3.75	0.38	0.51	1.45	3.7	0.004	0.75	0.0	0.04	15.84	0.00	2.528	8.78	5.99	4.2	95.8	0.0	0.48	1.64	0.45	0.67	1.89	4104	597	3	0	1	0	0	logfile
✔	7Y7W	33672	2025-02-11	2022-06-22	2.4	2.70	2.46	2.7	0.006	0.78	0.0	0.08	17.20	0.00	1.907	5.88	1.11	3.0	97.0	0.0	0.06	0.68	0.85	4.04	2.7	0.003	0.57	0.0	0.04	16.62	0.00	2.192	3.29	3.34	1.9	98.1	0.0	1.77	1.15	0.70	0.87	4.03	4310	529	2	0	7	48	0	logfile

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