Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EoB	28333	2025-02-14	2022-10-02	3.1	3.53	3.19	3.4	0.005	0.61	0.0	0.04	11.57	0.00	1.945	7.00	1.78	2.6	97.4	0.0	0.42	0.76	0.84	3.12	3.4	0.002	0.51	0.0	0.04	14.20	0.00	1.997	5.47	1.51	2.2	97.8	0.0	1.14	0.53	0.75	0.83	2.46	10141	1245	4	0	4	0	0	logfile
✔	7SAT	24956	2025-02-12	2021-09-23	3.9	3.85	3.80	3.8	0.004	0.76	0.0	0.04	14.44	0.00	2.080	15.57	0.28	7.4	92.6	0.0	0.06	0.61	0.77	1.82	3.8	0.004	0.87	0.0	0.04	17.20	0.00	2.386	14.67	3.10	5.9	94.1	0.0	0.43	0.59	0.62	0.77	1.43	6581	822	7	0	0	0	0	logfile
✔	7EZM	31389	2025-02-13	2021-06-01	2.9	2.20	—	2.0	0.011	1.07	1.0	0.07	13.16	0.01	2.228	4.78	0.94	3.8	96.2	0.0	-0.87	0.76	0.76	3.60	2.0	0.003	0.66	0.0	0.04	16.10	0.00	2.461	10.34	3.13	2.3	97.7	0.0	0.71	0.61	0.78	0.80	3.10	9008	1171	6	0	0	0	0	logfile
✔	7F9Y	31500	2025-02-14	2021-07-05	2.9	2.26	—	2.2	0.003	0.55	0.0	0.04	12.55	0.00	1.951	5.33	0.00	1.2	98.8	0.0	1.79	0.73	0.74	2.95	2.0	0.003	0.56	0.0	0.04	15.54	0.00	2.473	4.67	2.65	1.7	98.3	0.0	1.30	0.48	0.76	0.79	2.90	8354	1051	8	0	3	0	0	logfile
✔	6VU5	21387	2025-02-11	2020-02-14	3.5	3.59	3.38	3.5	0.007	0.99	0.0	0.06	15.26	0.01	2.230	8.37	0.00	9.0	91.0	0.0	-4.94	0.72	0.75	1.82	3.5	0.003	0.72	0.0	0.04	16.95	0.00	2.578	12.18	3.99	5.9	94.1	0.0	-2.07	0.55	0.72	0.73	1.66	4657	576	3	0	27	0	0	logfile
✔	8J8L	36073	2025-02-12	2023-05-02	3.56	4.58	3.58	4.1	0.004	0.69	0.0	0.06	17.56	0.02	2.207	9.58	0.89	4.5	95.5	0.0	0.16	0.67	0.82	1.57	4.1	0.003	0.72	0.0	0.04	16.04	0.00	2.563	8.56	1.52	4.3	95.7	0.0	1.30	0.55	0.66	0.83	1.66	7361	933	7	0	8	0	0	logfile
✔	7KNT	22962	2025-02-11	2020-11-06	3.15	4.00	3.32	3.7	0.004	0.75	0.0	0.05	14.56	0.00	2.116	11.51	0.74	3.6	96.4	0.0	-0.48	0.58	0.75	1.64	3.7	0.003	0.70	0.0	0.04	16.20	0.00	2.521	10.16	3.21	3.4	96.6	0.0	0.42	0.96	0.57	0.76	0.54	3716	455	2	0	0	0	0	logfile
✔	7F2o	31429	2025-02-13	2021-06-11	2.9	2.20	—	2.1	0.003	0.57	0.0	0.04	12.79	0.01	2.194	5.71	0.41	3.2	96.8	0.0	-0.75	0.70	0.68	3.19	2.0	0.003	0.68	0.0	0.04	16.03	0.00	2.409	10.80	2.95	2.7	97.3	0.0	0.53	0.65	0.75	0.77	2.70	9004	1150	6	0	0	0	0	logfile
✔	6VX4	21429	2025-02-14	2020-02-21	3.12	3.57	3.17	3.4	0.002	0.43	0.0	0.04	12.96	0.00	2.173	11.38	0.38	8.1	91.9	0.0	-4.73	0.80	0.73	1.78	3.3	0.006	0.82	0.0	0.05	16.22	0.01	2.360	20.37	3.38	6.6	93.4	0.0	-1.49	1.46	0.84	0.83	2.51	9813	1265	9	0	0	0	0	logfile
✔	7VL9	32021	2025-02-14	2021-10-02	2.6	2.71	—	2.8	0.007	0.96	2.0	0.06	13.15	0.01	2.176	8.25	0.10	2.9	97.1	0.0	0.32	0.68	0.79	4.33	2.7	0.003	0.58	0.0	0.04	15.96	0.00	2.550	5.12	2.19	2.8	97.2	0.0	1.25	1.19	0.69	0.82	3.59	9605	1214	7	0	1	0	0	logfile
✔	7P1i	13161	2025-02-11	2021-07-01	3.15	4.49	3.18	4.4	0.002	0.57	0.0	0.04	11.18	0.00	2.265	8.39	5.90	4.3	95.7	0.0	3.38	0.55	0.71	0.60	4.4	0.004	1.08	0.0	0.05	15.35	0.00	2.456	20.49	4.07	6.6	93.4	0.0	0.36	0.97	0.57	0.73	0.45	6644	884	2	0	0	0	0	logfile
✔	7X9Y	33085	2025-02-13	2022-03-16	3.1	2.46	—	2.2	0.003	0.49	1.0	0.04	12.62	0.00	1.932	4.86	0.31	3.0	97.0	0.0	2.03	0.73	0.73	1.91	2.1	0.003	0.64	0.0	0.04	16.13	0.00	2.561	9.28	2.96	3.7	96.3	0.0	1.28	0.54	0.74	0.76	1.58	8982	1137	5	0	0	0	0	logfile
✔	8HDP	34677	2025-02-12	2022-11-05	3.2	3.72	3.07	3.5	0.003	0.76	0.0	0.08	12.51	0.00	2.006	7.86	0.57	2.7	97.3	0.0	-1.79	0.67	0.75	1.99	3.5	0.003	0.80	0.0	0.06	15.40	0.00	2.470	9.31	2.96	2.8	97.2	0.0	0.70	2.05	0.70	0.82	1.94	8282	1041	6	0	5	0	0	logfile
✔	7VR1	32096	2025-02-13	2021-10-21	3.4	3.67	—	3.6	0.003	0.55	0.0	0.04	13.99	0.00	2.253	7.05	0.00	5.8	94.2	0.0	-0.76	0.68	0.84	1.98	3.6	0.002	0.60	0.0	0.04	15.57	0.00	2.540	5.06	1.19	5.3	94.7	0.0	0.80	0.35	0.68	0.85	1.39	9522	1196	2	0	0	0	0	logfile
✔	7ZDZ	14678	2025-02-14	2022-03-30	4.3	4.37	4.35	4.3	0.003	0.86	0.0	0.05	15.05	0.00	2.192	12.57	0.35	11.1	88.6	0.3	-1.61	0.64	0.70	—	4.3	0.004	0.78	0.0	0.05	14.95	0.00	2.528	14.70	0.00	13.6	86.3	0.2	-2.07	1.77	0.65	0.73	—	10369	1292	6	0	3	0	0	logfile
✔	8WX3	37899	2025-02-12	2023-10-27	2.83	2.64	2.76	2.9	0.003	0.70	0.0	0.04	12.63	0.00	2.206	5.93	0.00	3.3	96.5	0.2	0.51	0.41	0.73	2.66	2.8	0.003	0.60	0.0	0.04	15.14	0.00	2.576	5.79	2.94	3.5	96.3	0.2	1.41	1.81	0.56	0.84	2.70	7498	974	2	0	0	0	0	logfile
✔	8A06	15051	2025-02-10	2022-05-26	4.0	3.63	3.78	3.8	0.003	0.56	0.0	0.05	13.75	0.00	2.201	6.79	0.73	2.8	97.2	0.0	-0.86	0.27	0.78	—	3.7	0.004	0.66	0.0	0.05	17.36	0.00	2.615	4.67	10.22	4.1	95.9	0.0	-1.29	0.41	0.26	0.80	—	1185	147	1	0	0	0	0	logfile
✔	6PW9	20501	2025-02-13	2019-07-22	4.03	4.12	—	4.1	0.007	1.23	0.0	0.24	15.09	0.01	1.781	6.70	1.81	4.4	95.6	0.0	-4.47	0.71	0.70	—	4.1	0.003	0.80	0.0	0.05	14.27	0.00	2.368	11.01	0.00	3.2	96.8	0.0	-1.03	2.49	0.72	0.73	—	8836	1075	5	0	3	0	0	logfile
✔	6iWW	9743	2025-02-14	2018-12-08	3.9	3.82	—	3.8	0.008	1.09	0.0	0.06	13.48	0.01	2.301	5.79	0.00	4.2	95.8	0.0	-4.19	0.63	0.81	2.15	3.8	0.003	0.76	0.0	0.04	15.49	0.01	2.440	13.93	1.92	3.3	96.7	0.0	0.75	1.51	0.64	0.82	1.11	10227	1386	9	0	3	0	0	logfile
✔	6VYH	21460	2025-02-11	2020-02-26	3.0	3.13	—	3.1	0.013	1.11	1.0	0.06	14.40	0.01	1.922	11.42	2.00	8.8	90.0	1.2	-4.54	0.66	0.81	2.78	3.1	0.003	0.70	0.0	0.04	16.24	0.00	2.035	5.15	3.63	4.7	94.9	0.4	-0.20	0.58	0.64	0.81	2.24	6093	860	5	0	2	1	0	logfile

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