Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YiM	33861	2025-02-11	2022-07-17	2.6	2.93	2.77	2.9	0.013	1.14	0.0	0.07	15.89	0.01	2.272	6.72	0.78	4.9	95.1	0.0	-4.17	0.67	0.68	1.25	2.9	0.005	0.70	0.0	0.04	17.83	0.00	2.426	10.84	1.55	3.4	96.6	0.0	0.32	1.23	0.65	0.68	1.21	4657	592	1	0	0	0	0	logfile
✔	7NKQ	12446	2025-02-14	2021-02-18	2.98	3.25	—	3.1	0.004	0.49	0.0	0.04	13.52	0.00	2.018	7.16	0.00	2.7	97.3	0.0	1.39	0.81	0.81	2.98	3.1	0.002	0.51	0.0	0.04	15.83	0.00	2.363	4.80	0.52	2.1	97.9	0.0	1.94	0.32	0.82	0.84	2.49	10621	714	8	0	0	0	5312	logfile
✔	7V4B	31706	2025-02-10	2021-08-12	3.1	3.04	—	3.1	0.006	0.60	0.0	0.05	14.55	0.00	2.375	15.32	0.00	13.2	86.8	0.0	-5.99	0.41	0.69	2.66	3.2	0.003	0.57	0.0	0.05	17.29	0.00	2.619	7.88	7.14	7.9	92.1	0.0	-4.89	0.68	0.40	0.68	2.60	3336	480	6	0	0	0	0	logfile
✔	7QiA	13985	2025-02-11	2021-12-14	3.5	3.73	3.29	3.6	0.003	0.60	0.0	0.04	12.91	0.00	2.259	11.63	0.00	7.9	92.1	0.0	-1.03	0.65	0.80	1.56	3.7	0.003	0.59	0.0	0.04	14.61	0.00	2.581	10.92	1.59	7.1	92.9	0.0	-0.29	1.33	0.62	0.79	1.16	4843	639	4	0	0	3	0	logfile
✔	8Y6J	38988	2025-02-11	2024-02-02	3.46	3.69	3.47	3.7	0.003	0.55	0.0	0.04	16.14	0.00	2.181	6.75	0.00	3.3	96.7	0.0	3.00	0.58	0.79	1.79	3.7	0.003	0.52	0.0	0.04	16.71	0.00	2.567	6.38	3.07	4.3	95.7	0.0	3.49	0.23	0.57	0.79	1.51	6650	850	2	0	0	0	0	logfile
✔	7WH8	32497	2025-02-11	2021-12-30	3.11	3.31	—	3.2	0.004	0.71	1.0	0.05	14.34	0.01	2.233	11.28	2.61	8.6	91.0	0.4	-2.16	0.70	0.79	3.20	3.3	0.006	0.77	0.0	0.05	15.89	0.00	2.539	6.01	2.61	9.4	90.6	0.0	-1.44	1.19	0.70	0.82	3.66	5479	715	3	0	0	0	0	logfile
✔	9CX3	45977	2025-02-11	2024-07-30	3.47	3.60	3.43	3.5	0.005	0.71	0.0	0.04	15.76	0.00	2.201	11.22	0.16	5.2	94.8	0.0	-1.54	0.72	0.67	1.75	3.5	0.004	0.72	0.0	0.04	17.09	0.00	2.497	13.02	5.91	6.5	93.5	0.0	-1.84	0.57	0.75	0.71	2.02	5626	720	6	0	0	0	0	logfile
✔	7R0J	14223	2025-02-11	2022-02-02	4.23	4.64	4.43	4.4	0.008	1.03	0.0	0.05	13.44	0.01	2.029	37.19	0.20	8.8	91.2	0.0	-0.99	0.76	0.79	—	4.4	0.003	0.71	0.0	0.04	13.57	0.00	2.489	15.53	0.00	5.5	94.5	0.0	-0.56	0.61	0.75	0.79	—	4669	596	3	0	0	0	0	logfile
✔	8JGG	36233	2025-02-12	2023-05-20	3.0	3.29	3.17	3.2	0.006	0.94	0.0	0.05	14.77	0.00	2.288	9.81	1.05	5.8	94.2	0.0	-1.51	0.60	0.81	3.17	3.2	0.003	0.58	0.0	0.04	15.52	0.00	2.541	3.99	3.03	3.4	96.6	0.0	-0.11	0.37	0.63	0.83	2.85	7889	1076	6	0	0	0	0	logfile
✔	7R88	24311	2025-02-14	2021-06-26	3.5	3.76	—	3.7	0.002	0.45	0.0	0.04	12.49	0.00	2.274	5.35	1.02	3.5	96.5	0.0	-1.50	0.69	0.85	2.38	3.7	0.005	0.64	0.0	0.04	15.02	0.00	2.408	5.16	2.54	5.3	94.7	0.0	1.25	1.33	0.71	0.89	2.99	10787	1368	4	0	0	0	0	logfile
✔	7KPW	22990	2025-02-11	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.003	0.69	0.0	0.04	4.95	0.00	2.464	0.66	0.00	11.4	88.2	0.5	0.76	2.01	0.82	0.81	—	4313	865	1	0	0	0	0	logfile
✔	6T7D	10394	2025-02-12	2019-10-21	4.4	4.45	4.29	4.1	0.005	0.86	0.0	0.05	32.58	0.01	2.107	2.55	0.00	2.0	98.0	0.0	-2.34	0.86	0.77	—	4.1	0.006	0.74	0.0	0.04	32.06	0.00	2.069	17.83	0.00	6.1	93.9	0.0	1.96	0.72	0.87	0.83	—	8209	853	11	234	0	0	0	logfile
✔	7K10	22619	2025-02-14	2020-09-06	3.3	3.44	—	3.4	0.006	0.98	0.0	0.05	15.43	0.01	2.300	4.19	0.37	10.6	89.3	0.1	-5.28	0.72	0.77	2.12	3.4	0.004	0.72	0.0	0.04	16.72	0.00	2.539	5.94	2.29	10.0	89.9	0.1	-1.95	0.40	0.72	0.79	1.71	10037	1259	1	0	0	0	0	logfile
✔	7PD4	13330	2025-02-11	2021-08-04	4.9	4.13	—	7.8	0.005	0.87	0.0	0.05	14.59	0.00	2.035	38.59	0.00	11.7	88.3	0.0	-4.80	0.73	0.72	—	7.8	0.006	0.94	0.0	0.05	13.51	0.01	2.321	27.07	0.00	6.5	93.5	0.0	-1.67	1.27	0.74	0.74	—	6676	842	1	0	0	0	0	logfile
✔	6UUS	20901	2025-02-13	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.50	3.27	2.8	97.2	0.0	-2.25	0.57	0.73	3.22	2.2	0.004	0.63	0.0	0.04	17.86	0.00	2.518	9.25	2.76	3.6	96.4	0.0	0.49	0.98	0.63	0.78	3.57	9308	1190	7	0	0	0	0	logfile
✔	8E3Y	27873	2025-02-13	2022-08-17	2.3	2.68	2.31	2.6	0.003	0.60	0.0	0.05	12.65	0.00	2.237	5.72	0.11	2.0	98.0	0.0	1.26	0.72	0.85	4.19	2.6	0.003	0.55	0.0	0.04	15.64	0.00	2.471	5.55	0.53	1.9	98.1	0.0	1.71	0.79	0.75	0.89	4.25	8966	1139	8	0	0	14	0	logfile
✔	6XJB	22205	2025-02-14	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.11	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.003	0.63	0.0	0.04	15.50	0.00	2.502	10.56	3.25	7.5	92.5	0.0	-1.55	1.82	0.88	0.85	1.91	10070	1277	1	0	0	0	0	logfile
✔	6P6i	20262	2025-02-13	2019-06-04	3.67	3.96	—	3.9	0.007	1.15	1.0	0.06	16.15	0.01	2.248	7.72	0.67	8.7	91.2	0.1	-5.14	0.60	0.73	1.36	3.9	0.004	0.85	0.0	0.05	17.70	0.00	2.418	13.74	3.33	8.1	91.9	0.0	-0.76	0.68	0.63	0.74	0.74	8726	1133	2	0	0	0	0	logfile
✔	7AKV	11814	2025-02-11	2020-10-02	3.6	3.04	3.41	3.7	0.004	0.65	0.0	0.04	14.25	0.00	2.005	76.42	0.16	17.7	82.2	0.1	-4.19	0.81	0.82	2.44	3.7	0.002	0.54	0.0	0.04	16.16	0.00	2.271	64.14	2.64	12.0	87.9	0.1	-3.13	0.86	0.81	0.82	1.78	6201	799	2	0	0	0	245	logfile
✔	7WED	32447	2025-02-11	2021-12-23	3.5	3.62	—	3.7	0.003	0.70	0.0	0.05	13.75	0.01	2.285	7.13	0.00	8.2	91.8	0.0	-1.64	0.57	0.77	2.25	3.6	0.003	0.68	0.0	0.04	16.67	0.01	2.550	6.38	3.81	6.8	93.2	0.0	-1.15	1.14	0.57	0.78	2.15	3358	431	3	0	0	0	0	logfile

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