Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6i52	4410	2025-02-11	2018-11-12	4.7	4.78	—	8.9	0.002	0.57	0.0	0.04	16.56	0.00	2.303	10.11	5.70	11.6	87.5	0.9	-4.07	0.73	0.54	—	8.8	0.004	0.87	0.0	0.05	18.06	0.01	2.400	19.16	0.00	10.4	88.9	0.7	-3.02	3.56	0.76	0.63	—	3856	432	4	20	0	0	0	logfile
✔	7RZT	24777	2025-02-10	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.004	0.36	0.0	0.03	15.45	0.00	2.447	4.84	0.00	0.3	99.7	0.0	5.95	0.25	0.80	0.83	2.98	2451	324	6	0	0	0	0	logfile
✔	7F8V	31493	2025-02-11	2021-07-02	3.3	2.62	—	3.3	0.005	0.87	0.0	0.05	14.10	0.01	2.253	7.23	0.00	4.1	95.9	0.0	-1.49	0.53	0.65	1.98	3.3	0.003	0.62	0.0	0.04	16.21	0.00	2.506	11.57	2.81	4.2	95.8	0.0	-0.66	0.41	0.53	0.68	1.37	6601	848	5	0	0	0	0	logfile
✔	5LY6	4118	2025-02-11	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.83	0.0	0.04	14.06	0.01	2.517	13.25	0.00	10.2	89.6	0.2	-2.86	3.31	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	6LBH	0869	2025-02-13	2019-11-14	3.7	3.79	—	3.8	0.006	0.82	0.0	0.05	13.62	0.00	2.079	18.56	0.20	7.7	92.2	0.2	-2.87	0.75	0.83	2.95	3.8	0.003	0.70	0.0	0.04	15.43	0.00	2.489	11.70	3.28	5.6	94.4	0.0	-1.01	0.53	0.73	0.81	1.74	9219	1236	6	0	0	0	0	logfile
✔	7ZLG	14779	2025-02-14	2022-04-15	2.72	2.42	2.69	2.6	0.004	0.71	0.0	0.05	13.43	0.00	2.187	7.18	0.66	4.4	95.2	0.4	0.03	0.69	0.83	2.76	2.5	0.003	0.62	0.0	0.04	15.18	0.00	2.459	6.03	1.23	5.9	93.9	0.2	0.40	0.75	0.68	0.85	2.93	9618	1226	7	0	0	10	0	logfile
✔	7RZS	24776	2025-02-10	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.004	0.46	0.0	0.04	16.05	0.00	2.487	4.26	0.35	0.0	100.0	0.0	5.18	1.19	0.79	0.82	1.13	2445	324	6	0	0	0	0	logfile
✔	7WTG	32785	2025-02-10	2022-02-04	3.8	3.93	—	3.9	0.006	1.20	0.0	0.07	14.44	0.01	2.297	4.61	0.00	9.1	90.9	0.0	-2.94	0.67	0.73	2.60	3.9	0.005	0.83	0.0	0.05	16.41	0.01	2.534	12.45	3.33	10.7	89.0	0.2	-2.59	1.22	0.70	0.76	1.92	3318	425	3	0	0	0	0	logfile
✔	8E3Z	27874	2025-02-13	2022-08-17	2.7	3.04	2.73	3.0	0.003	0.59	0.0	0.04	12.80	0.00	2.219	7.18	0.11	2.2	97.8	0.0	0.87	0.68	0.77	2.49	3.0	0.003	0.55	0.0	0.04	16.40	0.00	2.435	5.25	2.03	2.6	97.4	0.0	1.16	0.59	0.73	0.84	2.74	8898	1132	8	0	0	5	0	logfile
✔	7CZB	30508	2025-02-11	2020-09-07	3.8	4.14	—	4.1	0.005	1.12	0.0	0.06	15.72	0.01	2.360	4.78	0.47	12.5	87.5	0.0	-4.95	0.56	0.80	2.30	4.1	0.003	0.84	0.0	0.04	17.55	0.00	2.537	8.84	3.93	11.2	88.8	0.0	-1.32	1.38	0.57	0.80	1.92	6304	776	4	0	0	0	0	logfile
✔	6SGY	10188	2025-02-11	2019-08-05	4.6	4.79	—	4.6	0.007	1.35	0.0	0.06	15.71	0.01	2.225	11.45	0.67	12.8	87.2	0.0	-4.34	0.72	0.63	—	6.5	0.003	0.89	0.0	0.05	13.24	0.01	2.033	10.83	0.00	8.5	91.5	0.0	-2.17	3.43	0.78	0.76	—	5766	804	2	0	0	0	0	logfile
✔	7X26	32959	2025-02-11	2022-02-25	3.685	3.39	—	3.9	0.011	1.46	1.0	0.09	14.53	0.01	2.186	10.90	9.27	16.2	81.1	2.7	-3.21	0.68	0.74	2.38	3.9	0.004	0.81	0.0	0.05	16.05	0.00	2.434	10.27	3.82	10.7	88.8	0.5	-2.30	1.68	0.71	0.76	2.07	4828	641	3	0	0	0	0	logfile
✔	6V6C	21068	2025-02-11	2019-12-04	4.5	4.50	—	4.4	0.003	0.55	0.0	0.04	13.78	0.00	2.226	7.10	0.00	5.1	94.9	0.0	-4.56	0.42	0.82	—	4.5	0.003	0.67	0.0	0.04	14.58	0.00	2.625	4.61	0.00	4.2	95.8	0.0	-0.05	2.01	0.42	0.81	—	4007	497	1	0	0	0	0	logfile
✔	6YKM	10828	2025-02-14	2020-04-06	3.1	3.19	2.97	3.2	0.009	1.07	0.0	0.06	11.10	0.01	2.256	4.12	0.00	3.0	97.0	0.0	-4.68	0.68	0.86	4.14	3.2	0.003	0.59	0.0	0.04	14.85	0.00	2.609	8.05	1.81	2.4	97.6	0.0	0.91	1.07	0.68	0.88	2.49	10434	1357	10	0	0	8	0	logfile
✔	7RZQ	24774	2025-02-10	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.004	0.35	0.0	0.03	14.97	0.00	2.615	4.49	1.07	0.0	100.0	0.0	5.42	0.29	0.82	0.83	1.87	2421	322	6	0	0	0	0	logfile
✔	7PDD	13334	2025-02-11	2021-08-05	4.2	4.47	—	4.3	0.004	0.75	0.0	0.04	14.38	0.00	2.092	20.92	0.00	7.1	92.9	0.0	-4.11	0.79	0.75	—	4.3	0.004	0.81	0.0	0.05	13.69	0.00	2.317	17.45	0.00	5.8	94.2	0.0	-1.33	1.23	0.79	0.73	—	4516	577	2	0	0	0	0	logfile
✔	7ZH0	14716	2025-02-11	2022-04-05	3.2	3.63	3.07	3.5	0.004	0.72	0.0	0.04	13.97	0.01	2.191	14.27	0.24	6.0	94.0	0.0	1.08	0.65	0.75	3.58	3.5	0.003	0.64	0.0	0.04	16.49	0.00	2.550	11.85	4.65	5.7	94.3	0.0	1.02	0.49	0.66	0.76	2.67	3869	495	1	0	0	0	0	logfile
✔	7AWA	11928	2025-02-11	2020-11-06	3.5	3.83	—	3.6	0.003	0.64	0.0	0.04	14.22	0.00	2.126	6.77	0.00	5.8	94.2	0.0	-2.52	0.57	0.81	2.14	3.7	0.002	0.52	0.0	0.04	15.19	0.00	2.425	5.08	0.69	4.9	95.1	0.0	-0.65	1.17	0.54	0.80	1.63	5310	328	1	0	0	0	2703	logfile
✔	7R8C	24315	2025-02-12	2021-06-26	3.7	4.19	—	4.1	0.002	0.49	0.0	0.04	12.82	0.00	2.073	6.73	0.21	4.8	95.2	0.0	-1.63	0.68	0.85	1.76	4.1	0.003	0.63	0.0	0.04	15.17	0.00	2.613	7.37	2.04	5.2	94.8	0.0	1.29	0.55	0.71	0.87	2.14	8538	1090	2	0	0	0	0	logfile
✔	6T7C	10393	2025-02-14	2019-10-21	4.0	4.27	3.92	3.8	0.008	0.88	1.0	0.05	26.05	0.01	2.081	7.85	0.00	1.7	98.2	0.1	-2.97	0.84	0.80	—	3.9	0.006	0.80	0.0	0.04	26.29	0.00	2.390	16.05	4.21	2.6	97.4	0.0	1.88	1.36	0.86	0.83	—	10606	917	12	190	0	0	0	logfile

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