Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X3F	22021	2025-02-13	2020-05-21	3.03	3.23	—	3.3	0.006	0.93	0.0	0.06	14.72	0.01	2.351	3.78	0.00	5.0	95.0	0.0	-6.78	0.58	0.85	3.24	3.3	0.003	0.64	0.0	0.04	15.89	0.00	2.532	6.00	1.75	4.1	95.9	0.0	-0.15	0.96	0.54	0.85	2.08	9366	1227	6	0	3	0	0	logfile
✔	6QVC	4647	2025-02-13	2019-03-01	4.0	4.37	3.88	4.1	0.008	1.47	0.0	0.08	11.98	0.01	2.232	8.97	2.19	8.4	91.1	0.5	-3.90	0.67	0.81	—	4.1	0.004	1.07	0.0	0.05	14.16	0.00	2.502	16.41	2.98	6.1	93.9	0.0	0.40	1.37	0.68	0.81	—	9272	1198	2	0	0	0	0	logfile
✔	7SDE	23517	2025-02-11	2021-09-29	3.2	3.37	—	3.3	0.004	0.92	1.0	0.06	17.03	0.00	2.201	25.84	8.60	10.6	89.1	0.3	-4.65	0.74	0.77	2.50	3.3	0.002	0.67	0.0	0.04	17.28	0.00	2.190	7.50	3.31	6.1	93.9	0.0	-0.22	1.20	0.74	0.79	2.26	5734	726	2	0	0	0	0	logfile
✔	7V9X	31829	2025-02-14	2021-08-27	2.82	3.18	—	3.1	0.005	0.63	0.0	0.04	24.07	0.00	2.241	6.09	0.00	4.0	96.0	0.0	0.17	0.75	0.85	3.29	3.1	0.004	0.62	0.0	0.04	24.34	0.00	2.521	5.20	1.47	3.6	96.4	0.0	0.50	0.88	0.73	0.85	2.69	10550	760	9	210	0	0	0	logfile
✔	7RD6	24413	2025-02-12	2021-07-09	3.25	3.44	—	3.4	0.004	0.79	0.0	0.05	14.65	0.00	2.183	9.73	0.00	5.3	94.7	0.0	-1.73	0.56	0.70	2.23	3.4	0.005	0.78	0.0	0.05	16.41	0.00	2.403	13.08	2.17	6.7	93.3	0.0	-1.41	0.92	0.58	0.74	2.25	7396	929	2	0	2	0	0	logfile
✔	8EFP	28087	2025-02-11	2022-09-08	3.8	4.73	3.90	4.0	0.006	1.46	7.0	0.09	18.61	0.01	1.908	33.65	3.07	13.3	86.7	0.0	-4.26	0.82	0.62	-0.42	4.0	0.003	0.89	0.0	0.04	19.06	0.00	2.492	16.83	2.49	9.2	90.8	0.0	-2.27	0.85	0.84	0.71	-0.08	4705	594	2	0	0	0	0	logfile
✔	7WCM	32424	2025-02-12	2021-12-20	2.33	2.14	—	2.2	0.003	0.61	0.0	0.04	14.07	0.00	2.281	3.66	0.00	2.5	97.5	0.0	1.05	0.64	0.84	4.03	2.2	0.003	0.63	0.0	0.04	16.15	0.00	2.548	2.75	1.69	2.6	97.4	0.0	1.50	0.32	0.63	0.87	4.16	8232	1047	6	0	1	0	0	logfile
✔	6XDG	22137	2025-02-13	2020-06-10	3.9	4.70	—	4.4	0.004	0.70	0.0	0.05	13.90	0.00	2.127	19.43	0.00	9.8	89.8	0.4	-3.87	0.86	0.76	1.61	4.4	0.003	0.77	0.0	0.05	14.68	0.00	2.367	13.03	2.36	7.7	92.1	0.2	-1.68	0.60	0.86	0.77	1.23	8004	1043	6	0	4	0	0	logfile
✔	7MSX	23971	2025-02-11	2021-05-12	3.15	3.24	3.04	3.2	0.008	0.62	0.0	0.05	10.30	0.00	2.385	0.81	0.00	1.9	98.1	0.0	0.06	0.77	0.85	3.76	3.2	0.003	0.57	0.0	0.04	15.32	0.00	2.495	3.53	1.97	1.5	98.5	0.0	1.00	1.12	0.78	0.88	3.24	3706	473	2	0	3	0	0	logfile
✔	8FMZ	29301	2025-02-13	2022-12-26	2.59	2.79	2.62	2.9	0.004	0.57	0.0	0.04	8.86	0.00	2.264	6.51	0.21	1.7	98.3	0.0	1.58	0.57	0.77	3.79	2.8	0.002	0.53	0.0	0.04	14.25	0.00	2.602	3.86	2.02	2.1	97.9	0.0	1.83	1.07	0.66	0.86	3.58	8768	1126	6	0	0	0	0	logfile
✔	8CX0	27032	2025-02-12	2022-05-19	2.7	3.46	2.59	3.0	0.006	0.70	0.0	0.05	14.18	0.00	2.270	2.23	0.00	3.0	97.0	0.0	0.97	0.87	0.84	3.62	3.0	0.003	0.71	0.0	0.04	16.03	0.00	2.417	7.69	1.50	2.7	97.3	0.0	1.37	2.48	0.88	0.88	3.13	7575	889	8	8	3	0	0	logfile
✔	7TUZ	26136	2025-02-13	2022-02-03	3.12	3.73	—	3.6	0.011	0.73	0.0	0.07	12.68	0.01	2.161	6.74	0.10	3.5	96.5	0.0	-2.23	0.73	0.86	3.03	3.6	0.003	0.58	0.0	0.04	14.87	0.00	2.523	6.74	2.80	3.3	96.7	0.0	0.46	0.58	0.69	0.82	2.61	8910	1141	6	0	1	0	0	logfile
✔	7W88	32353	2025-02-12	2021-12-07	3.5	3.65	—	3.6	0.003	0.71	0.0	0.04	16.87	0.00	2.225	15.29	8.23	15.2	84.8	0.0	-5.15	0.70	0.69	1.82	3.6	0.003	0.73	0.0	0.04	17.58	0.01	2.446	11.71	6.68	15.1	84.9	0.0	-2.98	0.51	0.69	0.69	1.67	7138	896	1	0	0	0	0	logfile
✔	6X3E	22020	2025-02-13	2020-05-21	3.42	3.51	—	3.5	0.006	0.90	0.0	0.06	14.42	0.01	2.083	3.23	0.00	2.9	97.1	0.0	-6.06	0.60	0.87	2.34	3.5	0.003	0.69	0.0	0.04	16.17	0.00	2.204	7.23	2.88	2.3	97.7	0.0	0.81	0.64	0.61	0.89	1.53	9469	1242	5	0	3	0	0	logfile
✔	7U1T	26305	2025-02-12	2022-02-22	3.3	4.15	—	3.3	0.013	1.63	0.0	0.17	24.34	0.00	2.312	57.79	4.77	5.8	93.0	1.2	-1.17	0.76	0.53	0.99	3.4	0.004	0.77	0.0	0.04	25.76	0.01	2.470	11.74	3.30	5.8	93.9	0.3	-0.34	1.88	0.87	0.77	1.19	7574	675	6	118	0	0	0	logfile
✔	6QVB	4646	2025-02-13	2019-03-01	4.34	5.06	4.26	4.4	0.010	1.72	8.0	0.09	12.75	0.01	2.153	12.31	3.10	10.3	89.5	0.2	-4.45	0.67	0.75	—	4.4	0.004	0.93	0.0	0.05	12.48	0.00	2.329	19.13	0.00	9.1	90.9	0.0	-0.52	0.90	0.67	0.75	—	9237	1193	2	0	0	0	0	logfile
✔	6QVU	4657	2025-02-13	2019-03-05	4.2	6.05	4.20	6.9	0.006	1.31	0.0	0.06	12.34	0.01	2.191	10.73	1.99	9.3	90.7	0.0	-4.21	0.65	0.75	—	6.9	0.003	0.86	0.0	0.05	11.37	0.01	2.417	17.58	0.00	7.9	92.1	0.0	-0.56	1.38	0.66	0.77	—	9272	1198	2	0	0	0	0	logfile
✔	6Y97	10733	2025-02-11	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.17	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.003	0.70	0.0	0.04	13.40	0.00	2.562	10.36	0.00	6.5	93.5	0.0	0.73	0.84	0.71	0.71	—	4366	564	4	0	0	0	0	logfile
✔	7WiH	32530	2025-02-14	2022-01-03	3.68	4.13	—	4.1	0.006	1.03	0.0	0.06	14.90	0.01	2.024	5.51	0.73	10.8	88.9	0.3	-6.08	0.77	0.78	2.12	4.1	0.003	0.70	0.0	0.04	14.79	0.00	2.605	4.64	3.05	10.1	89.9	0.0	-3.18	0.48	0.76	0.78	1.77	10002	1482	4	0	4	0	0	logfile
✔	7WDK	32438	2025-02-13	2021-12-21	3.05	3.04	—	3.1	0.004	0.74	0.0	0.05	14.65	0.01	2.201	14.24	0.51	7.8	92.2	0.0	-1.03	0.58	0.65	2.10	3.1	0.004	0.66	0.0	0.04	16.33	0.00	2.483	9.41	2.16	7.2	92.8	0.0	-0.84	0.32	0.59	0.68	1.93	9461	1215	2	0	0	0	0	logfile

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