Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WK1	32555	2025-02-14	2022-01-08	3.25	3.54	—	3.6	0.002	0.44	0.0	0.04	8.42	0.00	2.212	6.55	2.94	5.2	94.7	0.1	-4.01	0.65	0.76	1.98	3.5	0.003	0.62	0.0	0.04	13.44	0.00	2.458	9.82	3.03	5.7	94.2	0.1	0.01	0.78	0.71	0.84	1.40	10200	1330	4	0	2	0	0	logfile
✔	6JMQ	9849	2025-02-14	2019-03-13	3.31	3.52	3.25	3.5	0.005	0.96	0.0	0.05	14.03	0.01	2.293	3.84	0.29	4.3	95.6	0.1	-5.03	0.71	0.79	2.84	3.5	0.003	0.69	0.0	0.04	14.76	0.00	2.495	7.53	3.27	3.8	96.2	0.1	-1.15	0.51	0.75	0.83	2.66	9950	1223	12	0	74	0	0	logfile
✔	7NS4	12560	2025-02-11	2021-03-05	3.9	3.81	3.79	3.8	0.006	0.79	0.0	0.05	14.40	0.00	2.116	9.17	0.00	10.8	89.2	0.0	-1.02	0.75	0.84	2.90	3.8	0.004	0.67	0.0	0.04	16.08	0.00	2.383	7.22	2.55	8.3	91.7	0.0	0.15	0.34	0.74	0.83	2.24	5465	698	4	0	2	0	0	logfile
✔	7U6E	26364	2025-02-12	2022-03-03	3.0	3.18	2.99	3.1	0.008	0.91	0.0	0.06	14.19	0.01	2.171	5.91	1.82	4.6	95.3	0.1	-2.19	0.79	0.74	2.42	3.1	0.003	0.76	0.0	0.05	16.60	0.00	2.415	11.75	2.16	4.1	95.9	0.0	-1.64	1.66	0.81	0.76	2.18	8004	974	9	0	10	0	0	logfile
✔	6M4D	30076	2025-02-14	2020-03-06	4.4	4.58	—	4.3	0.007	0.84	0.0	0.05	31.37	0.01	2.074	25.84	0.71	6.6	92.8	0.6	-2.81	0.88	0.82	—	4.3	0.006	0.74	0.0	0.04	30.54	0.01	2.086	20.77	0.00	2.7	96.7	0.6	0.59	1.42	0.88	0.83	—	10497	682	10	250	0	0	0	logfile
✔	7D10	30542	2025-02-11	2020-09-12	3.52	3.70	—	3.7	0.007	1.05	0.0	0.06	10.87	0.01	2.249	4.93	0.00	8.9	90.6	0.5	-6.70	0.65	0.83	3.73	3.7	0.003	0.64	0.0	0.04	14.08	0.00	2.479	7.21	4.38	7.0	93.0	0.0	-1.59	1.20	0.63	0.83	2.89	6424	892	4	0	4	0	0	logfile
✔	7ZR8	14886	2025-02-11	2022-05-03	3.7	3.81	3.43	3.8	0.003	0.46	0.0	0.04	8.42	0.00	2.181	7.02	0.74	3.9	96.1	0.0	-0.94	0.72	0.82	2.69	3.8	0.004	0.61	0.0	0.04	13.18	0.00	2.338	7.98	3.71	4.5	95.5	0.0	-1.02	0.50	0.72	0.82	2.28	3693	471	4	0	1	0	0	logfile
✔	8CZi	27098	2025-02-10	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.17	0.00	2.440	4.09	1.68	0.0	100.0	0.0	5.65	0.84	0.82	0.84	1.88	2550	339	6	0	0	0	0	logfile
✔	7PAG	13269	2025-02-11	2021-07-29	4.0	4.22	—	4.1	0.005	0.75	0.0	0.05	13.81	0.01	2.177	12.66	0.00	6.3	93.7	0.0	-1.70	0.30	0.60	—	4.2	0.004	1.05	0.0	0.05	16.71	0.00	2.198	16.59	3.65	9.7	90.3	0.0	-3.16	1.29	0.33	0.67	—	4040	509	2	0	4	0	0	logfile
✔	7BW4	30226	2025-02-13	2020-04-13	3.7	3.92	—	3.8	0.004	0.66	1.0	0.05	15.16	0.00	2.078	16.25	1.68	4.3	95.5	0.2	-2.50	0.77	0.77	1.82	3.8	0.004	0.81	0.0	0.05	16.64	0.00	2.359	12.32	3.05	4.2	95.8	0.0	-0.90	1.57	0.78	0.77	1.36	8605	1078	5	0	2	0	0	logfile
✔	6iV6	9742	2025-02-14	2018-12-02	3.6	3.59	—	3.6	0.005	1.04	0.0	0.05	17.65	0.01	2.261	4.91	0.61	6.7	93.3	0.1	-5.17	0.64	0.75	2.10	3.6	0.003	0.69	0.0	0.04	19.03	0.00	2.526	6.79	3.83	7.3	92.7	0.0	-2.32	0.90	0.69	0.78	2.10	10158	1209	2	26	0	0	0	logfile
✔	6Wi9	21683	2025-02-12	2020-04-09	4.3	4.37	4.24	4.3	0.002	0.50	0.0	0.04	12.85	0.00	2.214	5.38	0.00	4.2	95.8	0.0	-3.72	0.77	0.78	—	4.3	0.003	0.70	0.0	0.04	13.85	0.00	2.404	10.27	0.11	5.9	94.1	0.0	-0.79	0.70	0.78	0.78	—	8550	1108	6	0	0	0	0	logfile
✔	7F8W	31494	2025-02-13	2021-07-02	3.1	2.94	—	3.2	0.005	1.04	0.0	0.06	14.09	0.01	2.273	8.70	0.00	4.6	95.4	0.0	-1.99	0.54	0.58	1.20	3.1	0.003	0.73	0.0	0.04	16.36	0.00	2.503	16.21	3.69	4.5	95.5	0.0	-1.06	0.62	0.58	0.65	0.87	8486	1087	6	0	0	0	0	logfile
✔	7N8X	24248	2025-02-11	2021-06-16	3.4	3.65	—	3.6	0.003	0.73	0.0	0.05	13.27	0.01	2.153	9.30	0.00	10.1	89.3	0.6	-1.42	0.64	0.67	2.57	3.6	0.003	0.73	0.0	0.05	16.37	0.01	2.312	8.08	1.86	7.4	92.2	0.4	-1.37	0.47	0.66	0.70	2.13	6617	831	2	0	0	0	0	logfile
✔	7XJA	33223	2025-02-12	2022-04-15	3.5	3.35	3.43	3.4	0.003	0.60	0.0	0.04	13.73	0.00	2.182	9.41	0.00	1.5	98.5	0.0	1.81	0.57	0.72	3.01	3.4	0.003	0.68	0.0	0.04	16.01	0.00	2.518	8.59	2.22	3.1	96.9	0.0	2.39	1.79	0.64	0.81	3.25	7276	944	2	0	0	0	0	logfile
✔	7XUN	33475	2025-02-11	2022-05-19	3.4	3.91	3.41	3.8	0.002	0.57	0.0	0.04	13.72	0.00	2.129	11.02	0.00	4.1	95.9	0.0	-0.92	0.72	0.76	0.33	3.8	0.002	0.66	0.0	0.04	15.86	0.00	2.591	9.01	2.12	4.2	95.8	0.0	-0.22	0.43	0.73	0.77	0.38	5591	741	1	0	0	0	0	logfile
✔	8D9K	27264	2025-02-11	2022-06-10	3.72	4.58	3.85	4.1	0.001	0.37	0.0	0.03	16.35	0.00	2.270	6.46	0.64	1.9	98.1	0.0	1.53	0.89	0.84	2.42	4.1	0.004	0.56	0.0	0.04	17.30	0.00	2.258	10.58	2.35	2.4	97.6	0.0	0.60	0.59	0.90	0.86	2.22	5708	546	3	65	0	0	0	logfile
✔	6N3C	0334	2025-02-11	2018-11-14	3.3	3.53	—	3.5	0.009	1.31	0.0	0.07	14.00	0.00	2.387	18.47	0.00	11.5	88.5	0.0	-5.01	0.52	0.83	4.06	3.5	0.008	0.78	0.0	0.04	15.93	0.00	2.490	12.06	7.37	11.2	88.8	0.0	-3.78	1.15	0.54	0.85	4.20	4260	640	20	0	0	0	0	logfile
✔	7M61	23686	2025-02-10	2021-03-25	3.8	3.83	—	4.1	0.005	1.02	0.0	0.08	12.79	0.00	2.218	22.02	0.00	14.3	85.7	0.0	-4.63	0.49	0.73	2.45	3.9	0.003	0.78	0.0	0.05	14.92	0.00	2.310	18.29	4.10	12.9	87.1	0.0	-4.93	1.31	0.49	0.74	2.46	1690	230	20	0	10	0	0	logfile
✔	7E7Z	31005	2025-02-12	2021-02-28	3.2	3.35	2.96	3.4	0.002	0.51	0.0	0.04	13.40	0.00	2.240	9.87	0.00	5.6	94.4	0.0	-0.12	0.63	0.81	1.86	3.4	0.003	0.56	0.0	0.04	15.42	0.00	2.602	6.45	1.29	6.1	93.9	0.0	1.70	0.42	0.53	0.79	1.65	7808	992	4	0	0	0	0	logfile

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