Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G0B	29652	2025-02-12	2023-01-31	2.8	2.96	2.80	3.0	0.008	0.70	0.0	0.04	15.19	0.00	2.221	7.63	0.14	2.9	97.1	0.0	0.73	0.67	0.83	2.51	3.0	0.004	0.66	0.0	0.04	15.06	0.00	2.575	10.74	1.00	2.6	97.4	0.0	3.28	0.41	0.66	0.85	1.51	7758	1044	19	0	7	0	0	logfile
✔	7NA8	24268	2025-02-13	2021-06-20	2.7	3.19	—	3.1	0.007	0.93	5.0	0.06	15.00	0.00	2.112	7.91	0.31	3.1	96.9	0.0	-1.04	0.78	0.87	4.31	3.1	0.002	0.58	0.0	0.04	15.70	0.00	2.551	6.16	1.04	2.7	97.3	0.0	0.59	0.37	0.72	0.86	3.70	8888	1124	6	0	2	0	0	logfile
✔	7LB8	23251	2025-02-14	2021-01-07	3.4	3.48	—	3.5	0.002	0.62	1.0	0.04	14.95	0.00	2.093	9.76	2.66	4.7	95.0	0.3	-1.98	0.58	0.72	1.54	3.5	0.003	0.72	0.0	0.04	16.46	0.00	2.562	9.76	3.32	4.2	95.6	0.1	0.09	0.95	0.66	0.78	1.85	10439	1405	4	0	0	0	0	logfile
✔	7S05	24784	2025-02-12	2021-08-30	3.1	3.37	3.11	3.4	0.004	0.68	0.0	0.05	16.05	0.00	2.212	8.45	0.00	5.8	94.2	0.0	0.10	0.68	0.81	2.22	3.4	0.004	0.62	0.0	0.05	15.83	0.00	2.480	6.29	1.70	6.1	93.9	0.0	1.12	0.47	0.69	0.85	2.63	7504	874	8	0	16	0	0	logfile
✔	7W7E	32342	2025-02-13	2021-12-04	3.4	3.51	—	3.9	0.006	0.67	2.0	0.05	13.83	0.00	2.120	8.28	0.32	8.8	91.2	0.0	-1.54	0.68	0.82	2.16	3.9	0.003	0.67	0.0	0.04	16.63	0.00	2.123	6.68	3.46	6.6	93.4	0.0	-0.75	0.47	0.68	0.83	1.97	8524	1090	6	0	1	0	0	logfile
✔	7WZ4	32904	2025-02-12	2022-02-17	3.0	3.46	—	3.4	0.003	0.59	0.0	0.04	12.94	0.00	2.096	3.26	0.12	2.7	97.3	0.0	1.09	0.65	0.85	3.69	3.4	0.002	0.52	0.0	0.04	15.89	0.00	2.569	3.20	2.77	2.1	97.9	0.0	1.51	0.39	0.62	0.84	2.99	8187	1075	5	0	0	0	0	logfile
✔	7KCL	22812	2025-02-14	2020-10-06	3.14	3.19	—	3.2	0.004	0.62	0.0	0.04	15.77	0.00	2.009	10.47	0.00	4.7	95.3	0.0	-0.08	0.76	0.84	2.81	3.2	0.003	0.61	0.0	0.04	17.15	0.00	1.962	9.88	2.11	4.5	95.5	0.0	0.27	0.89	0.76	0.87	2.64	10057	1249	5	0	6	0	0	logfile
✔	7KCK	22811	2025-02-14	2020-10-06	3.26	3.24	3.26	3.2	0.004	0.66	0.0	0.04	15.21	0.00	2.008	8.58	0.09	4.0	96.0	0.0	-0.31	0.77	0.83	2.85	3.2	0.003	0.62	0.0	0.04	17.05	0.00	1.930	8.99	1.88	4.6	95.4	0.0	-0.08	0.92	0.78	0.86	2.84	9825	1220	4	0	6	0	0	logfile
✔	7VGY	31980	2025-02-14	2021-09-20	3.1	3.36	—	3.2	0.005	0.66	0.0	0.05	14.18	0.00	2.194	10.78	0.43	6.7	93.3	0.0	-0.74	0.73	0.81	2.58	3.2	0.003	0.60	0.0	0.04	16.05	0.00	2.502	7.20	3.85	5.4	94.6	0.0	-0.20	0.91	0.73	0.84	2.43	8748	1121	6	0	2	0	0	logfile
✔	8EK1	28192	2025-02-15	2022-09-19	3.6	3.91	3.66	3.8	0.004	0.74	0.0	0.05	15.72	0.00	2.185	9.39	0.53	9.2	90.3	0.5	-1.95	0.80	0.83	2.83	3.8	0.004	0.72	0.0	0.04	16.57	0.00	2.432	6.70	3.90	10.7	89.3	0.0	-1.96	1.00	0.80	0.84	2.80	8497	1102	7	0	0	0	0	logfile
✔	7P9U	13266	2025-02-11	2021-07-28	3.7	3.88	3.67	3.8	0.003	0.68	0.0	0.04	14.10	0.00	2.188	11.55	0.00	6.8	92.8	0.4	1.01	0.51	0.75	1.02	3.8	0.003	0.75	0.0	0.04	16.24	0.00	2.515	10.31	2.57	6.6	93.2	0.2	0.62	0.39	0.52	0.75	1.11	3943	503	2	0	0	0	0	logfile
✔	6XG6	22174	2025-02-14	2020-06-17	3.2	2.96	3.20	3.0	0.003	0.55	0.0	0.04	15.41	0.00	2.048	8.79	0.00	3.6	96.4	0.0	0.46	0.71	0.77	2.28	3.0	0.003	0.63	0.0	0.04	17.43	0.00	1.962	10.87	2.54	4.1	95.9	0.0	0.29	0.99	0.74	0.83	2.31	9825	1220	4	0	8	0	0	logfile
✔	7W6P	32331	2025-02-12	2021-12-02	3.47	3.79	—	9.6	0.004	0.69	0.0	0.04	13.68	0.00	2.196	14.60	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	8.7	0.003	0.73	0.0	0.04	15.73	0.00	2.510	14.78	2.55	6.0	94.0	0.0	-0.82	1.94	0.32	0.26	0.39	8408	1083	6	0	1	0	0	logfile
✔	8EKA	28196	2025-02-12	2022-09-20	3.7	4.02	3.72	3.9	0.003	0.68	0.0	0.04	17.36	0.00	2.209	7.61	0.26	12.3	87.4	0.3	-1.98	0.78	0.85	2.25	3.9	0.003	0.68	0.0	0.04	17.57	0.00	2.493	6.74	3.22	12.0	87.7	0.2	-1.95	0.36	0.78	0.85	2.44	7023	905	7	0	0	0	0	logfile
✔	7WHM	32504	2025-02-14	2021-12-31	2.7	2.86	—	2.8	0.006	0.64	0.0	0.05	13.85	0.00	2.155	6.30	0.00	3.1	96.9	0.0	0.15	0.43	0.87	4.68	2.8	0.002	0.49	0.0	0.04	16.06	0.00	2.570	4.53	1.49	2.0	98.0	0.0	1.44	1.11	0.41	0.85	3.39	9650	1214	1	0	0	0	0	logfile
✔	8CTi	26991	2025-02-11	2022-05-14	3.6	3.83	3.60	3.7	0.011	0.79	0.0	0.04	20.28	0.00	2.164	11.82	0.49	3.1	96.9	0.0	-1.49	0.67	0.63	1.75	3.8	0.005	0.70	0.0	0.04	20.33	0.01	2.336	15.39	4.38	6.3	93.7	0.0	-0.69	1.99	0.70	0.66	1.57	5297	473	3	71	0	0	0	logfile
✔	6UY0	20945	2025-02-14	2019-11-09	3.23	3.39	—	3.4	0.014	1.85	0.0	0.08	13.73	0.00	1.861	1.22	0.00	4.3	95.7	0.0	-2.56	0.47	0.67	1.98	3.4	0.003	0.54	0.0	0.04	15.42	0.00	2.048	4.75	1.42	2.1	97.9	0.0	2.01	1.14	0.64	0.82	1.40	9684	1210	2	0	7	0	0	logfile
✔	8F4B	28854	2025-02-14	2022-11-10	3.27	3.47	3.40	3.5	0.014	1.82	0.0	0.09	12.70	0.00	2.278	1.25	0.10	5.0	95.0	0.0	-2.97	0.50	0.68	1.95	3.5	0.002	0.57	0.0	0.04	15.49	0.00	2.514	4.70	1.24	2.5	97.5	0.0	2.02	0.68	0.65	0.81	1.52	9487	1198	3	0	2	0	0	logfile
✔	7LA4	23245	2025-02-12	2021-01-05	3.3	3.51	—	3.5	0.006	0.84	1.0	0.06	16.13	0.00	2.100	16.95	1.91	9.6	89.9	0.5	-4.02	0.75	0.82	3.50	3.5	0.003	0.71	0.0	0.05	16.56	0.00	2.147	11.36	2.81	8.7	91.3	0.0	-2.83	1.11	0.72	0.82	2.71	8281	1052	10	0	17	4	0	logfile
✔	7ZH4	14721	2025-02-10	2022-04-05	2.49	2.65	2.46	2.6	0.005	0.63	0.0	0.04	13.90	0.00	2.231	4.63	0.00	2.3	97.7	0.0	-0.97	0.56	0.86	4.93	2.6	0.004	0.56	0.0	0.04	16.57	0.00	2.524	4.63	2.71	1.7	98.3	0.0	1.19	1.10	0.53	0.85	3.67	2957	362	5	0	2	39	0	logfile

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