Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GZ9	34393	2025-02-10	2022-09-26	2.62	2.44	2.40	2.4	0.003	0.69	0.0	0.06	14.01	0.00	2.670	1.93	0.00	0.3	99.7	0.0	-0.15	0.28	0.90	7.26	2.4	0.001	0.52	0.0	0.06	13.89	0.00	2.680	1.74	0.44	0.9	99.1	0.0	0.42	0.26	0.28	0.90	7.78	2426	390	58	0	0	24	0	logfile
✔	8W35	43762	2025-02-10	2024-02-21	2.61	2.59	2.60	2.7	0.005	0.91	0.0	0.04	19.54	0.01	2.350	0.62	1.00	1.3	98.7	0.0	-1.65	0.47	0.62	3.21	2.7	0.002	0.47	0.0	0.03	20.23	0.00	2.570	2.90	1.00	2.2	97.8	0.0	1.54	0.39	0.64	0.75	2.79	2611	234	3	34	0	0	0	logfile
✔	8VYG	43660	2025-02-10	2024-02-08	3.1	3.18	3.20	3.3	0.010	1.22	0.0	0.07	10.29	0.00	2.515	0.48	0.30	2.9	97.1	0.0	0.68	0.51	0.68	2.78	3.2	0.002	0.62	0.0	0.04	15.40	0.00	2.574	5.77	2.39	3.2	96.8	0.0	0.39	1.46	0.54	0.77	2.50	3204	416	4	0	1	0	0	logfile
✔	8QTD	18649	2025-02-10	2023-10-12	3.6	3.77	3.60	3.8	0.002	0.49	0.0	0.04	9.32	0.00	2.298	6.23	2.63	4.5	95.5	0.0	0.45	0.56	0.79	3.01	3.8	0.002	0.57	0.0	0.04	13.75	0.00	2.481	6.87	2.34	4.5	95.5	0.0	0.15	0.52	0.55	0.79	2.96	3219	413	3	0	0	0	0	logfile
✔	9iWQ	60959	2025-02-11	2024-07-25	2.08	2.25	2.08	2.2	0.022	2.14	21.0	0.22	12.56	0.01	2.493	0.18	0.00	1.0	99.0	0.0	1.04	0.22	0.91	6.38	2.2	0.002	0.44	0.0	0.04	13.91	0.00	2.565	0.70	0.97	0.3	99.7	0.0	3.35	0.97	0.21	0.91	5.15	5683	387	1	0	0	0	2830	logfile
✔	8K1M	36795	2025-02-12	2023-07-11	2.9	3.42	2.91	3.3	0.007	1.08	3.0	0.06	14.61	0.01	2.303	4.19	0.42	8.3	91.7	0.0	-1.85	0.62	0.86	3.57	3.3	0.002	0.56	0.0	0.04	15.86	0.00	2.463	4.12	2.09	5.6	94.4	0.0	-0.42	0.47	0.54	0.82	2.82	7148	951	4	0	2	0	0	logfile
✔	8ZNE	60269	2025-02-10	2024-05-26	2.64	2.76	2.44	2.7	0.005	0.78	0.0	0.05	16.82	0.01	2.472	6.22	2.65	3.1	96.9	0.0	0.47	0.53	0.87	4.39	2.7	0.002	0.53	0.0	0.04	17.95	0.00	2.487	5.16	1.76	3.4	96.6	0.0	1.20	1.31	0.49	0.90	4.26	3312	417	2	0	1	9	0	logfile
✔	8Y5Z	38960	2025-02-12	2024-02-01	3.35	3.68	3.41	3.7	0.003	0.61	0.0	0.04	13.09	0.01	2.201	8.65	0.00	4.7	95.3	0.0	1.63	0.65	0.84	2.63	3.7	0.002	0.57	0.0	0.04	15.38	0.01	2.282	6.66	1.62	4.8	95.2	0.0	1.85	0.92	0.65	0.85	1.98	7918	1016	4	0	4	0	0	logfile
✔	8ZND	60268	2025-02-11	2024-05-26	2.53	2.67	1.34	2.6	0.007	0.93	0.0	0.05	15.60	0.01	2.392	3.48	0.88	1.7	98.3	0.0	0.95	0.58	0.90	4.78	2.6	0.002	0.50	0.0	0.04	16.84	0.00	2.439	3.79	0.88	1.7	98.3	0.0	1.50	0.83	0.53	0.92	4.22	3334	416	2	0	1	24	0	logfile
✔	8WCS	37448	2025-02-14	2023-09-13	3.1	3.46	3.33	3.5	0.004	0.77	0.0	0.05	21.59	0.01	2.148	4.70	0.74	8.6	91.4	0.0	-2.55	0.70	0.76	1.66	3.5	0.002	0.58	0.0	0.04	21.21	0.00	2.218	6.39	2.74	8.9	91.1	0.0	-0.16	0.33	0.67	0.77	1.47	10096	1044	3	66	1	0	0	logfile
✔	9JA6	61291	2025-02-11	2024-08-24	4.4	3.40	4.33	5.3	0.008	0.94	0.0	0.04	16.51	0.00	2.211	19.59	9.56	2.8	97.2	0.0	-1.98	0.69	0.60	—	5.3	0.002	0.61	0.0	0.04	12.99	0.00	2.394	7.46	0.00	0.7	99.3	0.0	3.13	1.55	0.71	0.76	—	4880	588	4	0	0	0	0	logfile
✔	9DTT	47165	2025-02-12	2024-10-01	3.6	3.95	3.74	3.7	0.002	0.49	0.0	0.04	18.76	0.00	2.136	10.36	0.00	4.8	95.2	0.0	-0.66	0.53	0.40	0.55	3.8	0.002	0.64	0.0	0.04	20.55	0.00	2.375	12.45	2.17	5.8	94.1	0.1	-1.32	1.02	0.55	0.42	0.68	8274	850	3	67	2	0	0	logfile
✔	8YRG	39542	2025-02-12	2024-03-21	3.14	2.21	3.09	2.0	0.007	0.69	0.0	0.05	12.79	0.00	2.093	9.25	0.00	7.4	92.6	0.0	-0.87	0.74	0.75	3.71	1.9	0.002	0.59	0.0	0.04	14.86	0.00	2.544	6.14	2.17	3.5	96.5	0.0	0.81	0.94	0.74	0.76	2.70	7977	1079	6	0	1	0	0	logfile
✔	9B5A	44205	2025-02-11	2024-03-22	3.65	4.13	3.65	4.0	0.003	0.47	0.0	0.04	10.28	0.00	1.776	4.75	1.66	4.7	95.3	0.0	1.20	0.80	0.74	1.79	4.0	0.002	0.52	0.0	0.04	13.10	0.00	2.614	7.44	0.92	3.0	97.0	0.0	1.29	1.68	0.84	0.80	1.51	4871	599	4	0	1	0	0	logfile
✔	9B8X	44361	2025-02-12	2024-04-01	3.0	3.73	2.92	3.4	0.002	0.42	0.0	0.03	9.22	0.00	2.325	4.87	0.40	2.8	97.2	0.0	2.41	0.60	0.86	2.62	3.4	0.002	0.49	0.0	0.04	12.43	0.00	2.355	3.94	0.54	2.8	97.2	0.0	2.47	0.98	0.61	0.88	2.70	7564	993	2	0	2	0	0	logfile
✔	8oT9	17173	2025-02-11	2023-04-20	3.4	3.23	3.29	3.4	0.009	1.75	0.0	0.10	15.35	0.01	2.415	3.56	6.82	4.1	95.9	0.0	-5.00	0.43	0.90	6.48	3.3	0.002	0.67	0.0	0.05	15.74	0.00	2.611	4.27	1.01	0.9	99.1	0.0	-2.27	1.01	0.39	0.88	5.30	3444	450	6	0	0	0	0	logfile
✔	9F6J	50226	2025-02-14	2024-05-01	3.9	4.11	3.87	4.0	0.003	0.64	0.0	0.04	16.08	0.01	2.253	1.83	0.00	1.1	98.9	0.0	-1.09	0.75	0.79	1.83	4.0	0.002	0.59	0.0	0.04	17.58	0.00	2.527	4.44	2.02	1.6	98.4	0.0	1.03	0.82	0.76	0.80	1.67	9751	1118	4	32	1	0	0	logfile
✔	9AYB	43984	2025-02-11	2024-03-07	3.19	3.65	3.20	3.6	0.003	0.52	0.0	0.04	12.73	0.00	2.313	2.08	0.57	0.9	99.1	0.0	1.23	0.44	0.79	2.78	3.6	0.002	0.51	0.0	0.04	14.11	0.00	2.617	3.42	1.70	1.4	98.6	0.0	1.88	0.32	0.43	0.78	2.01	3347	428	1	0	0	0	0	logfile
✔	8JEY	36203	2025-02-10	2023-05-16	2.6	2.46	2.42	2.7	0.004	0.75	0.0	0.06	11.67	0.00	2.339	4.75	0.00	4.3	95.7	0.0	-4.60	0.41	0.80	6.81	2.8	0.002	0.60	0.0	0.05	16.57	0.00	2.652	2.37	2.56	6.2	93.8	0.0	-3.47	0.44	0.43	0.83	6.51	3060	432	6	0	0	0	0	logfile
✔	9B5K	44215	2025-02-14	2024-03-22	3.16	3.77	3.31	3.6	0.003	0.45	0.0	0.04	9.40	0.00	2.039	1.58	1.33	2.1	97.9	0.0	1.73	0.77	0.81	2.78	3.6	0.002	0.51	0.0	0.04	13.14	0.00	2.076	4.26	2.04	2.0	98.0	0.0	1.65	2.46	0.74	0.78	2.33	10128	1283	6	0	4	0	0	logfile

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