Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7X90	33062	2025-02-11	2022-03-15	4.2	4.77	4.13	4.4	0.003	0.58	0.0	0.04	13.96	0.00	2.191	10.21	0.00	11.8	88.2	0.0	-3.08	0.77	0.73	—	4.4	0.003	0.59	0.0	0.04	13.25	0.00	2.343	8.97	0.00	10.1	89.6	0.2	-2.87	1.19	0.76	0.77	—	6441	420	4	0	2	0	3140	logfile
✔	8AZ6	15755	2025-02-11	2022-09-05	3.1	3.15	3.07	3.1	0.004	0.43	0.0	0.04	9.46	0.00	2.212	5.45	0.00	4.8	95.2	0.0	-4.04	0.50	0.84	6.14	3.1	0.003	0.56	0.0	0.04	13.93	0.00	2.301	2.12	4.21	4.5	95.5	0.0	-4.92	0.73	0.51	0.87	6.03	3420	460	40	0	20	0	0	logfile
✔	7QEW	13943	2025-02-14	2021-12-03	2.1	2.62	—	2.2	0.005	0.86	0.0	0.03	11.15	0.00	2.191	3.73	2.18	3.3	96.7	0.0	1.32	0.78	0.89	4.62	2.3	0.003	0.66	0.0	0.04	14.43	0.00	2.565	5.15	2.28	2.7	97.3	0.0	3.06	1.34	0.79	0.92	3.36	9702	1128	18	0	30	234	0	logfile
✔	6T6V	10387	2025-02-11	2019-10-19	4.5	4.58	—	4.5	0.009	1.34	1.0	0.08	15.46	0.01	1.944	15.31	0.00	6.4	93.6	0.0	-4.09	0.63	0.78	—	4.5	0.005	0.89	0.0	0.05	14.32	0.01	2.203	15.65	0.00	5.8	94.2	0.0	-0.27	1.25	0.63	0.79	—	5868	742	2	0	3	0	0	logfile
✔	7QiA	13985	2025-02-11	2021-12-14	3.5	3.73	3.29	3.6	0.003	0.60	0.0	0.04	12.91	0.00	2.259	11.63	0.00	7.9	92.1	0.0	-1.03	0.65	0.80	1.56	3.7	0.003	0.59	0.0	0.04	14.61	0.00	2.581	10.92	1.59	7.1	92.9	0.0	-0.29	1.33	0.62	0.79	1.16	4843	639	4	0	0	3	0	logfile
✔	6S5T	10100	2025-02-12	2019-07-02	4.15	4.28	4.17	4.2	0.007	1.48	3.0	0.09	17.70	0.00	2.450	5.08	3.93	7.1	92.4	0.6	-4.05	0.75	0.84	—	4.2	0.003	0.67	0.0	0.04	15.43	0.00	2.522	7.51	0.14	3.6	96.4	0.0	0.36	1.14	0.74	0.80	—	6958	896	3	0	1	0	0	logfile
✔	7X94	33066	2025-02-11	2022-03-15	4.0	5.15	4.05	4.4	0.003	0.62	0.0	0.05	15.70	0.00	2.194	12.77	0.00	11.0	89.0	0.0	-2.27	0.78	0.65	—	4.5	0.004	0.66	0.0	0.04	14.02	0.00	2.189	14.88	1.64	11.0	89.0	0.0	-2.70	0.89	0.81	0.78	—	6617	434	4	0	3	0	3208	logfile
✔	7X8W	33059	2025-02-11	2022-03-15	3.1	3.76	3.14	3.6	0.004	0.60	0.0	0.05	16.08	0.00	2.257	4.44	0.00	5.8	94.2	0.0	-1.35	0.73	0.85	4.31	3.6	0.002	0.53	0.0	0.04	15.31	0.00	2.404	4.44	0.55	4.0	95.8	0.2	-1.20	0.91	0.70	0.82	4.41	6674	435	5	0	8	0	3214	logfile
✔	7EFC	31083	2025-02-11	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	14.88	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	1.9	0.005	0.82	0.0	0.05	14.74	0.00	2.549	6.44	0.27	4.4	95.6	0.0	-0.14	0.93	0.80	0.85	6.60	4004	480	8	0	4	156	0	logfile
✔	7QiC	13987	2025-02-11	2021-12-14	4.1	4.27	4.00	4.2	0.003	0.65	0.0	0.04	12.83	0.00	2.221	13.06	0.20	7.7	92.3	0.0	-0.78	0.64	0.79	—	4.2	0.003	0.65	0.0	0.04	12.66	0.00	2.501	12.14	0.00	7.6	92.4	0.0	0.10	1.37	0.64	0.79	—	4841	639	4	0	1	0	0	logfile
✔	7X8Z	33061	2025-02-11	2022-03-15	4.1	4.99	4.12	4.4	0.003	0.58	0.0	0.04	13.98	0.00	2.078	11.39	0.00	12.6	87.1	0.2	-2.94	0.80	0.68	—	4.4	0.004	0.63	0.0	0.04	13.55	0.01	2.256	9.85	0.00	12.6	87.4	0.0	-2.47	0.82	0.82	0.79	—	6480	426	4	0	1	0	3147	logfile
✔	7BSU	30167	2025-02-14	2020-03-31	3.2	3.35	—	3.3	0.006	0.61	0.0	0.04	20.44	0.01	1.626	31.07	7.59	7.6	92.4	0.0	-6.52	0.59	0.85	3.64	3.3	0.003	0.67	0.0	0.04	17.96	0.00	2.063	6.86	3.84	3.8	96.2	0.0	-1.08	0.94	0.64	0.88	3.55	9325	1138	4	0	7	0	0	logfile
✔	7X92	33064	2025-02-11	2022-03-15	4.1	5.14	4.05	4.5	0.005	0.74	1.0	0.06	17.17	0.01	2.106	12.50	0.27	14.5	85.5	0.0	-2.53	0.77	0.69	—	4.6	0.003	0.64	0.0	0.05	13.37	0.00	2.400	12.05	0.00	14.8	84.8	0.5	-2.86	1.19	0.77	0.75	—	6529	426	4	0	2	0	3171	logfile
✔	7YiM	33861	2025-02-11	2022-07-17	2.6	2.93	2.77	2.9	0.013	1.14	0.0	0.07	15.89	0.01	2.272	6.72	0.78	4.9	95.1	0.0	-4.17	0.67	0.68	1.25	2.9	0.005	0.70	0.0	0.04	17.83	0.00	2.426	10.84	1.55	3.4	96.6	0.0	0.32	1.23	0.65	0.68	1.21	4657	592	1	0	0	0	0	logfile
✔	7X8Y	33060	2025-02-11	2022-03-15	4.1	5.59	4.09	4.4	0.003	0.53	0.0	0.04	14.08	0.00	1.988	7.11	0.00	9.0	91.0	0.0	-3.09	0.77	0.65	—	4.5	0.003	0.56	0.0	0.04	13.34	0.00	2.199	5.93	0.00	9.7	90.3	0.0	-2.15	0.95	0.80	0.75	—	6731	440	4	0	1	0	3296	logfile
✔	7X96	33068	2025-02-11	2022-03-15	3.4	4.29	3.35	4.0	0.003	0.61	0.0	0.04	15.74	0.00	2.101	5.71	0.00	8.8	91.2	0.0	-1.35	0.74	0.82	3.22	4.0	0.003	0.54	0.0	0.04	14.87	0.00	2.261	5.11	1.91	9.3	90.7	0.0	-0.99	4.18	0.73	0.81	3.40	6586	427	4	0	6	0	3184	logfile
✔	7BSV	30168	2025-02-14	2020-03-31	3.0	3.16	—	3.1	0.005	1.15	0.0	0.05	19.27	0.01	1.809	30.62	6.19	7.6	92.2	0.2	-6.02	0.61	0.86	4.20	3.1	0.003	0.90	0.0	0.04	17.78	0.00	1.349	7.44	2.46	5.3	94.7	0.0	-0.38	0.99	0.63	0.88	3.42	9339	1139	6	0	8	4	0	logfile
✔	7YHo	33832	2025-02-11	2022-07-14	3.3	3.49	3.34	3.3	0.005	0.74	1.0	0.07	23.57	0.00	2.273	11.12	8.78	4.0	96.0	0.0	0.44	0.74	0.72	1.30	3.3	0.004	0.66	0.0	0.04	23.71	0.00	2.534	14.25	3.45	4.9	95.1	0.0	0.09	0.86	0.75	0.75	1.48	3923	361	4	49	1	0	0	logfile
✔	6ZG1	11191	2025-02-14	2020-06-18	3.77	4.58	—	4.3	0.010	1.61	6.0	0.11	18.79	0.01	2.449	4.87	5.94	2.0	97.9	0.1	-1.53	0.76	0.67	0.74	4.3	0.004	0.98	0.0	0.05	18.00	0.00	2.404	16.26	2.83	5.1	94.9	0.0	-0.17	1.62	0.78	0.80	1.18	9931	1175	16	0	28	0	0	logfile
✔	7Wo7	32641	2025-02-11	2022-01-20	3.8	3.99	—	3.9	0.003	0.71	0.0	0.04	11.24	0.00	2.163	6.93	8.82	9.7	90.3	0.0	-4.70	0.72	0.74	1.98	3.9	0.003	0.73	0.0	0.05	15.21	0.01	2.535	11.86	4.23	14.3	85.7	0.0	-3.40	1.79	0.74	0.76	2.02	4870	634	4	0	1	0	0	logfile

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