Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YR7	34048	2025-02-11	2022-08-09	3.8	4.63	4.40	4.6	0.008	1.25	1.0	0.09	25.59	0.01	2.385	7.94	4.74	16.7	83.3	0.0	-5.36	0.64	0.60	0.33	4.6	0.003	0.73	0.0	0.04	25.11	0.00	2.235	11.69	4.01	17.0	83.0	0.0	-3.02	1.70	0.66	0.64	-0.96	5102	330	7	118	0	0	0	logfile
✔	8RK9	19265	2025-02-11	2023-12-23	3.95	3.73	3.78	20.0	0.002	0.67	0.0	0.05	15.38	0.00	2.268	15.65	0.00	12.8	87.2	0.0	-3.79	0.16	0.00	1.69	7.3	0.004	0.87	0.0	0.05	17.19	0.01	2.529	18.85	2.88	11.9	88.1	0.0	-3.53	4.07	0.28	0.11	-0.96	6138	816	6	0	0	0	0	logfile
✔	7X34	32978	2025-02-10	2022-02-27	3.1	5.47	3.73	3.1	0.009	1.17	0.0	0.05	24.84	0.01	2.316	5.71	0.00	3.1	96.9	0.0	-2.86	0.21	0.78	1.18	3.3	0.004	0.81	0.0	0.04	25.38	0.00	2.071	29.64	1.30	4.1	95.9	0.0	0.34	0.70	0.21	0.77	-0.93	2762	100	2	94	0	0	0	logfile
✔	8PXB	18002	2025-02-12	2023-07-23	3.6	4.63	3.71	4.2	0.002	0.45	0.0	0.04	9.09	0.00	2.259	7.28	0.46	3.6	96.4	0.0	2.65	0.54	0.61	-0.50	4.2	0.006	1.20	1.0	0.06	14.10	0.00	2.027	21.47	2.44	5.9	94.1	0.0	0.49	1.43	0.55	0.74	-0.85	8102	1018	2	0	0	0	0	logfile
✔	7Y5G	33619	2025-02-11	2022-06-17	3.85	4.19	3.81	4.2	0.002	0.43	0.0	0.04	12.74	0.00	2.084	2.19	0.00	0.7	99.3	0.0	-0.05	0.63	0.72	1.21	4.1	0.002	0.48	0.0	0.04	15.03	0.00	2.105	4.06	0.57	0.8	99.2	0.0	1.77	0.65	0.64	0.74	-0.48	4736	604	4	0	6	0	0	logfile
✔	8ERL	28554	2025-02-11	2022-10-12	3.9	4.58	3.40	4.1	0.005	1.28	0.0	0.07	15.42	0.01	2.296	4.84	0.27	9.5	90.5	0.0	-3.82	0.86	0.76	-0.02	4.1	0.003	0.82	0.0	0.05	15.84	0.00	2.570	16.73	3.85	8.4	91.6	0.0	-2.52	1.04	0.87	0.79	-0.44	6600	830	2	0	0	0	0	logfile
✔	8UFE	42205	2025-02-11	2023-10-04	3.68	4.10	3.84	4.1	0.005	0.79	0.0	0.04	19.16	0.00	2.205	12.83	1.76	5.3	94.4	0.2	1.92	0.49	0.72	-0.41	4.1	0.003	0.67	0.0	0.04	18.34	0.00	2.473	11.71	4.71	4.7	95.1	0.2	1.80	0.37	0.54	0.74	-0.41	3449	470	2	0	1	0	0	logfile
✔	7VZF	32227	2025-02-10	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.45	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.004	0.93	0.0	0.05	19.17	0.00	2.345	10.57	6.74	18.8	81.2	0.0	-4.25	1.85	0.37	0.63	-0.39	2628	363	3	0	0	0	0	logfile
✔	8iZZ	35878	2025-02-10	2023-04-09	3.75	3.60	3.46	3.7	0.017	3.95	17.0	0.34	16.30	0.00	1.847	34.96	0.00	15.2	84.8	0.0	-5.84	0.28	0.51	1.98	3.7	0.023	3.51	1.0	0.14	27.18	0.01	2.258	39.79	22.73	50.0	47.0	3.0	-6.99	3.53	0.29	0.49	-0.29	1342	198	22	0	0	0	0	logfile
✔	8Z7Z	39833	2025-02-10	2024-04-21	3.23	3.39	3.23	3.4	0.005	0.71	0.0	0.04	13.23	0.00	2.169	7.79	0.00	3.1	96.9	0.0	0.75	0.46	0.63	1.41	3.4	0.004	0.66	0.0	0.04	15.62	0.01	2.544	12.50	1.91	3.4	96.6	0.0	1.43	1.11	0.47	0.67	-0.21	2834	389	2	0	1	0	0	logfile
✔	8YVU	39614	2025-02-11	2024-03-29	3.9	4.30	3.86	4.2	0.003	0.71	0.0	0.04	13.76	0.00	2.277	12.74	0.00	4.1	95.5	0.4	1.38	0.50	0.63	0.56	4.2	0.003	0.71	0.0	0.04	16.38	0.00	2.599	9.64	2.83	4.3	95.5	0.2	1.55	0.51	0.53	0.66	-0.19	4216	530	10	0	2	0	0	logfile
✔	8S7E	19768	2025-02-12	2024-02-29	3.4	3.72	3.45	3.6	0.003	0.55	0.0	0.04	18.59	0.00	1.902	20.70	0.25	7.8	92.2	0.0	-1.51	0.59	0.55	0.28	3.6	0.003	0.60	0.0	0.05	18.95	0.00	2.378	13.21	2.96	5.6	94.4	0.0	-1.24	0.47	0.58	0.56	-0.12	7312	466	2	0	0	0	3648	logfile
✔	8EFP	28087	2025-02-11	2022-09-08	3.8	4.73	3.90	4.0	0.006	1.46	7.0	0.09	18.61	0.01	1.908	33.65	3.07	13.3	86.7	0.0	-4.26	0.82	0.62	-0.42	4.0	0.003	0.89	0.0	0.04	19.06	0.00	2.492	16.83	2.49	9.2	90.8	0.0	-2.27	0.85	0.84	0.71	-0.08	4705	594	2	0	0	0	0	logfile
✔	9iZU	61042	2025-02-12	2024-08-01	3.7	4.91	3.71	3.8	0.002	0.45	0.0	0.04	7.95	0.00	2.095	5.25	0.13	1.4	98.6	0.0	-0.47	0.51	0.15	0.72	3.9	0.004	0.83	0.0	0.05	13.67	0.01	2.546	19.17	1.70	5.6	94.4	0.0	-0.41	2.90	0.69	0.48	-0.07	7105	933	2	0	0	0	0	logfile
✔	7B6X	12057	2025-02-14	2020-12-08	3.6	2.59	—	2.5	0.008	1.06	0.0	0.06	14.17	0.01	2.035	44.45	0.09	13.3	86.7	0.0	-2.77	0.75	0.72	0.42	2.5	0.003	0.76	0.0	0.05	16.44	0.00	2.392	21.10	4.46	8.2	91.8	0.0	-1.20	0.52	0.75	0.71	-0.06	10470	1290	8	0	0	0	0	logfile
✔	8AZS	15770	2025-02-13	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.67	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	2.8	0.074	7.47	388.0	0.40	33.42	0.06	1.152	629.53	23.33	39.1	24.5	36.4	-9.07	18.06	0.18	0.16	-0.06	9036	1224	36	0	0	0	0	logfile
✔	8oST	17164	2025-02-13	2023-04-20	3.69	3.89	3.67	3.9	0.002	0.52	0.0	0.04	22.67	0.01	2.203	5.42	0.27	1.2	98.8	0.0	0.21	0.55	0.52	0.26	3.9	0.003	0.53	0.0	0.04	22.36	0.00	2.414	5.53	1.87	2.4	97.6	0.0	0.25	1.45	0.62	0.62	-0.06	8955	432	4	69	2	0	4058	logfile
✔	8A1R	15084	2025-02-14	2022-06-01	3.6	5.63	3.62	3.4	0.011	0.86	0.0	0.06	16.56	0.00	2.097	11.72	0.00	5.2	94.8	0.0	-0.06	0.91	0.75	-0.28	3.5	0.004	0.71	0.0	0.05	16.17	0.00	2.460	17.48	1.42	6.1	93.9	0.0	-0.17	0.58	0.95	0.86	-0.05	9286	1186	4	0	4	0	0	logfile
✔	8YMK	39396	2025-02-10	2024-03-09	3.7	3.92	1.91	7.8	0.005	1.22	1.0	0.06	11.93	0.01	2.212	16.34	0.00	14.1	84.4	1.6	-1.73	0.59	0.62	-0.11	7.7	0.003	1.14	0.0	0.06	13.52	0.00	2.612	12.37	4.51	11.2	87.5	1.3	-1.02	1.84	0.60	0.63	-0.04	2744	452	2	0	0	0	0	logfile
✔	7FG3	31577	2025-02-13	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	3.9	0.004	0.94	0.0	0.05	16.64	0.01	2.344	20.63	2.99	13.8	85.6	0.6	-3.61	0.75	0.23	0.44	-0.04	9054	1166	2	0	0	0	0	logfile

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