Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7URi	26713	2025-02-10	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	30.06	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.7	0.007	1.37	0.0	0.06	28.71	0.01	2.201	19.50	0.00	0.0	0.0	0.0	—	2.07	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7YG8	33811	2025-02-12	2022-07-11	2.97	3.59	3.04	3.0	0.002	0.48	0.0	0.03	24.52	0.00	2.042	13.48	0.00	0.0	0.0	0.0	—	0.89	0.82	—	3.0	0.008	0.71	0.0	0.04	24.57	0.00	1.803	17.58	0.00	0.0	0.0	0.0	—	0.39	0.91	0.90	—	8440	0	4	395	5	0	0	logfile
✔	7XD3	33134	2025-02-13	2022-03-26	4.05	4.16	—	3.8	0.003	0.62	0.0	0.04	24.05	0.00	1.960	1.21	0.00	0.0	0.0	0.0	—	0.85	0.74	—	3.9	0.006	0.76	0.0	0.04	24.27	0.01	1.714	13.21	0.00	0.0	0.0	0.0	—	1.80	0.87	0.80	—	9062	0	2	423	28	0	0	logfile
✔	7YGD	33816	2025-02-12	2022-07-11	3.41	4.13	3.42	3.3	0.002	0.49	0.0	0.03	24.63	0.00	2.100	14.25	0.00	0.0	0.0	0.0	—	0.90	0.81	—	3.3	0.008	0.78	0.0	0.04	25.33	0.01	1.824	28.58	0.00	0.0	0.0	0.0	—	1.89	0.91	0.89	—	8313	0	4	389	6	0	0	logfile
✔	7YCG	33738	2025-02-13	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	24.46	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.008	0.69	0.0	0.04	24.55	0.00	1.842	30.51	0.00	0.0	0.0	0.0	—	0.33	0.95	0.89	—	8661	0	3	404	4	0	0	logfile
✔	7XD5	33136	2025-02-13	2022-03-26	2.84	3.32	2.81	3.1	0.003	0.58	0.0	0.03	23.20	0.00	1.864	0.61	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.1	0.007	0.68	0.0	0.04	23.27	0.00	1.934	4.20	0.00	0.0	0.0	0.0	—	1.36	0.89	0.90	—	8714	0	3	406	30	0	0	logfile
✔	7XD4	33135	2025-02-13	2022-03-26	3.89	4.13	—	3.8	0.003	0.59	0.0	0.03	23.99	0.00	1.880	1.73	0.00	0.0	0.0	0.0	—	0.85	0.73	—	3.8	0.006	0.79	0.0	0.04	24.53	0.01	1.749	16.03	0.00	0.0	0.0	0.0	—	1.96	0.87	0.79	—	9062	0	2	423	28	0	0	logfile
✔	7XD7	33138	2025-02-13	2022-03-26	3.02	3.40	—	3.1	0.003	0.61	0.0	0.04	23.14	0.00	1.736	0.77	0.00	0.0	0.0	0.0	—	0.90	0.86	—	3.1	0.008	0.75	0.0	0.04	23.35	0.01	1.843	7.12	0.00	0.0	0.0	0.0	—	2.03	0.92	0.92	—	8693	0	2	405	30	0	0	logfile
✔	7XSN	33428	2025-02-12	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	25.09	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.008	0.71	0.0	0.04	24.73	0.01	2.105	20.74	0.00	0.0	0.0	0.0	—	0.37	0.92	0.86	—	8279	0	1	387	0	0	0	logfile
✔	7EZ0	31385	2025-02-12	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	23.64	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.008	0.80	0.0	0.04	23.88	0.01	1.829	6.42	0.00	0.0	0.0	0.0	—	1.91	0.77	0.86	—	8306	0	2	387	27	0	0	logfile
✔	8i7N	35223	2025-02-13	2023-02-01	2.98	3.12	2.92	3.0	0.006	0.66	0.0	0.04	23.30	0.00	1.982	2.00	0.00	0.0	0.0	0.0	—	0.82	0.83	—	3.0	0.002	0.47	0.0	0.03	23.04	0.00	1.947	4.30	0.00	0.0	0.0	0.0	—	0.95	0.87	0.90	—	8979	0	2	418	29	0	0	logfile
✔	6UET	20756	2025-02-11	2019-09-23	4.1	4.91	—	5.1	0.010	1.61	0.0	0.07	26.22	0.02	1.977	4.88	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.98	0.0	0.05	27.55	0.01	2.152	46.51	0.00	0.0	0.0	0.0	—	0.76	0.66	0.80	—	3869	0	2	119	1	0	1291	logfile
✔	7YCi	33740	2025-02-13	2022-07-01	2.98	4.31	3.09	3.2	0.002	0.48	0.0	0.02	24.35	0.00	1.521	15.79	0.00	0.0	0.0	0.0	—	0.93	0.84	—	3.3	0.009	0.74	0.0	0.04	24.66	0.01	1.830	25.93	0.00	0.0	0.0	0.0	—	0.96	0.95	0.90	—	8474	0	3	395	4	0	0	logfile
✔	7XD6	33137	2025-02-14	2022-03-26	2.84	3.25	2.83	3.0	0.005	0.74	0.0	0.04	23.79	0.00	1.975	1.30	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.1	0.009	0.80	0.0	0.04	23.90	0.01	1.827	6.31	0.00	0.0	0.0	0.0	—	1.33	0.88	0.89	—	9843	0	3	459	29	0	0	logfile
✔	8HD6	34670	2025-02-13	2022-11-03	3.73	4.52	3.73	3.2	0.002	0.54	0.0	0.02	23.56	0.00	1.969	2.97	0.00	0.0	0.0	0.0	—	0.90	0.78	—	3.3	0.006	0.75	0.0	0.04	25.03	0.01	1.773	20.61	0.00	0.0	0.0	0.0	—	2.17	0.91	0.82	—	8980	0	2	419	25	0	0	logfile
✔	8PPo	17806	2025-02-10	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.55	0.0	0.06	14.12	0.00	2.639	0.29	1.04	0.0	100.0	0.0	1.15	0.38	0.50	0.88	5.61	1696	240	16	0	0	0	0	logfile
✔	8HD7	34671	2025-02-13	2022-11-03	3.52	3.99	3.58	3.3	0.003	0.60	0.0	0.03	23.66	0.00	1.927	2.96	0.00	0.0	0.0	0.0	—	0.89	0.77	—	3.3	0.007	0.76	0.0	0.04	23.88	0.01	1.828	13.19	0.00	0.0	0.0	0.0	—	1.49	0.91	0.84	—	8983	0	2	419	28	0	0	logfile
✔	7YCH	33739	2025-02-13	2022-07-01	3.09	4.46	3.30	3.5	0.002	0.48	0.0	0.02	24.19	0.00	1.420	15.91	0.00	0.0	0.0	0.0	—	0.92	0.84	—	3.6	0.008	0.71	0.0	0.04	24.27	0.00	1.777	27.90	0.00	0.0	0.0	0.0	—	0.92	0.94	0.88	—	8661	0	3	404	4	0	0	logfile
✔	7PBW	13307	2025-02-14	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.003	0.72	0.0	0.04	14.22	0.01	2.236	6.63	0.15	0.0	100.0	0.0	4.78	0.28	0.77	0.90	7.22	9500	873	54	0	81	230	0	logfile
✔	7URM	26714	2025-02-10	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	28.63	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.15	0.0	0.05	27.72	0.01	2.028	23.68	0.00	0.0	0.0	0.0	—	1.30	0.15	0.53	—	1905	0	1	90	0	0	0	logfile

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