Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CXF	45988	2025-02-11	2024-07-31	3.02	3.58	3.03	3.3	0.006	0.68	0.0	0.04	25.40	0.00	1.874	7.88	0.00	0.0	0.0	0.0	—	0.92	0.90	—	3.3	0.008	0.72	0.0	0.04	24.51	0.00	1.792	5.56	0.00	0.0	0.0	0.0	—	0.38	0.93	0.92	—	4318	0	2	200	22	0	0	logfile
✔	9C1U	45130	2025-02-10	2024-05-29	2.31	2.35	2.46	2.4	0.004	0.47	0.0	0.05	10.27	0.00	2.112	2.84	0.00	0.3	99.7	0.0	0.19	0.71	0.87	6.57	2.4	0.004	0.62	0.0	0.05	14.87	0.00	2.586	8.97	4.17	0.0	100.0	0.0	0.25	0.44	0.68	0.89	6.12	2376	312	12	0	0	0	0	logfile
✔	7RZV	24779	2025-02-10	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	15.96	0.00	2.434	3.69	1.01	0.0	100.0	0.0	5.91	0.88	0.83	0.83	1.79	2562	339	6	0	0	0	0	logfile
✔	8AZ1	15729	2025-02-10	2022-09-05	3.1	3.21	3.04	3.5	0.004	0.58	0.0	0.04	10.90	0.00	2.374	8.00	0.00	0.0	100.0	0.0	-1.57	0.49	0.85	5.69	3.5	0.004	0.53	0.0	0.05	12.99	0.00	1.620	3.14	0.00	0.0	100.0	0.0	-2.21	0.43	0.47	0.85	5.53	1830	250	20	0	10	0	0	logfile
✔	7R6M	24282	2025-02-12	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	25.58	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.87	0.0	0.04	25.54	0.01	1.758	13.81	0.00	0.0	0.0	0.0	—	0.17	0.55	0.73	—	7755	0	3	362	13	0	0	logfile
✔	9C6i	45247	2025-02-12	2024-06-07	2.56	3.19	2.65	2.9	0.008	0.68	0.0	0.04	25.62	0.01	1.892	11.33	0.00	0.0	0.0	0.0	—	0.92	0.89	—	2.9	0.010	0.74	0.0	0.05	25.15	0.01	1.844	9.20	0.00	0.0	0.0	0.0	—	1.28	0.93	0.93	—	8471	0	2	393	21	0	0	logfile
✔	8PPo	17806	2025-02-10	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.55	0.0	0.06	14.12	0.00	2.639	0.29	1.04	0.0	100.0	0.0	1.15	0.38	0.50	0.88	5.61	1696	240	16	0	0	0	0	logfile
✔	7RZS	24776	2025-02-10	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.004	0.46	0.0	0.04	16.05	0.00	2.487	4.26	0.35	0.0	100.0	0.0	5.18	1.19	0.79	0.82	1.13	2445	324	6	0	0	0	0	logfile
✔	8TJV	41312	2025-02-14	2023-07-24	2.99	3.53	2.99	3.1	0.006	0.61	0.0	0.04	24.19	0.00	1.526	10.47	0.00	0.0	0.0	0.0	—	0.91	0.89	—	3.1	0.010	0.75	0.0	0.05	23.73	0.01	1.090	11.61	0.00	0.0	0.0	0.0	—	0.98	0.92	0.93	—	8778	0	2	409	32	0	0	logfile
✔	8KF4	37198	2025-02-10	2023-08-15	3.0	3.12	2.82	3.2	0.010	0.77	0.0	0.07	12.82	0.00	2.605	1.00	0.00	0.0	100.0	0.0	-4.40	0.39	0.91	6.86	3.3	0.003	0.48	0.0	0.06	14.12	0.00	2.664	1.33	0.00	0.0	100.0	0.0	-1.06	1.19	0.38	0.91	7.82	1500	204	6	0	0	0	0	logfile
✔	8FA2	28948	2025-02-10	2022-11-25	2.82	2.48	3.15	2.1	0.006	0.55	0.0	0.04	13.54	0.00	2.297	6.56	0.00	1.8	98.2	0.0	-0.12	0.76	0.79	0.72	2.0	0.002	0.43	0.0	0.03	14.51	0.00	2.635	6.17	0.67	0.0	100.0	0.0	5.78	0.35	0.76	0.79	0.45	2577	342	6	0	0	0	0	logfile
✔	7EXA	31367	2025-02-10	2021-05-26	2.9	2.57	—	2.8	0.010	1.22	0.0	0.07	16.18	0.00	1.984	12.75	1.60	2.2	97.8	0.0	-0.45	0.32	0.85	4.31	2.8	0.002	0.50	0.0	0.04	17.62	0.00	2.597	2.78	2.24	0.0	100.0	0.0	2.57	0.87	0.32	0.86	3.28	3088	374	2	6	0	0	0	logfile
✔	8Q2L	18112	2025-02-10	2023-08-02	2.2	2.31	2.29	2.3	0.013	2.22	2.0	0.22	14.08	0.01	2.506	1.04	0.00	1.9	98.1	0.0	-2.11	0.40	0.87	5.99	2.3	0.004	0.64	0.0	0.05	19.35	0.00	2.634	2.83	1.85	0.0	100.0	0.0	-1.91	1.24	0.41	0.93	7.16	3300	432	6	0	0	0	0	logfile
✔	8TJX	41313	2025-02-12	2023-07-24	2.44	3.10	2.65	2.9	0.006	0.64	0.0	0.04	24.81	0.01	1.872	12.24	0.00	0.0	0.0	0.0	—	0.85	0.85	—	2.9	0.007	0.63	0.0	0.04	23.99	0.01	1.833	9.77	0.00	0.0	0.0	0.0	—	0.82	0.84	0.86	—	7839	0	2	365	27	0	0	logfile
✔	7RZU	24778	2025-02-10	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.004	0.48	0.0	0.03	15.71	0.00	2.609	5.88	2.81	0.0	100.0	0.0	5.30	0.49	0.80	0.82	1.76	2439	324	6	0	0	0	0	logfile
✔	8UPT	42455	2025-02-10	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.72	0.0	0.04	27.67	0.01	2.087	17.90	0.00	0.0	0.0	0.0	—	1.00	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✔	8K15	36786	2025-02-14	2023-07-10	2.58	2.79	2.58	2.9	0.009	1.04	0.0	0.06	25.09	0.01	1.850	4.02	0.00	0.0	0.0	0.0	—	0.70	0.81	—	2.8	0.009	0.91	0.0	0.05	24.72	0.01	1.745	4.29	0.00	0.0	0.0	0.0	—	0.29	0.68	0.82	—	10093	0	2	470	2	0	0	logfile
✔	8KF5	37199	2025-02-10	2023-08-15	3.4	3.42	3.08	3.6	0.009	0.83	0.0	0.08	15.44	0.00	2.343	20.58	8.00	3.1	96.9	0.0	-3.84	0.38	0.87	7.61	3.5	0.003	0.59	0.0	0.06	15.87	0.00	2.658	4.32	0.00	0.0	100.0	0.0	-0.04	0.92	0.38	0.88	8.22	1500	204	6	0	0	0	0	logfile
✔	8TJU	41311	2025-02-14	2023-07-24	3.46	4.75	3.48	3.4	0.006	0.67	0.0	0.04	25.59	0.01	1.874	27.33	0.00	0.0	0.0	0.0	—	0.93	0.86	—	3.4	0.008	0.71	0.0	0.04	24.83	0.01	1.789	23.91	0.00	0.0	0.0	0.0	—	0.46	0.94	0.91	—	8771	0	2	409	27	0	0	logfile
✔	7XD7	33138	2025-02-13	2022-03-26	3.02	3.40	—	3.1	0.003	0.61	0.0	0.04	23.14	0.00	1.736	0.77	0.00	0.0	0.0	0.0	—	0.90	0.86	—	3.1	0.008	0.75	0.0	0.04	23.35	0.01	1.843	7.12	0.00	0.0	0.0	0.0	—	2.03	0.92	0.92	—	8693	0	2	405	30	0	0	logfile

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