Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8J2M	35950	2025-02-11	2023-04-14	3.4	4.10	3.44	4.0	0.009	1.36	10.0	0.08	18.83	0.01	2.121	8.77	2.91	3.3	96.7	0.0	-2.01	0.59	0.75	2.41	4.0	0.003	0.79	0.0	0.04	17.86	0.00	2.495	11.75	3.92	2.5	97.5	0.0	1.27	1.37	0.52	0.79	1.56	6574	848	4	0	2	0	0	logfile
✔	7WSi	32759	2025-02-11	2022-01-29	3.32	3.90	—	3.8	0.003	0.67	0.0	0.04	12.25	0.00	2.122	8.82	0.00	7.9	92.1	0.0	-0.23	0.66	0.77	1.76	3.8	0.003	0.76	0.0	0.04	16.23	0.00	2.495	9.34	3.71	8.4	91.6	0.0	0.10	1.45	0.58	0.79	2.11	5701	743	3	0	0	0	0	logfile
✔	7VAE	31838	2025-02-11	2021-08-29	3.55	4.03	—	4.0	0.003	0.67	0.0	0.04	13.73	0.01	2.212	11.73	0.00	7.5	92.5	0.0	-0.15	0.62	0.76	2.31	4.0	0.003	0.80	0.0	0.05	16.29	0.00	2.521	12.53	3.91	7.1	92.9	0.0	0.05	0.67	0.58	0.77	1.89	5643	736	3	0	0	0	0	logfile
✔	7SWQ	25482	2025-02-12	2021-11-21	3.79	4.09	3.83	4.0	0.004	0.74	0.0	0.04	18.24	0.00	1.915	13.13	0.00	10.7	89.3	0.0	-2.38	0.80	0.76	2.70	4.0	0.005	0.73	0.0	0.05	19.58	0.00	1.894	13.50	3.33	9.2	90.8	0.0	-2.02	0.62	0.83	0.83	1.98	6998	791	4	35	1	0	0	logfile
✔	8ET7	28587	2025-02-12	2022-10-16	3.77	4.05	3.85	4.0	0.003	0.49	0.0	0.03	11.06	0.00	2.342	3.90	0.24	3.2	96.8	0.0	1.90	0.49	0.70	1.68	4.0	0.003	0.56	0.0	0.03	15.72	0.00	2.398	6.83	2.83	4.5	95.5	0.0	1.96	1.50	0.49	0.72	1.52	8111	532	3	0	3	0	4007	logfile
✔	7F4F	31449	2025-02-13	2021-06-18	2.9	3.43	—	3.2	0.010	1.09	0.0	0.06	12.60	0.01	2.164	4.69	0.00	3.9	96.1	0.0	-0.89	0.73	0.82	3.96	3.2	0.007	0.79	0.0	0.05	15.51	0.00	2.264	9.61	1.57	2.3	97.7	0.0	1.17	1.68	0.70	0.84	3.46	8881	1138	8	0	2	0	0	logfile
✔	7SWF	25472	2025-02-12	2021-11-19	3.79	4.09	3.83	4.0	0.005	0.73	0.0	0.05	17.16	0.00	2.039	15.69	1.33	9.1	90.9	0.0	-1.82	0.84	0.81	3.02	4.0	0.003	0.72	0.0	0.04	18.02	0.00	2.054	11.82	1.62	6.8	93.2	0.0	-1.48	1.04	0.81	0.83	1.93	6873	778	4	34	1	0	0	logfile
✔	7XoU	33359	2025-02-12	2022-05-01	3.2	3.39	3.29	3.4	0.004	0.71	0.0	0.04	13.47	0.00	2.205	11.37	0.11	5.1	94.9	0.0	-3.52	0.56	0.66	1.65	3.5	0.005	0.75	0.0	0.05	16.33	0.00	2.351	13.07	2.89	5.7	94.3	0.0	-0.91	0.57	0.55	0.68	1.36	8247	1043	7	0	1	0	0	logfile
✔	7VAD	31837	2025-02-11	2021-08-29	3.41	4.00	—	3.9	0.002	0.59	0.0	0.04	13.01	0.01	2.227	8.39	0.00	7.1	92.9	0.0	0.34	0.64	0.76	1.49	3.9	0.005	0.83	0.0	0.05	16.30	0.00	2.482	13.37	6.81	7.9	92.1	0.0	0.15	0.76	0.61	0.81	2.21	5697	743	3	0	0	0	0	logfile
✔	8CG3	16628	2025-02-10	2023-02-03	2.39	2.55	2.34	2.5	0.012	1.69	0.0	0.08	14.77	0.01	2.619	1.73	0.00	2.3	97.7	0.0	-4.90	0.52	0.96	8.23	2.5	0.004	0.87	0.0	0.04	16.05	0.00	2.656	0.35	0.36	1.8	98.2	0.0	-4.80	0.31	0.51	0.94	7.47	3040	445	5	0	0	0	0	logfile
✔	7VAG	31840	2025-02-11	2021-08-29	3.32	3.68	—	3.7	0.002	0.66	0.0	0.04	13.27	0.00	2.109	7.78	0.15	8.3	91.7	0.0	0.41	0.58	0.76	1.46	3.7	0.005	1.18	1.0	0.06	16.31	0.00	2.374	11.36	3.10	7.5	92.5	0.0	0.09	1.35	0.55	0.77	1.94	5697	743	3	0	0	0	0	logfile
✔	7V6A	31740	2025-02-14	2021-08-20	3.6	2.46	—	2.1	0.004	0.71	0.0	0.05	14.08	0.00	2.113	14.17	0.00	4.4	95.6	0.0	-1.88	0.71	0.70	2.85	2.0	0.004	0.71	0.0	0.04	16.59	0.00	2.507	10.92	4.34	4.2	95.8	0.0	-1.04	0.46	0.71	0.70	1.74	8584	1122	6	0	1	0	0	logfile
✔	7WiG	32529	2025-02-13	2022-01-03	2.7	2.14	—	1.8	0.006	0.75	0.0	0.05	13.30	0.00	2.192	6.75	0.00	2.0	98.0	0.0	1.11	0.78	0.77	3.19	1.8	0.003	0.57	0.0	0.04	15.37	0.00	2.518	4.78	1.84	2.4	97.6	0.0	1.49	0.34	0.80	0.80	3.27	8931	1139	6	0	1	0	0	logfile
✔	7X83	33054	2025-02-10	2022-03-11	3.4	3.15	2.86	3.5	0.009	0.82	0.0	0.06	13.35	0.00	2.027	17.05	0.00	15.8	84.2	0.0	-5.71	0.38	0.84	4.55	3.5	0.003	0.63	0.0	0.05	14.86	0.00	2.619	9.21	5.03	9.8	90.2	0.0	-5.05	0.95	0.45	0.83	4.49	3258	405	3	0	0	0	0	logfile
✔	6VXi	21438	2025-02-13	2020-02-21	3.7	3.67	—	3.7	0.008	1.00	0.0	0.06	15.95	0.00	2.037	6.73	2.07	9.5	90.3	0.2	-6.00	0.61	0.79	2.72	3.7	0.003	0.76	0.0	0.04	16.60	0.00	2.408	9.51	3.53	7.0	93.0	0.0	-1.85	0.60	0.60	0.79	2.40	8898	1132	4	0	3	0	0	logfile
✔	7To2	26027	2025-02-11	2022-01-22	3.2	3.55	—	3.5	0.011	1.13	0.0	0.07	15.50	0.00	2.284	5.58	0.84	5.0	95.0	0.0	-1.96	0.80	0.85	2.46	3.5	0.003	0.54	0.0	0.04	17.11	0.00	2.483	5.41	1.34	5.4	94.6	0.0	0.55	0.39	0.77	0.85	2.36	6052	670	3	30	3	0	0	logfile
✔	6UPH	20839	2025-02-14	2019-10-17	2.7	3.01	2.85	3.0	0.007	0.67	0.0	0.04	26.07	0.00	2.216	4.33	0.00	1.8	98.2	0.0	-5.67	0.70	0.87	4.13	2.9	0.005	0.62	0.0	0.04	27.19	0.00	2.074	3.30	2.10	1.3	98.7	0.0	1.22	0.34	0.66	0.87	2.49	10677	732	10	238	0	0	0	logfile
✔	8D9N	27267	2025-02-12	2022-06-10	4.4	4.74	3.88	34.0	0.003	0.60	0.0	0.04	13.21	0.00	2.107	2.77	0.38	5.8	94.2	0.0	-0.81	0.28	-0.07	—	20.0	0.003	0.69	0.0	0.04	13.31	0.00	2.441	4.39	0.00	5.2	94.8	0.0	0.53	0.58	0.36	-0.04	—	7186	902	2	0	0	0	0	logfile
✔	8K0Z	36781	2025-02-13	2023-07-10	3.7	3.89	3.61	3.9	0.010	1.06	0.0	0.06	9.69	0.01	2.364	1.80	0.00	7.8	92.0	0.2	-6.16	0.68	0.83	2.81	3.9	0.004	0.77	0.0	0.04	14.41	0.00	2.583	3.66	2.38	6.1	93.9	0.0	-0.78	1.39	0.66	0.85	2.03	8484	1092	2	0	0	0	0	logfile
✔	7V68	31738	2025-02-14	2021-08-20	3.4	2.57	—	3.3	0.007	0.83	1.0	0.05	12.84	0.02	2.151	16.41	0.00	3.1	96.8	0.1	-0.44	0.71	0.69	1.57	3.3	0.004	0.72	0.0	0.05	15.66	0.00	2.386	16.53	4.36	3.5	96.5	0.0	-0.19	0.46	0.72	0.72	1.56	8577	1122	6	0	2	0	0	logfile

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