Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UoX	20834	2025-02-14	2019-10-15	4.02	4.28	—	4.1	0.010	1.18	1.0	0.08	14.59	0.01	2.461	0.89	0.00	8.2	91.8	0.0	-4.01	0.66	0.78	—	4.1	0.003	0.69	0.0	0.04	12.10	0.00	2.430	6.64	0.00	5.6	94.4	0.0	-1.34	0.97	0.68	0.80	—	9138	1161	4	0	14	0	0	logfile
✔	6DZV	8940	2025-02-11	2018-07-05	4.2	4.78	4.79	4.8	0.013	0.70	0.0	0.08	12.11	0.01	2.088	3.69	0.00	3.8	96.2	0.0	-4.08	0.49	0.64	—	4.7	0.005	0.88	0.0	0.05	13.04	0.01	2.508	20.02	0.00	6.3	93.7	0.0	-1.15	1.52	0.54	0.72	—	6121	765	5	0	4	0	0	logfile
✔	6VQi	21351	2025-02-11	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	3.8	0.004	0.67	0.0	0.04	4.97	0.00	2.552	4.04	0.00	8.6	91.3	0.1	0.87	0.82	0.57	0.72	—	5278	1062	8	0	0	0	0	logfile
✔	8FF3	29037	2025-02-10	2022-12-07	3.09	2.31	2.69	3.2	0.002	0.43	0.0	0.06	8.70	0.00	2.616	1.83	0.00	0.0	100.0	0.0	-2.15	0.40	0.67	4.94	3.2	0.002	0.47	0.0	0.05	11.47	0.00	2.698	4.58	0.00	0.7	99.3	0.0	-1.94	0.46	0.35	0.72	4.33	2190	150	6	0	0	0	1122	logfile
✔	7YGD	33816	2025-02-12	2022-07-11	3.41	4.13	3.42	3.3	0.002	0.49	0.0	0.03	24.63	0.00	2.100	14.25	0.00	0.0	0.0	0.0	—	0.90	0.81	—	3.3	0.008	0.78	0.0	0.04	25.33	0.01	1.824	28.58	0.00	0.0	0.0	0.0	—	1.89	0.91	0.89	—	8313	0	4	389	6	0	0	logfile
✔	6Uo9	20823	2025-02-14	2019-10-14	4.8	5.30	—	4.9	0.006	1.38	1.0	0.07	14.28	0.01	2.227	6.41	1.07	8.0	92.0	0.0	-3.80	0.81	0.80	—	4.9	0.004	0.78	0.0	0.05	12.99	0.00	2.371	9.97	0.00	6.3	93.7	0.0	0.04	1.35	0.81	0.81	—	9915	1365	9	0	14	0	0	logfile
✔	6BX3	7303	2025-02-14	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	24.88	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.003	0.84	0.0	0.05	13.09	0.00	2.420	16.14	0.00	14.2	85.7	0.1	-3.34	1.36	0.74	0.71	—	10456	1413	7	0	0	0	0	logfile
✔	7Wi8	32527	2025-02-14	2022-01-03	4.17	4.59	—	4.4	0.008	1.00	0.0	0.06	14.72	0.01	2.021	5.40	1.22	14.2	85.7	0.1	-5.88	0.69	0.79	—	4.4	0.002	0.68	0.0	0.04	12.32	0.00	2.597	8.16	0.00	10.9	89.1	0.0	-2.94	1.13	0.68	0.77	—	9268	1446	4	0	4	0	0	logfile
✔	7PMW	13542	2025-02-14	2021-09-03	4.1	4.24	4.05	4.1	0.002	0.47	1.0	0.04	9.25	0.00	2.047	8.47	0.91	2.8	97.2	0.0	0.56	0.58	0.75	—	4.1	0.005	0.62	0.0	0.04	11.79	0.00	2.328	8.47	0.00	5.2	94.8	0.0	0.10	1.20	0.59	0.77	—	10153	643	2	0	0	0	5123	logfile
✔	6MET	9109	2025-02-14	2018-09-07	4.5	4.68	4.22	4.4	0.007	1.08	0.0	0.07	13.54	0.01	1.985	12.02	1.37	8.0	91.5	0.5	-4.19	0.58	0.54	—	4.4	0.003	0.79	0.0	0.05	11.13	0.00	2.377	10.84	0.00	7.2	92.7	0.1	-1.86	1.22	0.68	0.80	—	8911	1074	14	0	32	0	0	logfile
✔	7JGG	22326	2025-02-11	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.6	0.002	0.49	0.0	0.03	12.90	0.00	2.246	73.58	0.00	4.5	95.5	0.0	1.76	1.71	0.67	0.70	—	4210	506	1	0	0	0	28	logfile
✔	7K9L	22754	2025-02-14	2020-09-29	4.9	4.39	—	4.7	0.007	1.19	0.0	0.07	15.28	0.01	2.254	9.45	3.96	3.5	96.5	0.0	-1.98	0.67	0.78	—	4.6	0.004	0.74	0.0	0.04	13.68	0.00	2.525	16.66	0.00	4.1	95.9	0.0	-0.01	0.96	0.69	0.78	—	10472	1372	4	0	0	0	0	logfile
✔	7VFP	31957	2025-02-13	2021-09-13	4.03	4.38	—	4.2	0.004	0.84	0.0	0.05	13.88	0.00	1.933	18.11	0.00	6.1	93.8	0.1	0.05	0.65	0.78	—	4.2	0.004	0.79	0.0	0.05	14.04	0.00	2.002	13.94	0.00	5.5	94.4	0.1	0.34	0.56	0.64	0.77	—	8857	1130	8	0	3	2	0	logfile
✔	7YG8	33811	2025-02-12	2022-07-11	2.97	3.59	3.04	3.0	0.002	0.48	0.0	0.03	24.52	0.00	2.042	13.48	0.00	0.0	0.0	0.0	—	0.89	0.82	—	3.0	0.008	0.71	0.0	0.04	24.57	0.00	1.803	17.58	0.00	0.0	0.0	0.0	—	0.39	0.91	0.90	—	8440	0	4	395	5	0	0	logfile
✔	7QTJ	14142	2025-02-14	2022-01-14	4.01	4.23	—	4.1	0.004	0.73	4.0	0.05	15.20	0.01	2.144	8.44	1.27	5.2	94.5	0.3	0.17	0.63	0.74	—	4.1	0.002	0.64	0.0	0.04	13.26	0.00	2.421	7.11	0.00	4.6	95.2	0.2	-0.35	0.46	0.63	0.74	—	9942	1280	8	0	5	0	0	logfile
✔	6DZY	8942	2025-02-12	2018-07-05	4.1	4.52	4.39	4.6	0.006	0.88	4.0	0.06	12.39	0.01	1.386	9.20	1.32	4.7	95.2	0.1	-2.99	0.42	0.61	—	4.5	0.003	0.80	0.0	0.05	12.93	0.00	2.481	12.16	0.00	5.7	94.2	0.1	-0.52	1.84	0.44	0.67	—	7842	988	6	0	4	0	0	logfile
✔	8CGG	16642	2025-02-10	2023-02-04	2.5	2.67	2.48	2.7	0.011	1.67	0.0	0.08	16.62	0.01	2.637	6.41	0.00	11.5	88.5	0.0	-5.62	0.55	0.94	8.29	2.7	0.004	0.85	0.0	0.04	17.07	0.00	2.634	0.78	0.00	5.1	94.9	0.0	-4.93	0.95	0.51	0.92	7.73	2710	400	5	0	0	0	0	logfile
✔	6JC3	9793	2025-02-11	2019-01-28	4.8	4.87	—	4.8	0.010	1.35	2.0	0.07	16.29	0.01	1.512	30.30	3.10	10.1	89.1	0.8	-4.39	0.42	0.78	—	4.7	0.003	0.67	0.0	0.04	14.43	0.00	2.590	7.69	0.00	4.1	95.9	0.0	0.81	4.20	0.42	0.80	—	3154	391	2	6	0	0	0	logfile
✔	7oCY	12816	2025-02-12	2021-04-28	4.25	4.55	4.29	4.4	0.003	0.62	0.0	0.04	12.49	0.00	1.980	9.97	0.00	4.9	95.1	0.0	-0.08	0.73	0.77	—	4.4	0.003	0.66	0.0	0.04	12.69	0.00	2.471	7.65	0.00	2.2	97.8	0.0	0.98	1.14	0.74	0.78	—	7994	1243	3	0	0	0	0	logfile
✔	7YR6	34047	2025-02-11	2022-08-09	4.8	5.13	4.65	4.7	0.004	0.88	0.0	0.05	26.03	0.00	2.291	7.11	3.30	15.1	84.9	0.0	-5.39	0.81	0.74	—	4.7	0.003	0.66	0.0	0.04	25.45	0.00	2.424	18.05	0.00	19.8	80.2	0.0	-5.07	1.11	0.82	0.79	—	4248	220	5	118	0	0	0	logfile

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