Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EJG	28181	2025-02-14	2022-09-16	3.13	3.83	3.14	3.5	0.025	1.94	3.0	0.17	20.95	0.01	2.106	0.88	0.00	6.4	93.6	0.0	-1.09	0.86	0.81	3.20	3.5	0.004	0.88	0.0	0.05	14.16	0.00	2.348	7.55	2.17	8.0	91.7	0.3	-0.85	1.51	0.86	0.81	2.69	9966	1083	36	0	102	0	0	logfile
✔	6HQE	0252	2025-02-13	2018-09-24	4.4	4.34	—	4.4	0.009	1.25	0.0	0.06	9.67	0.01	2.307	6.79	0.00	4.8	95.2	0.0	-7.05	0.65	0.85	—	4.4	0.004	0.79	0.0	0.04	12.00	0.01	2.499	16.93	0.00	4.5	95.5	0.0	1.25	0.97	0.64	0.85	—	9360	1196	52	0	0	0	0	logfile
✔	8A64	15205	2025-02-12	2022-06-16	4.6	7.63	4.66	4.6	0.008	0.86	0.0	0.06	10.17	0.01	2.112	20.40	0.00	5.8	94.2	0.0	-1.55	0.91	0.78	—	4.7	0.003	0.68	0.0	0.04	5.83	0.00	2.546	8.96	0.00	6.3	93.7	0.0	-1.04	1.34	0.91	0.79	—	6737	1354	4	0	3	0	0	logfile
✔	7B5N	12041	2025-02-14	2020-12-05	3.6	3.39	3.52	3.7	0.007	0.79	0.0	0.05	15.39	0.00	1.998	13.46	0.09	9.3	90.7	0.0	-1.35	0.78	0.81	1.56	3.6	0.003	0.63	0.0	0.04	17.03	0.00	2.436	7.41	2.47	5.3	94.7	0.0	0.15	0.39	0.76	0.79	1.07	9965	1229	9	0	10	0	0	logfile
✔	8EU2	28602	2025-02-13	2022-10-18	2.93	2.77	3.14	2.1	0.005	0.82	0.0	0.05	28.13	0.01	2.381	2.44	0.00	2.5	97.5	0.0	-0.81	0.82	0.81	2.88	2.0	0.004	0.65	0.0	0.04	28.43	0.01	2.497	9.31	4.35	2.1	97.9	0.0	2.71	0.41	0.84	0.85	2.03	8682	524	8	220	0	0	0	logfile
✔	8JJP	36364	2025-02-13	2023-05-31	2.9	3.15	3.04	3.1	0.003	0.60	0.0	0.04	16.87	0.01	2.202	6.48	3.84	3.6	96.4	0.0	0.22	0.64	0.86	2.55	3.1	0.003	0.56	0.0	0.04	16.57	0.00	2.585	5.17	3.54	3.8	96.2	0.0	0.67	1.22	0.65	0.87	2.70	9165	1161	7	0	1	0	0	logfile
✔	5oH0	3809	2025-02-11	2017-07-13	4.2	4.36	—	4.3	0.003	0.75	0.0	0.05	8.94	0.00	2.029	3.32	0.00	1.9	98.1	0.0	-3.74	0.64	0.84	—	4.2	0.004	0.61	0.0	0.04	11.09	0.00	2.575	4.40	0.00	3.9	96.1	0.0	-2.45	0.66	0.64	0.86	—	6588	942	6	0	0	0	0	logfile
✔	7R8D	24316	2025-02-13	2021-06-26	3.2	3.37	—	3.4	0.002	0.65	0.0	0.05	14.26	0.00	2.202	6.45	1.93	4.5	95.5	0.0	-1.18	0.61	0.83	1.57	3.3	0.002	0.57	0.0	0.04	15.18	0.00	2.616	6.34	3.33	4.1	95.9	0.0	1.11	0.90	0.62	0.86	1.61	8762	1090	4	0	8	0	0	logfile
✔	7N4X	24180	2025-02-12	2021-06-04	3.33	3.49	—	3.5	0.014	1.76	0.0	0.21	15.86	0.01	2.134	5.53	1.23	7.5	92.5	0.0	-3.15	0.52	0.76	2.75	3.5	0.003	0.59	0.0	0.04	14.96	0.00	2.399	5.33	2.22	3.7	96.3	0.0	0.74	0.41	0.70	0.87	2.03	7647	953	5	0	13	0	0	logfile
✔	7DTW	30856	2025-02-14	2021-01-06	4.5	4.74	—	3.6	0.008	1.01	0.0	0.06	13.83	0.01	2.267	9.20	0.00	10.3	89.7	0.0	-4.26	0.71	0.78	—	3.7	0.002	0.56	0.0	0.04	12.14	0.00	2.029	5.51	0.00	6.3	93.6	0.1	-0.94	1.22	0.71	0.79	—	10250	1556	8	0	14	0	0	logfile
✔	6W2Y	21534	2025-02-14	2020-03-08	3.2	3.42	—	3.4	0.007	0.73	0.0	0.06	14.89	0.00	2.193	10.12	0.12	8.3	91.7	0.0	-3.95	0.67	0.78	2.98	3.4	0.005	0.74	0.0	0.05	14.91	0.00	2.438	6.94	2.40	4.3	95.7	0.0	-0.42	0.51	0.66	0.82	2.42	9721	1327	6	0	14	0	0	logfile
✔	6TAT	10427	2025-02-11	2019-10-30	3.7	2.79	—	2.9	0.005	0.91	0.0	0.05	15.56	0.01	0.722	5.86	0.68	6.8	93.2	0.0	-4.23	0.61	0.78	2.00	2.9	0.003	0.62	0.0	0.04	18.39	0.01	2.201	3.64	2.16	6.0	94.0	0.0	0.49	0.54	0.61	0.78	1.38	6790	820	5	0	0	0	0	logfile
✔	7X23	32956	2025-02-14	2022-02-25	3.2	2.34	3.00	3.0	0.004	0.59	0.0	0.04	13.25	0.00	2.232	9.24	0.00	2.9	97.1	0.0	1.28	0.53	0.64	1.83	3.0	0.003	0.59	0.0	0.04	15.59	0.00	2.216	8.49	1.83	3.7	96.3	0.0	0.90	0.99	0.56	0.77	1.88	9976	1262	5	0	5	7	0	logfile
✔	6TAU	10428	2025-02-12	2019-10-30	3.7	2.83	—	3.7	0.006	0.99	0.0	0.06	15.44	0.01	1.283	13.22	0.23	6.5	93.5	0.0	-4.23	0.55	0.75	1.32	3.0	0.004	0.65	0.0	0.04	17.53	0.00	2.497	5.50	2.48	6.5	93.5	0.0	0.41	0.63	0.57	0.77	1.57	8148	984	6	0	0	0	0	logfile
✔	6XJB	22205	2025-02-14	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.11	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.003	0.63	0.0	0.04	15.50	0.00	2.502	10.56	3.25	7.5	92.5	0.0	-1.55	1.82	0.88	0.85	1.91	10070	1277	1	0	0	0	0	logfile
✔	8oNT	17000	2025-02-11	2023-04-03	3.66	3.95	3.45	3.9	0.006	0.67	0.0	0.04	16.92	0.01	1.908	33.89	0.87	6.7	93.3	0.0	1.63	0.63	0.79	0.81	3.9	0.004	0.63	0.0	0.04	15.90	0.00	2.505	7.64	3.48	6.2	93.8	0.0	1.92	0.36	0.62	0.78	1.16	4316	558	3	0	1	1	0	logfile
✔	7X21	32954	2025-02-14	2022-02-25	2.8	2.23	2.65	2.6	0.005	1.15	0.0	0.05	14.86	0.01	1.943	7.40	0.00	4.0	96.0	0.0	0.45	0.58	0.79	3.97	2.6	0.002	0.77	0.0	0.04	16.51	0.00	2.021	5.50	2.58	3.2	96.8	0.0	0.86	0.33	0.60	0.81	3.12	10167	1263	5	0	10	18	0	logfile
✔	8E3Y	27873	2025-02-13	2022-08-17	2.3	2.68	2.31	2.6	0.003	0.60	0.0	0.05	12.65	0.00	2.237	5.72	0.11	2.0	98.0	0.0	1.26	0.72	0.85	4.19	2.6	0.003	0.55	0.0	0.04	15.64	0.00	2.471	5.55	0.53	1.9	98.1	0.0	1.71	0.79	0.75	0.89	4.25	8966	1139	8	0	0	14	0	logfile
✔	7FCi	31526	2025-02-11	2021-07-14	3.3	3.20	3.10	3.4	0.003	0.60	0.0	0.04	16.43	0.01	2.250	7.53	4.55	3.6	96.4	0.0	0.59	0.52	0.76	2.38	3.4	0.003	0.56	0.0	0.04	16.45	0.00	2.579	6.47	3.61	2.9	97.1	0.0	0.89	0.25	0.68	0.87	2.19	5613	734	3	0	0	0	0	logfile
✔	7R89	24312	2025-02-14	2021-06-26	2.6	2.92	—	2.9	0.002	0.56	0.0	0.04	14.78	0.00	2.221	7.92	3.39	3.8	96.2	0.0	-1.46	0.71	0.86	3.40	2.8	0.005	0.94	1.0	0.04	15.93	0.00	2.246	5.37	3.65	4.6	95.4	0.0	0.99	0.97	0.72	0.90	3.68	10531	1332	5	0	1	0	0	logfile

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