Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZZ0	60585	2025-02-13	2024-06-18	3.43	3.30	3.36	3.5	0.003	0.58	0.0	0.04	17.58	0.01	2.123	9.76	0.00	1.9	98.1	0.0	2.96	0.67	0.80	0.46	3.5	0.003	0.56	0.0	0.04	17.80	0.00	2.521	7.78	1.91	1.8	98.2	0.0	3.63	1.39	0.67	0.82	0.53	8914	1174	10	0	0	3	0	logfile
✔	7KZX	23092	2025-02-14	2020-12-10	4.0	4.50	4.05	4.2	0.006	0.81	0.0	0.05	15.75	0.01	2.031	19.41	0.00	9.3	90.5	0.2	-2.29	0.78	0.80	—	4.2	0.003	0.71	0.0	0.04	16.85	0.00	2.518	11.82	2.10	5.5	94.5	0.1	-0.78	1.21	0.78	0.79	—	10432	1361	6	0	0	0	0	logfile
✔	7E9P	31035	2025-02-11	2021-03-04	3.69	4.11	—	4.0	0.005	0.78	0.0	0.05	16.13	0.00	2.218	11.34	0.00	7.5	92.5	0.0	-2.51	0.74	0.81	2.88	4.0	0.003	0.65	0.0	0.04	14.96	0.00	2.451	8.64	1.85	5.7	94.3	0.0	-1.53	1.20	0.74	0.81	2.18	4898	639	4	0	1	0	0	logfile
✔	7UN3	26612	2025-02-13	2022-04-08	3.5	3.80	3.51	3.8	0.003	0.61	0.0	0.04	13.63	0.01	1.936	13.52	0.00	5.3	94.7	0.0	-0.87	0.63	0.63	1.49	3.8	0.005	0.75	0.0	0.05	16.80	0.01	2.403	13.90	2.56	4.5	95.5	0.0	-0.68	1.15	0.66	0.69	1.95	9423	1164	4	0	0	0	0	logfile
✔	8F6E	28881	2025-02-14	2022-11-16	3.8	4.02	3.70	4.0	0.003	0.55	0.0	0.04	13.52	0.00	2.060	5.75	0.00	5.4	94.2	0.4	-0.77	0.72	0.75	2.20	4.0	0.004	0.78	0.0	0.04	15.75	0.00	2.017	9.05	2.62	6.0	93.5	0.4	-1.27	1.21	0.70	0.71	2.27	10478	1366	8	0	8	0	0	logfile
✔	7SY4	25516	2025-02-11	2021-11-24	3.35	4.12	—	3.8	0.005	0.85	0.0	0.05	13.36	0.01	2.345	2.34	0.00	1.6	98.4	0.0	-0.68	0.83	0.84	3.10	3.8	0.003	0.59	0.0	0.04	15.64	0.00	2.454	6.95	0.71	2.8	97.2	0.0	1.78	1.18	0.83	0.85	2.59	6554	797	4	0	7	0	0	logfile
✔	7SY0	25512	2025-02-11	2021-11-24	3.0	3.75	—	3.5	0.005	0.84	0.0	0.06	13.35	0.01	2.295	2.42	0.00	1.4	98.6	0.0	-0.49	0.80	0.83	3.46	3.5	0.003	0.60	0.0	0.04	15.54	0.00	2.432	6.10	1.57	2.0	98.0	0.0	1.82	0.58	0.80	0.84	2.94	6553	797	4	0	7	0	0	logfile
✔	7QVM	14180	2025-02-13	2022-01-21	3.25	3.83	—	3.6	0.003	0.64	0.0	0.04	12.94	0.00	2.156	11.45	0.00	3.6	96.4	0.0	0.22	0.72	0.78	2.24	3.6	0.004	0.70	0.0	0.04	15.49	0.00	2.452	11.45	2.37	3.9	96.1	0.0	0.37	0.79	0.72	0.80	1.87	8528	1094	7	0	1	0	0	logfile
✔	7ZNU	14814	2025-02-13	2022-04-22	4.0	4.28	4.04	4.1	0.003	0.64	0.0	0.04	15.16	0.00	2.173	9.52	0.00	3.2	96.7	0.2	1.40	0.69	0.74	—	4.1	0.003	0.87	0.0	0.05	17.22	0.00	2.307	11.63	1.41	5.5	94.5	0.0	1.12	0.94	0.71	0.77	—	8730	1112	4	0	4	0	0	logfile
✔	7MJi	23874	2025-02-10	2021-04-20	2.81	3.32	—	3.2	0.006	0.81	0.0	0.05	12.49	0.01	2.367	2.85	0.00	2.8	97.2	0.0	-0.83	0.56	0.84	4.52	3.2	0.003	0.58	0.0	0.04	15.24	0.00	2.546	7.12	2.21	1.9	98.1	0.0	-0.05	0.46	0.56	0.85	4.47	2522	320	3	0	1	0	0	logfile
✔	7SXY	25510	2025-02-11	2021-11-24	2.79	3.53	—	3.2	0.005	0.84	0.0	0.06	13.17	0.01	2.303	2.81	0.00	1.3	98.7	0.0	-0.48	0.82	0.87	3.37	3.3	0.003	0.55	0.0	0.04	14.83	0.00	2.426	4.92	0.71	1.5	98.5	0.0	1.45	0.40	0.81	0.87	2.87	6557	797	4	0	7	0	0	logfile
✔	7MJN	23879	2025-02-11	2021-04-20	3.29	4.21	—	3.7	0.005	0.84	0.0	0.05	13.38	0.01	2.295	3.37	0.00	2.4	97.6	0.0	-1.29	0.88	0.85	2.95	3.7	0.003	0.61	0.0	0.04	14.46	0.00	2.582	6.67	0.71	1.9	98.1	0.0	1.38	1.06	0.88	0.86	2.47	6526	797	4	0	5	0	0	logfile
✔	8oL5	16949	2025-02-10	2023-03-30	3.4	3.10	1.47	3.0	0.003	0.44	0.0	0.06	9.97	0.00	2.393	2.17	0.00	0.0	100.0	0.0	-0.75	0.53	0.87	5.76	3.0	0.005	0.51	0.0	0.05	15.75	0.00	2.533	4.78	3.91	2.1	97.9	0.0	-1.36	1.03	0.56	0.88	5.63	2260	310	10	0	0	0	0	logfile
✔	8DLR	27512	2025-02-11	2022-07-08	2.51	3.02	2.49	2.9	0.006	0.81	0.0	0.06	12.71	0.01	2.291	3.79	0.00	2.6	97.4	0.0	-0.80	0.72	0.84	5.48	2.9	0.004	0.59	0.0	0.04	14.44	0.00	2.413	5.18	1.38	3.2	96.8	0.0	-0.31	0.37	0.72	0.86	4.99	4027	505	4	0	6	0	0	logfile
✔	7THE	25893	2025-02-11	2022-01-10	3.87	4.06	3.94	4.0	0.013	1.88	0.0	0.11	13.76	0.02	2.548	0.15	0.00	8.2	91.8	0.0	-2.01	0.67	0.75	3.24	4.0	0.003	0.74	0.0	0.04	15.95	0.00	2.490	11.42	3.60	5.8	94.2	0.0	-1.06	0.70	0.67	0.75	2.74	3305	423	4	0	1	0	0	logfile
✔	8DM0	27522	2025-02-10	2022-07-08	3.21	3.62	3.12	3.5	0.006	1.01	0.0	0.06	12.72	0.01	2.288	0.83	0.00	3.5	96.5	0.0	-1.78	0.59	0.80	3.29	3.6	0.003	0.64	0.0	0.04	14.89	0.00	2.567	7.44	2.62	3.5	96.5	0.0	-0.89	0.45	0.60	0.82	2.53	2480	314	3	0	1	0	0	logfile
✔	6EBM	9026	2025-02-13	2018-08-06	4.0	4.06	—	3.9	0.012	1.10	0.0	0.06	9.31	0.01	2.049	5.25	0.00	5.4	94.6	0.0	-4.86	0.66	0.79	—	3.8	0.005	0.91	0.0	0.05	14.83	0.00	2.418	15.33	3.89	4.6	95.4	0.0	0.97	0.93	0.66	0.81	—	8532	1192	4	0	0	0	0	logfile
✔	8F6i	28884	2025-02-14	2022-11-16	4.03	4.27	4.04	4.2	0.002	0.50	0.0	0.04	13.67	0.00	2.070	7.30	0.00	5.0	94.9	0.2	0.18	0.76	0.80	—	4.2	0.003	0.65	0.0	0.04	13.88	0.00	1.992	9.29	0.09	6.0	94.0	0.0	0.18	0.46	0.77	0.81	—	10367	1351	8	0	6	0	0	logfile
✔	7MJL	23877	2025-02-11	2021-04-20	2.95	3.62	—	3.3	0.005	0.82	0.0	0.05	12.25	0.01	2.351	2.77	0.00	3.9	96.1	0.0	-0.85	0.80	0.87	3.95	3.3	0.004	0.60	0.0	0.04	14.80	0.00	2.397	5.00	1.88	2.9	97.1	0.0	0.22	1.08	0.80	0.88	3.56	4788	621	4	0	1	0	0	logfile
✔	7MDW	23782	2025-02-11	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.55	0.0	0.04	12.68	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.002	0.55	0.0	0.04	14.41	0.00	2.417	8.46	1.69	7.2	92.8	0.0	-2.38	1.31	0.54	0.47	1.90	3392	435	4	0	1	0	0	logfile

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