Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CH1	30368	2025-02-14	2020-07-03	2.6	2.70	—	2.8	0.007	0.87	0.0	0.06	15.52	0.01	2.218	3.39	6.10	4.3	95.6	0.2	-5.35	0.66	0.86	3.92	2.7	0.003	0.60	0.0	0.04	14.67	0.00	2.287	3.39	1.02	3.4	96.6	0.0	2.05	1.21	0.68	0.88	2.86	9948	1280	6	0	6	76	0	logfile
✔	7W0M	32244	2025-02-14	2021-11-18	3.71	2.51	3.74	2.2	0.004	0.76	0.0	0.05	14.11	0.00	2.230	11.46	0.00	5.6	94.4	0.0	-1.90	0.73	0.74	2.42	2.2	0.003	0.70	0.0	0.04	16.73	0.00	2.481	8.41	2.89	6.0	94.0	0.0	-1.15	0.95	0.74	0.74	1.91	8929	1134	6	0	1	0	0	logfile
✔	7V0M	26944	2025-02-11	2022-05-10	2.7	2.46	2.64	2.5	0.003	0.56	0.0	0.04	18.10	0.00	2.240	3.55	1.29	3.3	96.7	0.0	0.52	0.56	0.89	4.90	2.5	0.002	0.46	0.0	0.04	18.28	0.00	2.636	5.06	2.07	4.0	96.0	0.0	2.15	0.49	0.54	0.88	4.21	3724	483	4	0	0	60	0	logfile
✔	7CN1	30413	2025-02-11	2020-07-29	3.7	3.74	—	3.7	0.008	0.78	0.0	0.05	13.72	0.00	2.147	16.07	0.32	10.2	89.8	0.0	-3.65	0.47	0.79	1.71	3.7	0.003	0.63	0.0	0.04	15.35	0.00	2.580	8.79	2.90	4.4	95.6	0.0	0.18	0.56	0.48	0.77	1.73	6290	822	6	0	3	0	0	logfile
✔	7RMH	24570	2025-02-12	2021-07-27	3.1	4.02	3.03	3.9	0.004	0.75	0.0	0.05	13.42	0.01	2.290	2.56	0.00	4.1	95.9	0.0	-1.32	0.74	0.80	2.69	3.9	0.002	0.54	0.0	0.04	15.05	0.00	2.457	4.29	1.38	3.0	96.9	0.1	0.95	0.55	0.66	0.78	2.19	7434	986	7	0	1	0	0	logfile
✔	7UN6	26614	2025-02-13	2022-04-09	3.3	3.43	3.19	3.6	0.004	0.60	0.0	0.04	13.87	0.00	1.879	11.49	0.00	5.0	95.0	0.0	-0.89	0.49	0.57	2.11	3.6	0.004	0.65	0.0	0.04	16.40	0.00	2.397	11.38	3.17	4.9	95.1	0.0	-0.20	0.63	0.58	0.70	1.73	9042	1118	3	0	0	0	0	logfile
✔	8HiK	34819	2025-02-12	2022-11-20	3.72	2.46	3.76	3.2	0.005	0.82	0.0	0.05	9.57	0.01	2.282	4.81	0.00	5.3	94.7	0.0	-3.54	0.66	0.63	1.53	2.2	0.004	0.76	0.0	0.04	14.49	0.01	2.418	12.85	2.13	6.7	93.3	0.0	-1.02	0.77	0.69	0.67	1.81	8238	1055	5	0	1	0	0	logfile
✔	7WoP	32654	2025-02-11	2022-01-22	3.51	2.51	—	3.4	0.002	0.54	0.0	0.04	10.83	0.00	2.203	10.97	9.21	11.4	88.6	0.0	-4.81	0.64	0.66	1.96	3.4	0.004	0.76	0.0	0.05	14.77	0.00	2.429	14.20	5.05	15.3	84.7	0.0	-3.44	1.28	0.64	0.68	2.33	5107	669	3	0	0	0	0	logfile
✔	6VWK	21419	2025-02-12	2020-02-20	3.3	3.56	—	3.5	0.010	1.30	4.0	0.07	12.71	0.01	2.355	0.98	0.59	0.9	99.1	0.0	-0.35	0.65	0.83	2.71	3.5	0.004	0.67	0.0	0.04	15.22	0.00	2.514	6.44	1.77	2.1	97.9	0.0	3.35	1.20	0.64	0.84	1.32	8423	1133	13	0	0	0	0	logfile
✔	7SHK	25127	2025-02-14	2021-10-09	3.1	3.83	—	3.7	0.005	0.82	4.0	0.05	14.18	0.01	2.199	12.41	0.25	4.0	96.0	0.0	-0.23	0.82	0.76	1.56	3.7	0.003	0.71	0.0	0.04	15.91	0.00	2.348	10.69	1.70	3.6	96.4	0.0	0.20	0.54	0.81	0.78	1.56	10485	1299	7	0	4	0	0	logfile
✔	6N2D	9327	2025-02-12	2018-11-12	3.3	3.50	3.29	3.6	0.008	1.21	0.0	0.07	11.75	0.01	1.610	14.18	0.71	2.6	97.4	0.0	-2.81	0.61	0.78	1.68	3.5	0.005	0.80	0.0	0.05	16.28	0.01	2.507	17.91	7.77	1.7	98.3	0.0	1.99	0.61	0.62	0.81	1.33	7162	993	13	0	0	0	0	logfile
✔	6M4o	30080	2025-02-13	2020-03-08	3.4	3.64	—	3.6	0.007	1.14	0.0	0.06	11.53	0.01	2.203	4.58	1.15	11.4	88.4	0.2	-5.81	0.66	0.81	3.38	3.6	0.003	0.74	0.0	0.04	15.33	0.00	2.514	7.54	2.20	8.2	91.8	0.0	-1.59	1.35	0.67	0.82	2.10	8918	1127	6	0	1	0	0	logfile
✔	7XiZ	33213	2025-02-10	2022-04-14	3.74	3.27	3.81	3.1	0.013	1.11	0.0	0.06	19.02	0.01	2.386	4.94	0.00	12.8	86.4	0.8	-3.37	0.35	0.71	1.78	3.1	0.003	0.81	0.0	0.05	18.48	0.01	2.549	7.52	5.96	15.5	83.8	0.8	-3.51	1.53	0.36	0.73	1.71	2161	267	2	0	2	0	0	logfile
✔	6U5H	20646	2025-02-12	2019-08-27	4.0	3.67	—	3.7	0.005	1.07	0.0	0.06	8.74	0.01	2.234	9.36	0.39	13.6	86.4	0.0	-5.23	0.41	0.68	—	3.7	0.004	0.79	0.0	0.05	15.61	0.00	2.561	15.24	3.47	13.0	87.0	0.0	-4.78	0.95	0.42	0.71	—	7326	954	3	0	0	0	0	logfile
✔	6KZP	0792	2025-02-13	2019-09-25	3.1	2.67	—	3.0	0.013	1.45	1.0	0.08	16.07	0.01	2.390	10.39	2.44	3.3	96.4	0.3	-4.53	0.59	0.81	3.72	3.1	0.004	0.68	0.0	0.04	16.29	0.00	2.374	4.99	2.22	2.9	97.1	0.0	1.44	0.68	0.59	0.83	2.54	8557	1014	2	0	18	0	0	logfile
✔	7RMi	24572	2025-02-12	2021-07-27	3.2	3.78	3.15	3.7	0.004	0.84	0.0	0.05	12.68	0.01	2.296	4.36	0.00	3.4	96.6	0.0	-1.03	0.69	0.72	2.32	3.7	0.004	0.60	0.0	0.04	14.46	0.00	2.533	5.87	2.57	3.6	96.4	0.0	1.00	0.97	0.66	0.78	2.38	7205	960	7	0	1	0	0	logfile
✔	7WCo	32426	2025-02-13	2021-12-20	3.8	3.89	—	3.9	0.008	1.13	0.0	0.06	11.02	0.01	0.599	4.59	0.53	14.2	85.8	0.0	-5.43	0.56	0.85	2.78	3.9	0.005	0.79	0.0	0.05	15.17	0.01	2.539	10.61	4.55	10.2	89.8	0.0	-3.05	1.52	0.56	0.86	2.92	8950	1195	15	0	0	0	0	logfile
✔	7LA4	23245	2025-02-12	2021-01-05	3.3	3.51	—	3.5	0.006	0.84	1.0	0.06	16.13	0.00	2.100	16.95	1.91	9.6	89.9	0.5	-4.02	0.75	0.82	3.50	3.5	0.003	0.71	0.0	0.05	16.56	0.00	2.147	11.36	2.81	8.7	91.3	0.0	-2.83	1.11	0.72	0.82	2.71	8281	1052	10	0	17	4	0	logfile
✔	7W7E	32342	2025-02-13	2021-12-04	3.4	3.51	—	3.9	0.006	0.67	2.0	0.05	13.83	0.00	2.120	8.28	0.32	8.8	91.2	0.0	-1.54	0.68	0.82	2.16	3.9	0.003	0.67	0.0	0.04	16.63	0.00	2.123	6.68	3.46	6.6	93.4	0.0	-0.75	0.47	0.68	0.83	1.97	8524	1090	6	0	1	0	0	logfile
✔	8HiJ	34818	2025-02-12	2022-11-20	3.54	2.56	3.51	3.0	0.005	0.76	1.0	0.05	9.66	0.01	2.315	3.83	0.00	5.2	94.8	0.0	-3.81	0.69	0.69	2.24	3.0	0.005	0.74	1.0	0.04	14.04	0.00	2.375	12.48	2.69	5.6	94.4	0.0	-0.35	1.30	0.71	0.72	2.27	8245	1055	5	0	1	0	0	logfile

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