Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5ZBo	6746	2024-04-13	2018-02-12	4.12	4.69	—	4.8	0.001	0.38	0.0	0.04	15.92	0.00	2.148	1.93	0.49	11.1	86.2	2.7	-4.88	0.71	0.60	—	4.1	0.003	0.77	0.0	0.04	13.32	0.00	2.104	19.31	0.00	5.9	94.1	0.0	-2.51	2.96	0.73	0.77	—	89100	10860	60	0	0	0	0	logfile
✔	6X33	22016	2024-04-07	2020-05-21	4.2	4.35	—	4.3	0.001	0.37	0.0	0.03	9.39	0.00	2.304	3.24	0.00	1.9	98.1	0.0	-4.22	0.55	0.69	—	4.3	0.002	0.61	0.0	0.04	11.64	0.00	2.094	8.35	0.08	2.9	97.1	0.0	0.38	0.62	0.58	0.72	—	112372	14796	16	0	1436	0	0	logfile
✔	5oAF	3773	2024-04-10	2017-06-21	4.06	4.15	—	4.1	0.001	0.47	0.0	0.04	9.13	0.00	2.165	12.39	0.28	2.4	97.6	0.0	-2.75	0.69	0.67	—	4.1	0.003	0.74	0.0	0.04	12.91	0.00	2.114	15.64	0.00	5.0	94.9	0.1	-0.93	3.58	0.73	0.74	—	19748	2538	12	0	6	0	0	logfile
✔	7FiJ	31599	2024-04-05	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.3	0.006	0.86	0.0	0.05	12.15	0.00	2.164	13.33	11.25	16.5	83.5	0.0	-1.70	0.74	0.62	0.56	2.72	3061	561	1	0	0	0	0	logfile
✔	7XSK	33425	2024-04-08	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	24.66	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.007	0.69	0.0	0.04	25.95	0.01	1.746	31.76	0.00	0.0	0.0	0.0	—	1.93	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7LH3	23335	2024-04-07	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.71	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.003	0.61	0.0	0.04	10.57	0.00	2.271	9.94	0.00	2.4	97.6	0.0	1.82	1.10	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile
✔	6KS8	0760	2024-04-07	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.86	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.69	0.0	0.04	11.58	0.00	2.091	17.25	0.01	3.7	96.3	0.0	-0.05	1.87	0.81	0.72	—	61943	8120	16	0	0	0	0	logfile
✔	6D00	7782	2024-04-16	2018-04-09	4.0	3.65	—	3.0	0.001	0.45	0.0	0.04	9.42	0.00	2.284	3.91	0.05	6.5	92.8	0.7	-4.95	0.62	0.43	—	3.2	0.004	0.90	0.0	0.05	15.27	0.00	2.032	20.08	2.45	4.2	95.8	0.0	-0.92	1.61	0.83	0.68	—	38328	4824	12	0	12	0	0	logfile
✔	8AA4	15293	2024-04-08	2022-06-29	3.1	3.54	2.92	3.2	0.001	0.41	0.0	0.04	7.46	0.00	2.240	3.52	0.00	2.7	97.2	0.1	0.39	0.73	0.88	4.17	3.2	0.003	0.53	0.0	0.04	10.05	0.00	2.112	4.01	0.20	3.5	96.4	0.1	0.00	0.93	0.73	0.89	3.87	13616	1742	2	0	0	0	0	logfile
✔	6MWQ	9277	2024-04-11	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.004	0.72	0.0	0.04	13.43	0.00	2.123	8.59	2.21	4.3	95.5	0.2	-1.26	1.34	0.78	0.87	1.84	22072	2873	8	0	0	0	0	logfile
✔	6KRE	0757	2024-04-06	2019-08-21	4.45	4.34	—	4.4	0.001	0.39	0.0	0.04	7.11	0.00	2.244	6.04	0.03	4.1	95.8	0.1	-3.50	0.61	0.56	—	4.4	0.003	0.72	0.0	0.04	12.13	0.00	2.074	15.64	0.02	4.4	95.5	0.1	-0.24	1.84	0.68	0.66	—	60321	7922	16	0	0	0	0	logfile
✔	8D9K	27264	2024-04-05	2022-06-10	3.72	4.58	3.85	4.1	0.001	0.37	0.0	0.03	16.35	0.00	2.270	6.46	0.64	1.9	98.1	0.0	1.53	0.89	0.84	2.42	4.1	0.003	0.50	0.0	0.04	17.22	0.00	2.142	11.42	2.14	2.1	97.9	0.0	0.75	0.56	0.90	0.86	1.97	5708	546	3	65	0	0	0	logfile
✔	7WoG	32651	2024-04-05	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.72	0.0	0.04	10.77	0.00	2.076	19.52	0.00	12.4	87.6	0.0	-2.57	0.92	0.54	0.54	—	3362	433	3	0	0	0	0	logfile
✔	6X35	22018	2024-04-06	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.37	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.002	0.61	0.0	0.04	11.41	0.00	2.182	7.29	0.01	2.5	97.5	0.0	1.11	1.69	0.57	0.72	—	111888	14740	16	0	1432	0	0	logfile
✔	6ZGG	11205	2024-04-12	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.83	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.007	0.80	0.0	0.04	11.65	0.00	2.085	13.66	2.60	6.7	93.2	0.0	-1.07	1.43	0.87	0.84	1.14	25096	3207	3	0	0	0	0	logfile
✔	6KRD	0756	2024-04-07	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.80	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.003	0.69	0.0	0.04	12.10	0.00	2.093	12.74	0.00	3.6	96.4	0.1	-0.22	1.82	0.64	0.64	—	61005	8006	16	0	0	0	0	logfile
✔	6KS7	0759	2024-04-07	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.72	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.003	0.73	0.0	0.04	12.16	0.00	2.062	17.17	0.03	4.1	95.8	0.1	-0.34	1.89	0.75	0.69	—	62022	8131	16	0	0	0	0	logfile
✔	8HiA	34813	2024-04-06	2022-11-19	4.9	4.49	2.13	9.6	0.001	0.36	0.0	0.05	15.83	0.00	2.251	1.11	2.86	12.1	87.6	0.2	-4.39	0.47	0.07	—	9.4	0.009	0.98	0.0	0.05	15.73	0.01	2.082	32.36	4.76	19.0	81.0	0.0	-5.53	12.59	0.68	0.24	—	7200	460	20	0	0	0	3660	logfile
✔	7T4M	25680	2024-04-16	2021-12-10	2.48	2.77	2.55	2.7	0.001	0.38	0.0	0.04	9.69	0.00	2.253	4.85	0.97	1.6	98.4	0.0	1.34	0.72	0.86	4.48	2.7	0.003	0.61	1.0	0.04	12.70	0.00	1.631	6.06	1.11	1.2	98.8	0.0	1.43	0.89	0.73	0.88	4.22	39054	4854	12	0	0	0	0	logfile
✔	7XMR	33302	2024-04-06	2022-04-26	3.1	3.31	2.93	3.3	0.001	0.40	0.0	0.04	10.86	0.00	2.250	5.63	0.00	1.6	98.4	0.0	-3.39	0.52	0.64	1.08	3.3	0.003	0.65	0.0	0.04	14.38	0.00	2.112	11.80	2.73	3.6	96.4	0.0	0.22	0.64	0.59	0.74	1.47	6611	871	5	0	0	0	0	logfile

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