Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oT4	17168	2024-04-05	2023-04-20	2.97	3.23	2.90	3.5	0.012	2.30	0.0	0.13	15.19	0.01	2.527	0.00	0.00	0.0	100.0	0.0	-3.85	0.61	0.76	5.14	3.5	0.005	0.78	0.0	0.05	18.07	0.00	2.196	10.16	2.01	2.9	97.1	0.0	-2.66	1.32	0.59	0.79	4.32	3444	444	12	0	0	0	0	logfile
✔	8UYo	42812	2024-04-13	2023-11-13	3.3	2.91	3.29	3.3	0.012	1.63	0.0	0.07	14.38	0.02	2.319	0.00	0.62	2.8	97.2	0.0	-3.30	0.58	0.58	0.15	2.9	0.003	0.65	0.0	0.04	17.92	0.00	2.138	6.96	2.20	1.7	98.3	0.0	0.75	1.25	0.68	0.75	1.03	89580	10980	60	0	0	0	0	logfile
✔	8Q98	18271	2024-04-06	2023-08-20	1.75	1.75	1.77	1.8	0.011	1.66	0.0	0.07	9.83	0.01	2.543	0.00	0.00	0.5	99.5	0.0	-0.80	0.22	0.65	8.64	1.8	0.002	0.49	0.0	0.05	13.57	0.00	2.336	2.28	0.51	0.2	99.8	0.0	-0.44	0.91	0.43	0.90	7.94	7032	450	6	0	0	0	3588	logfile
✔	8Ci8	16671	2024-04-05	2023-02-09	2.67	2.61	2.27	2.7	0.009	1.46	0.0	0.08	13.63	0.01	2.521	0.00	0.00	0.0	100.0	0.0	-4.96	0.64	0.83	3.28	2.7	0.004	0.61	0.0	0.04	16.52	0.00	2.091	9.36	8.00	1.4	98.6	0.0	-3.06	1.20	0.65	0.86	5.00	3430	485	25	0	0	0	0	logfile
✔	8Q9B	18275	2024-04-06	2023-08-20	3.1	3.13	2.97	3.1	0.011	1.79	0.0	0.08	10.91	0.01	2.521	0.00	0.00	4.1	95.9	0.0	-1.61	0.35	0.78	6.63	3.1	0.002	0.48	0.0	0.05	14.65	0.00	2.367	1.57	1.52	0.2	99.8	0.0	-0.77	1.30	0.38	0.86	6.29	7032	450	6	0	0	0	3588	logfile
✔	8oT3	17167	2024-04-05	2023-04-20	2.73	3.21	2.60	3.2	0.014	2.33	0.0	0.13	16.88	0.01	2.559	0.00	0.00	0.0	100.0	0.0	-3.27	0.52	0.76	7.19	3.2	0.004	0.82	0.0	0.05	16.37	0.00	2.121	7.45	3.57	3.8	96.2	0.0	-3.57	1.86	0.42	0.79	7.38	2460	336	12	0	0	0	0	logfile
✔	8Q9D	18277	2024-04-06	2023-08-20	3.16	2.76	3.06	3.1	0.011	1.80	0.0	0.08	9.92	0.01	2.504	0.00	0.00	5.0	95.0	0.0	-1.95	0.30	0.76	6.33	3.1	0.002	0.51	0.0	0.05	14.39	0.00	2.195	2.42	1.52	1.1	98.9	0.0	-0.87	1.29	0.36	0.85	5.81	7032	450	6	0	0	0	3588	logfile
✔	8Q8Y	18265	2024-04-06	2023-08-19	2.88	2.50	2.59	2.7	0.011	1.89	4.0	0.11	12.93	0.01	2.516	0.00	0.00	2.3	97.7	0.0	-1.68	0.26	0.75	5.62	2.7	0.002	0.53	0.0	0.05	17.29	0.00	2.053	2.18	1.55	1.9	98.1	0.0	-1.41	1.19	0.35	0.88	5.17	6896	441	6	0	0	0	3521	logfile
✔	8Q8R	18258	2024-04-05	2023-08-18	2.1	1.89	2.15	1.9	0.011	1.82	6.0	0.10	11.11	0.01	2.505	0.00	0.00	11.0	89.0	0.0	-1.41	0.39	0.83	5.91	1.9	0.007	0.86	0.0	0.06	16.75	0.00	2.274	4.81	6.06	8.6	91.4	0.0	-1.70	2.41	0.46	0.88	6.08	3468	456	6	0	0	0	0	logfile
✔	8Q97	18270	2024-04-06	2023-08-20	2.99	3.09	2.91	3.1	0.011	2.02	0.0	0.10	12.24	0.01	2.490	0.00	0.00	0.7	99.3	0.0	-2.45	0.41	0.79	4.66	3.1	0.003	0.72	0.0	0.05	16.25	0.00	2.462	1.36	0.00	1.4	98.6	0.0	-1.28	0.94	0.40	0.82	3.71	6642	426	6	0	0	0	3396	logfile
✔	8Q8W	18263	2024-04-06	2023-08-19	2.85	2.92	2.74	2.9	0.011	1.75	0.0	0.09	11.10	0.01	2.483	0.00	0.00	2.9	97.1	0.0	-1.38	0.29	0.78	6.35	2.9	0.002	0.47	0.0	0.05	15.76	0.00	2.331	0.91	0.54	0.7	99.3	0.0	-0.61	1.98	0.39	0.89	6.58	6618	429	6	0	0	0	3372	logfile
✔	8Q8M	18255	2024-04-06	2023-08-18	2.95	3.13	2.89	3.1	0.011	1.96	7.0	0.12	11.82	0.01	2.510	0.00	0.00	7.4	92.6	0.0	-1.64	0.40	0.85	5.71	3.1	0.003	0.60	0.0	0.05	15.27	0.00	2.059	2.83	0.51	4.3	95.7	0.0	-1.60	1.09	0.41	0.87	5.85	7074	456	6	0	0	0	3606	logfile
✔	8Q9H	18281	2024-04-06	2023-08-20	2.18	2.03	2.10	2.2	0.011	1.73	0.0	0.08	10.93	0.01	2.517	0.00	0.00	2.8	97.2	0.0	-1.19	0.33	0.77	6.36	2.2	0.002	0.54	0.0	0.05	16.15	0.00	2.065	1.47	0.26	1.9	98.1	0.0	-1.45	1.80	0.41	0.86	6.16	6822	438	6	0	0	0	3480	logfile
✔	8Q8F	18253	2024-04-05	2023-08-18	2.93	2.97	2.77	3.0	0.011	1.82	0.0	0.08	12.08	0.01	2.504	0.00	0.76	5.4	94.6	0.0	-1.60	0.37	0.78	6.53	3.0	0.007	0.79	0.0	0.05	16.93	0.00	2.186	4.95	3.79	3.6	96.4	0.0	-2.12	3.80	0.42	0.91	4.91	3468	456	6	0	0	0	0	logfile
✔	8Q8Z	18266	2024-04-06	2023-08-19	3.16	3.15	3.34	3.2	0.011	1.88	0.0	0.08	10.80	0.01	2.522	0.00	0.00	4.6	95.4	0.0	-2.15	0.29	0.75	6.08	3.2	0.003	0.52	0.0	0.05	13.80	0.00	2.011	4.41	0.25	1.1	98.9	0.0	-1.26	2.96	0.33	0.85	5.45	7032	450	6	0	0	0	3588	logfile
✔	8Q8X	18264	2024-04-05	2023-08-19	2.54	2.40	2.39	2.5	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.5	97.5	0.0	-1.63	0.27	0.77	6.72	2.4	0.005	0.65	0.0	0.05	16.11	0.00	2.244	3.57	1.53	2.3	97.7	0.0	-1.95	0.91	0.37	0.91	6.88	3435	453	6	0	0	0	0	logfile
✔	8Q9C	18276	2024-04-05	2023-08-20	3.4	3.58	3.33	3.5	0.011	1.96	1.0	0.09	9.22	0.01	2.524	0.00	0.00	5.9	94.1	0.0	-2.98	0.33	0.78	5.62	3.5	0.003	0.71	0.0	0.05	14.44	0.00	2.184	6.55	3.03	1.1	98.9	0.0	-2.09	2.73	0.34	0.84	5.10	3444	450	6	0	0	0	0	logfile
✔	8Q9A	18273	2024-04-06	2023-08-20	3.04	3.03	3.02	3.2	0.011	1.80	1.0	0.09	13.06	0.01	2.499	0.00	0.75	2.9	97.1	0.0	-1.88	0.32	0.78	5.56	3.1	0.003	0.54	0.0	0.05	14.84	0.00	2.006	3.64	2.01	2.0	98.0	0.0	-1.30	2.80	0.37	0.87	5.76	7140	462	6	0	0	0	3633	logfile
✔	8Q8U	18261	2024-04-06	2023-08-18	3.3	3.53	3.24	3.8	0.011	1.97	3.0	0.11	12.59	0.01	2.505	0.00	0.00	6.3	93.7	0.0	-3.01	0.42	0.76	3.25	3.8	0.003	0.60	0.0	0.05	13.45	0.00	2.010	5.44	0.54	4.6	95.4	0.0	-2.14	1.35	0.45	0.77	2.83	6642	426	6	0	0	0	3396	logfile
✔	7JV2	22491	2024-04-05	2020-08-20	3.5	3.49	3.41	3.7	0.015	1.39	0.0	0.08	11.43	0.01	2.587	0.00	1.32	3.6	96.4	0.0	0.82	0.69	0.74	3.48	3.7	0.004	0.76	0.0	0.04	15.55	0.00	2.199	13.80	5.73	6.6	93.4	0.0	-1.13	1.28	0.70	0.77	3.87	2151	282	3	0	0	0	0	logfile

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