Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZH6	14725	2024-04-05	2022-04-05	3.67	4.10	0.95	4.2	0.006	0.90	0.0	0.06	15.91	0.01	1.607	26.36	1.26	6.4	93.6	0.0	0.99	0.54	0.73	1.36	4.2	0.004	0.71	0.0	0.04	16.90	0.00	2.203	15.14	6.80	6.4	93.6	0.0	1.06	1.11	0.54	0.75	1.16	3771	478	1	0	1	0	0	logfile
✔	8XCS	38253	2024-04-05	2023-12-10	2.63	2.77	1.03	2.7	0.009	1.10	0.0	0.06	16.41	0.01	2.381	7.66	4.69	3.8	96.2	0.0	0.58	0.47	0.89	4.80	2.7	0.004	0.55	0.0	0.04	16.47	0.00	2.262	4.36	1.17	2.2	97.8	0.0	1.28	0.88	0.50	0.93	5.61	3360	418	2	0	3	20	0	logfile
✔	8XCY	38259	2024-04-05	2023-12-10	2.91	3.04	1.04	3.0	0.008	0.83	0.0	0.05	17.01	0.00	2.241	6.53	3.56	3.1	96.9	0.0	0.91	0.43	0.86	3.94	3.0	0.003	0.53	0.0	0.04	16.86	0.00	2.254	5.47	1.19	3.6	96.4	0.0	1.35	0.59	0.44	0.90	4.28	3311	416	2	0	2	8	0	logfile
✔	8XD6	38267	2024-04-05	2023-12-10	2.79	2.93	1.04	2.9	0.009	1.12	0.0	0.06	16.23	0.01	2.369	7.03	3.51	3.4	96.6	0.0	0.89	0.48	0.90	4.52	2.9	0.015	1.12	1.0	0.04	16.59	0.01	0.945	8.37	1.46	1.7	98.3	0.0	1.45	0.41	0.48	0.93	4.61	3402	419	2	0	4	44	0	logfile
✔	8XCX	38258	2024-04-05	2023-12-10	2.83	3.04	1.04	3.0	0.008	0.84	0.0	0.05	16.53	0.01	2.405	6.53	2.96	2.9	97.1	0.0	1.08	0.44	0.88	4.21	3.0	0.003	0.49	0.0	0.04	16.75	0.00	2.260	6.37	1.18	2.7	97.3	0.0	1.68	1.13	0.41	0.89	3.60	3329	416	2	0	2	25	0	logfile
✔	8XD1	38262	2024-04-05	2023-12-10	2.96	3.13	1.04	3.1	0.007	0.83	0.0	0.05	18.20	0.01	2.373	6.23	6.49	3.6	96.4	0.0	0.90	0.42	0.85	3.48	3.1	0.002	0.52	0.0	0.04	17.14	0.00	2.145	6.23	0.88	2.9	97.1	0.0	1.45	0.47	0.42	0.88	3.19	3307	416	2	0	1	9	0	logfile
✔	8XCZ	38260	2024-04-05	2023-12-10	2.83	3.03	1.04	3.0	0.007	0.74	0.0	0.05	17.16	0.01	2.428	5.92	3.85	3.6	96.4	0.0	1.41	0.43	0.88	4.78	3.0	0.004	0.51	0.0	0.04	17.29	0.00	2.214	5.16	1.78	2.7	97.3	0.0	1.62	0.35	0.43	0.91	3.87	3324	416	2	0	2	17	0	logfile
✔	8XCU	38255	2024-04-05	2023-12-10	2.83	3.05	1.05	3.0	0.009	1.11	0.0	0.06	16.31	0.01	2.476	4.65	5.00	2.2	97.8	0.0	1.25	0.45	0.87	4.12	3.0	0.003	0.54	0.0	0.04	16.45	0.00	2.242	7.50	0.29	3.9	95.9	0.2	1.64	0.62	0.46	0.91	4.05	3370	417	2	0	3	20	0	logfile
✔	8XD5	38266	2024-04-05	2023-12-10	2.75	2.93	1.08	2.9	0.005	0.73	0.0	0.05	16.88	0.00	2.447	6.29	3.80	3.4	96.6	0.0	0.89	0.49	0.90	5.03	2.8	0.003	0.50	0.0	0.04	16.49	0.00	2.242	5.09	0.88	1.7	98.3	0.0	1.68	1.00	0.48	0.93	4.85	3378	419	2	0	2	31	0	logfile
✔	8iJD	35485	2024-04-06	2023-02-27	3.25	3.91	1.15	3.7	0.008	1.20	10.0	0.07	16.92	0.01	1.812	17.05	2.30	5.8	94.2	0.0	-0.43	0.69	0.82	1.82	3.7	0.003	0.73	0.0	0.04	16.95	0.00	2.140	14.94	3.94	5.0	94.9	0.1	0.14	0.40	0.71	0.86	1.56	8724	1136	6	0	1	0	0	logfile
✔	8SPB	40678	2024-04-06	2023-05-02	3.2	3.73	1.22	3.6	0.003	0.73	0.0	0.05	17.30	0.00	2.227	10.41	1.18	6.9	93.1	0.0	-1.37	0.55	0.77	1.49	3.6	0.003	0.65	0.0	0.04	18.02	0.00	2.118	13.18	4.74	6.7	93.2	0.1	-1.20	0.99	0.48	0.75	0.99	6726	828	6	0	0	0	0	logfile
✔	8iJ3	35463	2024-04-06	2023-02-24	3.28	3.69	1.23	3.6	0.004	1.08	12.0	0.08	17.30	0.01	2.107	7.58	1.71	5.2	94.8	0.0	-0.17	0.71	0.86	2.48	3.6	0.004	0.63	0.0	0.04	17.64	0.00	2.112	6.65	4.92	5.1	94.8	0.1	0.23	0.28	0.73	0.87	2.60	8772	1134	5	0	0	0	0	logfile
✔	8XD3	38264	2024-04-05	2023-12-10	2.87	3.06	1.34	3.0	0.007	0.82	0.0	0.05	17.44	0.00	2.325	5.57	3.81	3.4	96.6	0.0	1.29	0.48	0.88	3.57	3.0	0.004	0.55	0.0	0.04	17.41	0.00	2.185	6.48	2.05	2.9	96.9	0.2	1.48	0.44	0.46	0.90	3.34	3342	418	2	0	2	11	0	logfile
✔	8XD0	38261	2024-04-05	2023-12-10	2.83	3.06	1.35	3.0	0.009	1.13	0.0	0.07	16.46	0.01	2.449	4.66	2.35	3.1	96.9	0.0	1.32	0.46	0.88	3.52	3.0	0.004	0.54	0.0	0.04	17.71	0.00	2.198	5.71	2.35	2.9	96.9	0.2	1.84	0.36	0.46	0.91	3.35	3357	417	2	0	2	14	0	logfile
✔	8XCW	38257	2024-04-05	2023-12-10	2.87	3.04	1.36	3.0	0.009	1.10	0.0	0.06	16.21	0.01	2.363	4.68	3.54	2.2	97.8	0.0	1.28	0.49	0.89	4.44	3.0	0.004	0.51	0.0	0.04	16.81	0.00	2.215	6.94	2.95	2.4	97.6	0.0	2.00	0.42	0.49	0.92	3.47	3347	416	2	0	2	17	0	logfile
✔	7YAT	33719	2024-04-05	2022-06-28	2.2	2.33	1.39	2.3	0.009	1.06	0.0	0.06	14.84	0.00	2.267	9.86	0.00	4.3	95.7	0.0	-4.79	0.61	0.88	7.98	2.3	0.005	0.90	0.0	0.05	15.44	0.00	2.233	10.36	1.56	4.5	95.5	0.0	-4.89	0.34	0.65	0.92	7.27	4129	600	45	0	0	25	0	logfile
✔	8oL5	16949	2024-04-05	2023-03-30	3.4	3.10	1.47	3.0	0.003	0.44	0.0	0.06	9.97	0.00	2.393	2.17	0.00	0.0	100.0	0.0	-0.75	0.53	0.87	5.76	3.0	0.002	0.37	0.0	0.05	15.49	0.00	2.326	3.70	3.91	2.1	97.9	0.0	-1.20	1.02	0.55	0.88	5.14	2260	310	10	0	0	0	0	logfile
✔	7UUZ	26807	2024-04-05	2022-04-29	3.2	3.25	1.51	3.2	0.006	0.57	0.0	0.04	13.54	0.00	2.186	5.97	0.51	5.9	94.1	0.0	1.14	0.62	0.78	2.69	3.2	0.004	0.66	0.0	0.04	15.14	0.00	2.132	10.26	2.04	5.1	94.9	0.0	1.19	1.11	0.61	0.79	1.92	3786	501	1	0	3	0	0	logfile
✔	8BDZ	15995	2024-04-05	2022-10-20	3.13	3.37	1.52	3.1	0.002	0.52	0.0	0.04	12.41	0.00	2.264	6.23	0.00	3.0	97.0	0.0	2.26	0.48	0.84	2.77	3.1	0.003	0.56	0.0	0.04	14.26	0.00	2.204	9.12	1.64	1.7	98.3	0.0	3.02	0.42	0.49	0.86	2.82	3309	414	3	0	0	0	0	logfile
✔	8oL2	16942	2024-04-05	2023-03-30	3.0	3.17	1.54	3.3	0.004	0.45	0.0	0.05	9.08	0.00	2.275	10.00	4.35	3.4	96.6	0.0	-2.34	0.48	0.91	5.22	3.3	0.007	0.72	0.0	0.06	15.45	0.00	2.361	5.65	9.13	8.6	87.9	3.4	-3.19	0.46	0.43	0.90	5.94	2260	310	10	0	0	0	0	logfile

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