Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A6A	11668	2024-04-12	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.68	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.003	0.58	0.0	0.04	14.97	0.00	2.193	3.34	1.82	1.8	98.2	0.0	4.63	0.40	0.69	0.82	8.90	41613	4152	72	0	32	4621	0	logfile
✔	7N5D	24186	2024-04-10	2021-06-05	2.8	2.25	—	1.3	0.023	1.52	0.0	0.09	9.91	0.01	2.378	0.32	0.00	1.1	98.9	0.0	1.83	0.84	0.83	4.14	1.3	0.003	0.60	0.0	0.04	16.13	0.00	2.208	6.93	2.87	1.9	98.1	0.0	2.55	0.64	0.82	0.83	3.12	20593	2612	14	0	7	0	0	logfile
✔	7oTo	13063	2024-04-07	2021-06-10	3.4	2.27	—	1.3	0.013	1.84	0.0	0.11	15.72	0.01	1.799	3.86	0.00	1.5	98.5	0.0	2.59	0.76	0.74	1.63	1.4	0.003	0.61	0.0	0.04	17.27	0.00	1.939	7.96	2.77	2.6	97.3	0.1	1.25	0.69	0.80	0.78	1.77	10333	1313	4	0	4	0	0	logfile
✔	7A6B	11669	2024-04-12	2020-08-25	1.33	1.21	—	1.3	0.015	1.60	24.0	0.12	16.78	0.01	1.893	4.97	4.17	1.2	98.8	0.0	2.52	0.52	0.65	9.13	1.3	0.002	0.60	0.0	0.04	14.49	0.00	2.224	2.85	1.79	1.8	98.2	0.0	4.85	0.38	0.75	0.86	9.05	41494	4152	72	0	32	3854	0	logfile
✔	8R5o	18935	2024-04-05	2023-11-17	2.49	2.13	—	1.4	0.002	0.45	0.0	0.04	11.77	0.00	2.042	4.11	0.44	2.7	97.2	0.0	0.35	0.83	0.86	5.83	1.4	0.005	0.60	0.0	0.05	15.23	0.01	1.988	5.46	1.32	3.2	96.8	0.0	0.79	0.68	0.84	0.87	5.50	54473	6680	41	0	3	255	0	logfile
✔	7T2G	25612	2024-04-06	2021-12-04	2.5	1.71	—	1.4	0.007	0.88	0.0	0.05	12.03	0.01	2.214	13.39	1.00	3.5	96.5	0.0	0.61	0.80	0.81	5.15	1.4	0.003	0.57	0.0	0.04	14.59	0.00	2.145	11.70	2.00	2.1	97.9	0.0	0.68	0.37	0.80	0.81	4.59	6922	898	4	0	3	8	0	logfile
✔	8JFK	36212	2024-04-12	2023-05-18	2.9	2.21	3.14	1.4	0.007	1.25	18.0	0.06	17.18	0.01	1.745	22.22	2.29	2.5	97.5	0.0	-0.34	0.68	0.69	1.41	1.3	0.005	0.85	0.0	0.05	17.84	0.01	2.077	20.90	4.32	3.4	96.6	0.0	-0.25	1.22	0.70	0.71	1.47	81428	10140	24	0	8	0	0	logfile
✔	7RRP	24665	2024-04-10	2021-08-10	1.27	1.32	—	1.4	0.003	0.61	0.0	0.04	14.22	0.00	2.007	2.86	0.00	2.4	97.6	0.0	4.01	0.63	0.76	9.05	1.4	0.004	0.66	0.0	0.04	14.32	0.00	2.044	2.00	0.61	1.8	98.2	0.0	3.97	0.06	0.70	0.83	9.05	72254	4128	72	0	278	2496	34080	logfile
✔	8CTE	26988	2024-04-16	2022-05-14	2.9	1.86	2.80	1.5	0.003	0.53	1.0	0.04	11.90	0.00	2.214	5.55	2.34	1.6	98.3	0.1	2.02	0.78	0.75	3.53	1.4	0.004	0.57	0.0	0.04	14.62	0.00	2.070	7.41	1.85	2.0	98.0	0.1	1.82	0.56	0.82	0.81	3.86	38844	4984	21	0	16	0	0	logfile
✔	8TXR	41704	2024-04-10	2023-08-24	3.8	3.13	—	1.5	0.004	0.46	0.0	0.04	11.55	0.00	1.930	3.65	0.59	1.8	98.2	0.0	0.92	0.88	0.81	1.44	1.6	0.003	0.72	0.0	0.04	16.76	0.00	2.117	9.92	1.61	1.8	98.2	0.0	2.84	1.35	0.89	0.82	0.57	19020	2388	20	0	0	0	0	logfile
✔	7M4Y	23670	2024-04-13	2021-03-22	2.5	1.72	—	1.5	0.006	0.58	2.0	0.03	23.65	0.02	1.783	3.47	2.14	2.5	97.3	0.2	1.41	0.77	0.73	3.74	1.5	0.004	0.73	0.0	0.04	23.26	0.01	1.694	4.89	2.97	2.9	97.0	0.1	0.55	0.29	0.79	0.77	3.74	139817	5511	80	4453	200	1044	0	logfile
✔	7MDW	23782	2024-04-05	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.55	0.0	0.04	12.68	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.004	0.69	0.0	0.05	15.11	0.00	2.199	17.53	3.10	11.7	88.3	0.0	-2.94	1.34	0.56	0.49	1.65	3392	435	4	0	1	0	0	logfile
✔	8JAF	36126	2024-04-05	2023-05-05	3.1	2.18	3.07	1.5	0.008	0.97	0.0	0.05	12.50	0.01	2.237	17.42	0.87	7.3	92.7	0.0	-2.04	0.64	0.56	4.02	1.9	0.004	0.69	0.0	0.04	13.15	0.01	2.231	14.27	2.91	5.6	94.4	0.0	-1.42	0.46	0.66	0.58	2.61	3862	549	4	0	0	0	0	logfile
✔	8EZJ	28743	2024-04-11	2022-11-01	3.3	2.34	—	1.5	0.004	0.55	0.0	0.04	11.20	0.00	2.195	10.74	0.23	8.6	91.4	0.0	0.57	0.75	0.77	1.96	1.9	0.003	0.63	0.0	0.04	14.82	0.00	2.132	11.13	2.44	7.6	92.3	0.0	0.42	0.38	0.75	0.76	1.74	23215	2891	6	0	2	0	0	logfile
✔	8P39	17385	2024-04-07	2023-05-17	2.58	2.12	2.56	1.5	0.007	0.63	0.0	0.04	12.57	0.00	1.951	9.53	5.43	5.6	94.1	0.3	-1.34	0.71	0.64	3.31	1.5	0.004	0.70	0.0	0.05	15.19	0.00	1.917	12.83	3.88	7.5	92.3	0.3	-1.19	1.00	0.71	0.65	2.69	9705	1200	4	0	6	0	0	logfile
✔	8iKJ	35514	2024-04-05	2023-02-28	3.2	2.32	—	1.5	0.005	0.70	0.0	0.08	12.44	0.01	2.162	5.92	0.00	3.0	97.0	0.0	1.60	0.77	0.75	2.35	1.4	0.005	0.75	0.0	0.04	13.85	0.01	2.158	10.89	1.54	3.4	96.6	0.0	1.48	1.06	0.80	0.79	2.21	4200	532	2	0	3	0	0	logfile
✔	7UDS	26458	2024-04-09	2022-03-20	3.1	2.25	3.26	1.5	0.005	0.74	0.0	0.05	17.29	0.00	2.015	10.59	0.00	4.8	95.2	0.0	-0.23	0.73	0.69	2.60	1.5	0.003	0.65	0.0	0.04	15.40	0.00	2.114	10.50	2.98	4.0	96.0	0.0	-0.21	1.13	0.74	0.71	2.36	17032	2094	32	0	53	0	0	logfile
✔	7USM	26739	2024-04-08	2022-04-25	2.7	2.25	—	1.5	0.003	0.63	0.0	0.04	12.83	0.01	2.109	6.35	0.00	3.9	96.1	0.0	-0.89	0.72	0.68	2.45	1.6	0.005	0.75	0.0	0.05	16.16	0.00	2.127	10.32	2.13	4.6	95.4	0.0	-0.73	0.47	0.74	0.72	2.48	11893	1521	5	0	15	0	0	logfile
✔	7SiL	25143	2024-04-08	2021-10-14	2.7	1.97	—	1.5	0.004	0.70	0.0	0.05	13.55	0.00	2.160	6.65	0.15	2.1	97.9	0.0	0.60	0.75	0.72	3.10	1.6	0.003	0.57	0.0	0.04	15.34	0.00	2.184	8.01	1.99	2.9	97.1	0.0	0.56	0.39	0.77	0.78	2.96	12924	1564	8	0	34	0	0	logfile
✔	7N5G	24189	2024-04-05	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.52	0.0	0.04	16.31	0.00	2.224	3.92	0.98	1.4	98.6	0.0	3.11	1.20	0.39	0.80	2.58	2926	371	1	0	1	0	0	logfile

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