Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oG3	20051	2024-04-05	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.005	1.11	0.0	0.00	8.01	0.00	2.615	51.00	0.00	13.0	87.0	0.0	-1.64	2.16	0.67	0.87	—	1215	396	4	0	9	0	0	logfile
✔	7KPW	22990	2024-04-05	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.003	0.73	0.0	0.04	5.85	0.00	2.148	2.79	0.00	11.5	87.9	0.6	-0.50	2.04	0.82	0.82	—	4313	865	1	0	0	0	0	logfile
✔	8oSH	17153	2024-04-06	2023-04-18	4.9	5.59	5.45	4.9	0.006	0.94	0.0	0.06	3.38	0.00	2.299	5.83	0.00	11.2	88.7	0.1	-0.55	0.82	0.82	—	4.9	0.003	0.65	0.0	0.04	4.66	0.00	2.198	8.69	0.00	15.1	84.9	0.0	-0.88	0.53	0.83	0.85	—	6770	1372	5	0	0	0	0	logfile
✔	7JLX	22383	2024-04-05	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile
✔	6VQi	21351	2024-04-05	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	3.8	0.003	0.58	0.0	0.04	4.43	0.00	2.212	4.17	0.00	6.5	93.4	0.1	1.98	0.77	0.56	0.74	—	5278	1062	8	0	0	0	0	logfile
✔	8G6K	29772	2024-04-07	2023-02-15	3.6	3.71	3.52	3.4	0.002	0.48	0.0	0.04	4.19	0.00	2.523	0.20	0.00	2.7	97.3	0.0	1.65	0.54	0.71	—	3.5	0.004	0.68	0.0	0.04	4.83	0.00	2.269	4.05	0.00	8.2	91.8	0.0	-0.23	1.47	0.54	0.74	—	9388	1379	7	0	0	0	2576	logfile
✔	6U68	20662	2024-04-07	2019-08-29	4.5	4.54	—	4.5	0.006	0.90	0.0	0.06	4.27	0.00	2.419	0.52	0.00	2.6	97.3	0.1	-3.82	0.71	0.71	—	4.5	0.003	0.71	0.0	0.05	4.13	0.00	2.325	3.21	0.00	6.1	93.9	0.0	-0.04	1.78	0.77	0.81	—	10489	2133	8	0	0	0	0	logfile
✔	7DZY	30921	2024-04-10	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	3.14	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.83	0.0	0.00	5.21	0.00	2.105	3.02	0.00	10.5	89.3	0.2	-2.46	2.13	0.71	0.70	—	18708	4677	9	0	0	0	0	logfile
✔	7R9U	24331	2024-04-06	2021-06-29	4.4	5.41	—	4.3	0.002	0.34	0.0	0.04	4.36	0.00	2.248	3.50	0.00	9.1	90.3	0.6	-4.49	0.78	0.62	—	4.3	0.003	0.52	0.0	0.04	8.28	0.00	1.920	9.32	0.00	3.4	96.6	0.0	0.39	2.36	0.91	0.84	—	7727	505	1	0	0	0	3939	logfile
✔	8SRM	40735	2024-04-05	2023-05-05	4.46	5.07	4.47	4.4	0.003	0.51	0.0	0.03	4.38	0.00	2.233	4.32	0.00	4.0	96.0	0.0	2.57	0.82	0.84	—	4.3	0.006	0.64	0.0	0.04	5.47	0.00	2.070	5.40	0.00	7.2	92.8	0.0	-0.25	1.59	0.83	0.86	—	5773	1163	6	0	0	0	0	logfile
✔	7R9E	24324	2024-04-06	2021-06-29	4.0	4.83	—	3.9	0.002	0.37	0.0	0.04	4.45	0.00	2.277	3.11	0.00	9.9	88.7	1.4	-3.58	0.87	0.80	—	3.9	0.003	0.59	0.0	0.04	9.14	0.00	2.120	9.84	0.98	5.4	94.6	0.0	-0.26	2.08	0.88	0.82	—	7726	505	1	0	0	0	3938	logfile
✔	7R9o	24330	2024-04-06	2021-06-29	4.0	4.66	—	4.0	0.002	0.38	0.0	0.04	4.49	0.00	2.252	2.85	0.25	10.5	88.7	0.8	-4.93	0.83	0.71	—	4.0	0.003	0.61	0.0	0.04	10.79	0.00	1.908	12.95	0.98	4.0	96.0	0.0	-0.49	3.44	0.88	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	7R9K	24328	2024-04-06	2021-06-29	4.1	4.93	—	4.0	0.002	0.35	0.0	0.04	4.65	0.00	2.223	3.24	0.00	10.3	89.1	0.6	-4.05	0.83	0.71	—	4.1	0.002	0.53	0.0	0.04	8.08	0.00	1.906	9.97	0.00	4.4	95.6	0.0	0.09	2.08	0.89	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	6MWQ	9277	2024-04-11	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.004	0.72	0.0	0.04	13.43	0.00	2.123	8.59	2.21	4.3	95.5	0.2	-1.26	1.34	0.78	0.87	1.84	22072	2873	8	0	0	0	0	logfile
✔	8FTK	29439	2024-04-06	2023-01-12	4.56	5.56	4.86	4.4	0.002	0.58	0.0	0.04	4.66	0.00	2.125	4.21	0.00	5.9	94.1	0.0	0.74	0.85	0.81	—	4.4	0.003	0.55	0.0	0.04	4.49	0.00	2.164	4.30	0.00	8.2	91.8	0.0	0.75	1.24	0.86	0.82	—	7840	1584	1	0	0	0	0	logfile
✔	8DXQ	27773	2024-04-07	2022-08-02	3.8	4.02	3.81	3.9	0.002	0.52	0.0	0.04	4.66	0.00	2.301	1.14	0.00	10.1	89.9	0.0	0.26	0.65	0.71	—	3.9	0.004	0.64	0.0	0.04	5.26	0.00	2.238	1.07	0.00	12.2	87.7	0.0	0.18	0.28	0.64	0.69	—	10435	2101	7	0	0	0	0	logfile
✔	6PWC	20505	2024-04-05	2019-07-22	4.9	5.55	—	4.5	0.003	0.67	0.0	0.05	4.68	0.01	2.345	2.19	0.00	1.3	98.7	0.0	-0.09	0.61	0.67	—	4.6	0.004	0.75	0.0	0.04	6.37	0.00	2.094	19.59	0.00	7.2	92.8	0.0	-0.38	1.57	0.61	0.59	—	5879	1055	5	0	0	0	0	logfile
✔	7R9M	24329	2024-04-06	2021-06-29	4.0	4.58	—	3.9	0.002	0.38	0.0	0.04	4.68	0.00	2.214	3.88	0.00	8.3	90.9	0.8	-4.83	0.85	0.77	—	3.9	0.002	0.54	0.0	0.04	9.11	0.00	2.104	8.80	0.49	3.2	96.8	0.0	-0.14	1.72	0.86	0.78	—	7727	505	1	0	0	0	3939	logfile
✔	6RLB	4918	2024-04-10	2019-05-01	4.5	4.85	4.49	4.3	0.007	0.95	0.0	0.06	4.70	0.00	2.082	0.71	0.00	4.0	95.9	0.0	-1.08	0.80	0.63	—	4.3	0.003	0.72	0.0	0.04	5.23	0.00	2.224	3.54	0.00	11.8	88.1	0.0	-0.71	1.83	0.86	0.66	—	20407	4122	14	0	0	0	0	logfile
✔	8P83	17540	2024-04-15	2023-05-31	3.87	4.82	3.91	3.8	0.003	0.66	3.0	0.06	4.70	0.00	2.470	0.84	0.00	2.0	97.9	0.1	0.35	0.81	0.58	—	3.8	0.003	0.79	0.0	0.04	5.70	0.01	2.230	9.10	0.00	7.0	93.0	0.0	-1.97	2.83	0.85	0.58	—	35656	7036	4	0	0	0	0	logfile

• Page 1 of 610
• next →