Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LC9	23270	2024-04-05	2021-01-10	3.2	3.25	—	3.1	0.004	0.72	0.0	0.05	17.46	0.00	1.884	31.60	18.58	13.4	86.6	0.0	-4.15	0.71	0.77	-0.84	3.1	0.004	0.68	0.0	0.05	17.25	0.00	2.139	28.50	10.32	11.2	88.8	0.0	-3.62	0.66	0.69	0.79	-0.22	3497	525	12	0	0	0	0	logfile
✔	6RJU	4906	2024-04-05	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.9	0.003	0.66	0.0	0.03	15.97	0.00	2.278	7.54	1.01	7.0	93.0	0.0	-0.88	1.30	0.30	0.04	1.02	1992	131	1	0	0	0	997	logfile
✔	7N8N	24238	2024-04-07	2021-06-15	3.89	5.26	—	4.4	0.006	0.85	0.0	0.04	27.93	0.01	2.035	27.61	0.00	9.6	90.4	0.0	-1.71	0.87	0.78	-0.56	4.4	0.004	0.75	0.0	0.04	28.76	0.01	2.141	21.14	2.63	6.8	92.9	0.3	-0.72	1.28	0.87	0.80	-0.05	11121	798	6	250	0	0	0	logfile
✔	8XBW	38231	2024-04-05	2023-12-07	2.89	5.59	1.82	5.3	0.006	1.06	0.0	0.05	23.74	0.01	1.155	13.10	0.00	0.8	99.2	0.0	-0.65	0.76	0.71	-0.50	5.3	0.006	1.32	0.0	0.06	23.79	0.01	2.204	30.68	2.48	2.5	97.5	0.0	-2.45	2.02	0.81	0.81	0.77	2671	242	5	36	0	0	0	logfile
✔	7KU5	23034	2024-04-05	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.002	0.76	0.0	0.05	15.78	0.01	2.246	8.71	5.00	12.8	87.2	0.0	-1.24	1.17	0.25	0.69	2.46	750	88	1	0	4	0	0	logfile
✔	7ZPK	14856	2024-04-12	2022-04-27	3.81	7.29	3.88	5.6	0.004	0.81	0.0	0.05	15.30	0.02	2.214	2.12	0.68	2.8	97.2	0.0	0.04	0.81	0.55	-0.44	4.0	0.003	0.67	0.0	0.04	17.36	0.00	1.910	21.18	2.63	5.7	94.3	0.0	0.37	2.36	0.86	0.72	-0.64	25935	1513	3	55	0	0	12760	logfile
✔	8EFP	28087	2024-04-05	2022-09-08	3.8	4.73	3.90	4.0	0.006	1.46	7.0	0.09	18.61	0.01	1.908	33.65	3.07	13.3	86.7	0.0	-4.26	0.82	0.62	-0.42	4.0	0.004	0.89	0.0	0.04	18.96	0.00	2.081	25.08	4.02	11.8	88.2	0.0	-2.48	0.89	0.84	0.73	-0.30	4705	594	2	0	0	0	0	logfile
✔	8DWi	27755	2024-04-05	2022-08-01	3.4	4.06	3.58	4.1	0.003	0.63	0.0	0.04	13.02	0.01	2.258	7.44	0.00	5.0	95.0	0.0	0.29	0.28	0.33	-0.40	4.0	0.003	0.75	0.0	0.04	16.44	0.01	2.119	10.92	2.23	4.5	95.5	0.0	-0.30	1.77	0.47	0.72	2.55	3192	424	1	0	0	0	0	logfile
✔	7TMC	25995	2024-04-05	2022-01-19	3.25	3.24	2.95	4.2	0.005	0.72	0.0	0.07	18.02	0.01	2.152	13.78	0.00	9.5	90.5	0.0	-4.08	0.21	0.31	-0.39	3.5	0.003	0.84	0.0	0.06	15.57	0.01	2.182	16.12	5.29	9.5	90.5	0.0	-4.13	1.95	0.34	0.75	3.02	3426	405	6	0	12	0	0	logfile
✔	7Q4W	13819	2024-04-10	2021-11-02	3.78	5.84	—	4.5	0.005	0.84	0.0	0.05	13.85	0.01	2.186	8.26	0.52	3.1	96.8	0.0	-0.36	0.83	0.65	-0.36	4.5	0.006	0.83	0.0	0.05	15.45	0.00	2.105	29.90	2.17	5.9	94.1	0.0	-0.67	1.30	0.92	0.85	-0.70	18050	2364	12	0	22	0	0	logfile
✔	5VA2	8651	2024-04-09	2017-03-24	3.8	5.28	—	4.3	0.008	1.08	0.0	0.06	12.47	0.00	1.607	11.18	1.08	7.7	90.7	1.6	-3.86	0.64	0.74	-0.32	4.2	0.004	0.94	0.0	0.05	16.35	0.00	2.107	24.66	3.30	4.9	94.7	0.4	-1.25	1.94	0.68	0.83	0.05	17576	2232	4	0	0	0	0	logfile
✔	8iDC	35363	2024-04-07	2023-02-12	3.9	5.12	3.90	3.9	0.004	1.02	0.0	0.05	10.68	0.01	2.221	5.95	0.00	6.9	92.9	0.2	-3.33	0.77	0.83	-0.28	3.9	0.004	0.72	0.0	0.04	12.29	0.00	2.093	21.46	1.49	8.2	91.7	0.1	-1.22	0.43	0.77	0.84	0.06	9701	1342	5	0	0	0	0	logfile
✔	8A1R	15084	2024-04-07	2022-06-01	3.6	5.63	3.62	3.4	0.011	0.86	0.0	0.06	16.56	0.00	2.097	11.72	0.00	5.2	94.8	0.0	-0.06	0.91	0.75	-0.28	3.5	0.003	0.69	0.0	0.05	16.41	0.00	2.166	19.75	1.12	6.4	93.6	0.0	-0.56	0.61	0.95	0.86	-0.05	9286	1186	4	0	4	0	0	logfile
✔	7FG3	31577	2024-04-06	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.004	0.90	0.0	0.05	16.67	0.01	2.017	24.21	3.48	15.3	84.1	0.6	-3.68	0.72	0.23	0.46	0.35	9054	1166	2	0	0	0	0	logfile
✔	6TZ5	20589	2024-04-14	2019-08-10	3.1	3.56	3.05	3.7	0.003	0.51	0.0	0.04	14.11	0.00	2.220	7.23	0.00	1.1	98.9	0.0	0.24	0.40	0.55	-0.21	3.4	0.003	0.76	0.0	0.04	18.85	0.00	2.077	13.60	3.88	1.5	98.5	0.0	3.60	1.61	0.50	0.84	0.87	93500	12104	68	0	0	0	0	logfile
✔	7TTS	26122	2024-04-10	2022-02-01	2.9	12.34	—	—	0.008	0.99	1.0	0.08	12.97	0.01	1.788	5.64	0.30	3.2	96.6	0.1	1.89	0.77	0.55	-0.20	—	0.003	0.60	0.0	0.04	13.75	0.00	1.912	17.34	0.43	3.4	96.5	0.1	2.16	0.99	0.71	0.43	-0.20	18793	2686	12	0	23	0	0	logfile
✔	8iEM	35386	2024-04-06	2023-02-15	3.35	3.87	3.59	3.9	0.003	0.69	0.0	0.04	16.41	0.01	2.211	7.27	0.58	6.2	93.7	0.1	-1.00	0.51	0.55	-0.19	3.9	0.003	0.71	0.0	0.04	17.31	0.01	2.071	9.90	3.36	8.0	92.0	0.0	-1.17	0.92	0.56	0.72	0.73	7829	1011	2	0	3	0	0	logfile
✔	7oLE	12979	2024-04-12	2021-05-19	3.41	4.34	3.59	3.9	0.013	1.74	25.0	0.10	15.12	0.01	1.371	42.05	0.38	17.2	81.9	0.8	-5.68	0.55	0.26	-0.19	3.6	0.004	0.89	1.0	0.04	15.98	0.00	2.082	21.90	2.42	10.8	89.0	0.2	-1.97	1.93	0.77	0.76	1.06	26995	2899	14	0	1129	0	0	logfile
✔	7YKS	33896	2024-04-10	2022-07-23	3.0	3.20	3.06	4.7	0.008	1.00	0.0	0.06	10.27	0.01	2.291	4.01	0.00	6.7	93.1	0.2	-6.58	0.17	0.11	-0.18	3.2	0.004	0.93	2.0	0.04	16.76	0.01	2.171	10.38	1.00	4.8	95.2	0.0	-0.98	2.24	0.59	0.80	1.81	18984	2364	4	0	0	0	0	logfile
✔	7RYE	24735	2024-04-10	2021-08-25	3.9	4.10	—	4.0	0.003	0.65	0.0	0.04	14.57	0.00	2.090	14.13	0.00	3.7	96.3	0.0	1.07	0.76	0.69	-0.18	4.0	0.003	0.72	0.0	0.04	17.76	0.00	2.100	15.41	3.80	4.0	96.0	0.0	1.41	1.07	0.81	0.80	0.20	19708	2535	24	0	0	0	0	logfile

• Page 1 of 610
• next →