Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GH5	0001	2024-04-13	2018-05-04	3.4	3.71	—	3.4	0.033	3.30	333.0	0.22	17.39	0.02	1.847	24.49	4.29	11.0	86.7	2.3	-4.34	0.89	0.88	2.50	3.4	0.005	0.83	1.0	0.04	18.41	0.00	2.134	12.51	2.90	9.5	89.5	1.0	-1.02	1.32	0.88	0.86	1.79	28316	3593	8	92	50	0	0	logfile
✔	6GH6	0002	2024-04-13	2018-05-04	4.1	4.20	—	3.9	0.004	0.91	0.0	0.05	14.50	0.00	1.934	15.53	0.38	9.7	89.3	0.9	-3.61	0.85	0.74	—	3.9	0.004	0.77	0.0	0.04	15.96	0.00	2.033	11.67	0.08	9.9	89.5	0.6	-1.05	1.40	0.87	0.81	—	28051	3482	8	96	51	0	0	logfile
✔	6GiY	0008	2024-04-13	2018-05-15	4.3	4.14	—	4.0	0.007	1.18	0.0	0.06	10.19	0.01	2.232	6.19	0.29	12.7	87.1	0.3	-5.09	0.73	0.77	—	4.0	0.003	0.77	0.0	0.04	12.11	0.01	2.109	11.10	0.06	9.4	90.6	0.1	-2.10	0.91	0.73	0.76	—	28969	3649	9	0	0	0	0	logfile
✔	6GJ1	0009	2024-04-08	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.004	0.91	0.0	0.05	12.88	0.01	2.123	26.89	0.14	19.3	80.6	0.1	-3.97	1.15	0.86	0.78	—	13013	1638	4	0	0	0	0	logfile
✔	6GJ3	0010	2024-04-09	2018-05-15	4.3	4.02	—	3.9	0.008	1.19	0.0	0.06	10.34	0.01	2.248	5.14	0.37	13.5	86.2	0.3	-4.76	0.71	0.78	—	3.9	0.003	0.71	0.0	0.04	12.15	0.01	2.272	9.39	0.00	9.3	90.7	0.0	-1.52	0.73	0.71	0.77	—	17405	2194	7	0	0	0	0	logfile
✔	6GJC	0011	2024-04-09	2018-05-16	3.3	3.78	3.65	3.6	0.008	1.07	6.0	0.06	10.27	0.01	2.247	5.47	1.03	7.5	92.5	0.0	-4.03	0.86	0.84	2.14	3.6	0.003	0.67	0.0	0.04	13.11	0.00	2.131	10.14	2.50	5.8	94.2	0.0	-0.50	0.65	0.87	0.86	1.69	124992	16620	12	0	6	0	0	logfile
✔	6GJZ	0012	2024-04-07	2018-05-17	4.06	4.32	3.49	4.1	0.011	1.11	0.0	0.05	14.45	0.01	2.008	13.98	0.00	10.8	88.9	0.3	-4.09	0.66	0.79	—	4.1	0.004	0.78	0.0	0.04	14.84	0.00	2.008	29.30	0.00	11.3	88.6	0.1	-0.62	1.50	0.67	0.80	—	10503	682	4	28	2	0	4402	logfile
✔	6GKH	0023	2024-04-07	2018-05-21	4.06	4.18	3.92	4.1	0.006	1.49	0.0	0.05	13.47	0.00	1.641	13.64	0.00	10.0	90.0	0.0	-4.26	0.61	0.79	—	4.1	0.003	1.04	0.0	0.04	14.62	0.00	1.843	21.37	0.00	9.1	90.9	0.0	-0.74	1.52	0.61	0.81	—	10587	685	4	30	4	0	4399	logfile
✔	6GKM	0024	2024-04-07	2018-05-21	3.87	4.07	2.00	4.0	0.007	0.98	0.0	0.05	13.93	0.00	2.134	11.37	0.16	9.7	90.2	0.1	-3.66	0.63	0.81	2.22	4.0	0.004	0.73	0.0	0.04	16.19	0.00	2.085	21.02	1.46	9.5	90.5	0.0	-0.22	1.46	0.61	0.81	2.54	10562	689	4	28	2	0	4402	logfile
✔	6GoV	0043	2024-04-15	2018-06-04	3.7	4.02	3.65	3.9	0.008	0.93	0.0	0.06	13.50	0.01	1.963	5.69	0.25	7.7	92.2	0.1	-3.76	0.79	0.79	1.97	3.9	0.002	0.59	0.0	0.04	15.36	0.00	2.078	8.97	1.78	4.6	95.4	0.0	-0.04	1.49	0.82	0.80	1.09	35040	4157	14	117	3	0	0	logfile
✔	6GSA	0051	2024-04-09	2018-06-13	4.2	5.94	—	5.0	0.011	1.24	4.0	0.09	12.00	0.01	2.189	4.69	1.75	5.1	94.7	0.2	-2.92	0.67	0.44	—	5.0	0.004	0.76	0.0	0.04	12.40	0.00	2.126	23.17	0.00	5.7	94.3	0.0	-0.41	1.23	0.83	0.75	—	16272	1999	5	0	0	0	0	logfile
✔	6GTC	0061	2024-04-08	2018-06-18	3.91	3.85	—	3.8	0.004	0.94	0.0	0.05	16.56	0.01	2.275	5.90	0.86	8.8	91.2	0.0	-5.69	0.70	0.67	1.97	3.8	0.003	0.70	0.0	0.04	19.10	0.00	2.119	14.35	3.61	7.5	92.5	0.0	-2.76	0.77	0.72	0.70	1.50	11931	1280	4	65	0	0	0	logfile
✔	6GTD	0062	2024-04-06	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	23.09	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.65	—	3.9	0.009	1.12	0.0	0.08	22.54	0.01	1.891	37.73	0.00	26.1	73.8	0.1	-3.90	0.98	0.79	0.68	—	6456	1269	4	66	0	0	0	logfile
✔	6GTE	0063	2024-04-07	2018-06-18	4.07	3.99	—	3.9	0.009	1.11	0.0	0.06	17.33	0.01	2.232	8.08	0.75	15.6	84.3	0.1	-5.76	0.73	0.71	—	3.9	0.004	0.66	0.0	0.04	17.49	0.00	2.118	15.42	0.00	9.1	90.9	0.0	-3.23	0.78	0.73	0.71	—	10872	1274	4	67	0	0	0	logfile
✔	6GTF	0064	2024-04-07	2018-06-18	3.63	3.94	—	3.8	0.010	1.17	0.0	0.07	17.17	0.01	2.030	10.45	0.43	15.5	84.5	0.0	-5.84	0.72	0.64	1.89	3.8	0.003	0.69	0.0	0.04	18.76	0.00	2.167	15.23	2.16	7.1	92.9	0.0	-3.17	1.42	0.74	0.64	1.54	10871	1280	4	66	0	0	0	logfile
✔	6GTG	0065	2024-04-08	2018-06-18	3.27	3.35	—	3.3	0.009	1.07	0.0	0.06	16.10	0.01	2.051	6.65	0.69	14.5	85.5	0.0	-5.96	0.68	0.75	2.90	3.3	0.004	0.65	0.0	0.04	18.18	0.00	2.036	14.09	3.20	11.2	88.8	0.0	-3.26	1.13	0.70	0.77	2.21	12538	1298	8	91	4	3	0	logfile
✔	6GVE	0071	2024-04-15	2018-06-20	3.9	4.13	3.97	4.0	0.010	0.99	0.0	0.06	10.44	0.01	2.133	7.04	0.11	4.2	95.8	0.0	-3.72	0.77	0.75	1.99	4.0	0.003	0.68	0.0	0.05	14.51	0.00	2.123	14.15	3.30	4.1	95.9	0.0	-0.51	1.29	0.81	0.82	1.62	33412	4272	24	0	8	0	0	logfile
✔	6GX5	0077	2024-04-05	2018-06-26	3.2	2.51	2.94	3.2	0.017	1.20	0.0	0.11	16.09	0.01	2.596	5.96	4.94	4.3	95.7	0.0	-3.50	0.85	0.88	5.60	3.2	0.004	0.71	0.0	0.05	17.59	0.00	2.370	5.96	2.88	5.8	94.2	0.0	-2.79	0.61	0.83	0.86	5.18	2133	282	3	0	0	0	0	logfile
✔	6GY6	0088	2024-04-10	2018-06-28	4.0	3.98	—	3.8	0.006	0.88	0.0	0.05	10.55	0.01	2.234	4.84	1.08	2.6	97.4	0.0	-4.40	0.90	0.84	—	3.8	0.003	0.64	0.0	0.04	14.48	0.00	2.142	10.69	1.61	1.8	98.2	0.0	2.84	0.92	0.90	0.85	—	72462	9139	26	0	0	0	0	logfile
✔	6GYB	0089	2024-04-06	2018-06-28	3.28	3.42	—	3.4	0.008	0.92	0.0	0.06	9.51	0.01	2.304	4.03	0.22	6.6	93.4	0.0	-4.49	0.81	0.87	4.60	3.4	0.005	0.62	0.0	0.04	14.18	0.00	2.154	7.14	2.87	5.9	94.1	0.0	-0.97	0.54	0.81	0.89	3.72	59318	7546	42	0	0	0	0	logfile

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