Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZK3	14753	2024-04-07	2022-04-12	2.85	3.10	2.81	3.0	0.003	0.58	0.0	0.04	13.32	0.00	2.118	14.60	1.09	4.7	95.3	0.0	1.70	0.78	0.82	2.96	3.0	0.003	0.63	0.0	0.04	15.74	0.00	2.282	6.44	2.10	5.4	94.6	0.0	1.18	0.64	0.73	0.83	3.10	11898	1442	4	0	8	0	0	logfile
✔	7Wo7	32641	2024-04-05	2022-01-20	3.8	3.99	—	3.9	0.003	0.71	0.0	0.04	11.24	0.00	2.163	6.93	8.82	9.7	90.3	0.0	-4.70	0.72	0.74	1.98	3.9	0.005	0.76	0.0	0.05	15.27	0.01	2.085	17.63	6.07	16.2	83.8	0.0	-3.31	1.79	0.75	0.77	2.07	4870	634	3	0	1	0	0	logfile
✔	8DNP	27576	2024-04-15	2022-07-11	2.69	2.56	2.88	2.7	0.010	1.16	0.0	0.08	12.98	0.00	1.768	10.47	1.31	2.3	97.7	0.0	0.44	0.76	0.82	4.00	2.7	0.004	0.90	4.0	0.04	19.08	0.00	1.858	12.18	2.15	1.6	98.4	0.0	5.72	0.66	0.73	0.83	3.82	33936	4128	48	0	24	0	0	logfile
✔	7KYB	23074	2024-04-07	2020-12-07	3.2	3.39	—	3.4	0.012	1.23	0.0	0.05	17.75	0.00	1.917	12.45	8.04	7.9	91.9	0.2	-2.75	0.69	0.86	3.54	3.4	0.003	0.60	0.0	0.04	16.94	0.00	2.050	9.20	4.63	4.7	95.3	0.0	-0.27	0.90	0.69	0.88	2.99	10814	1322	7	0	14	0	0	logfile
✔	7o5H	12736	2024-04-15	2021-04-08	3.1	2.93	3.04	2.8	0.002	0.33	0.0	0.03	21.63	0.00	1.262	5.88	0.98	2.1	97.9	0.0	1.09	0.86	0.83	1.84	2.8	0.006	0.67	0.0	0.04	22.33	0.01	1.076	13.62	3.21	3.9	96.1	0.0	0.32	1.48	0.87	0.85	1.45	34436	1730	22	964	167	0	0	logfile
✔	7EZ0	31385	2024-04-06	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	23.64	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.006	0.70	0.0	0.04	23.85	0.00	1.860	8.26	0.00	0.0	0.0	0.0	—	1.55	0.77	0.86	—	8306	0	1	387	27	0	0	logfile
✔	6U9E	20695	2024-04-09	2019-09-08	4.21	4.33	—	4.3	0.008	1.08	0.0	0.06	9.09	0.00	2.228	5.86	0.00	14.1	85.9	0.0	-4.33	0.79	0.82	—	4.3	0.003	0.70	0.0	0.05	11.62	0.00	2.172	11.54	0.10	13.5	86.5	0.0	-2.96	1.36	0.79	0.82	—	17175	2148	6	0	0	0	0	logfile
✔	7B1G	11985	2024-04-11	2020-11-24	3.6	3.70	—	3.6	0.006	0.72	0.0	0.05	15.84	0.00	2.213	12.50	0.09	7.4	92.6	0.0	-2.22	0.79	0.85	2.34	3.6	0.002	0.61	0.0	0.04	17.40	0.00	2.155	9.65	1.87	4.4	95.6	0.0	0.30	0.38	0.78	0.83	1.28	21661	2689	9	0	8	0	0	logfile
✔	7WoC	32648	2024-04-05	2022-01-21	3.35	3.49	—	3.4	0.002	0.48	0.0	0.04	9.58	0.00	2.288	6.75	4.60	6.3	93.7	0.0	-4.80	0.72	0.76	2.37	3.4	0.004	0.71	0.0	0.05	15.13	0.00	2.163	12.85	4.98	11.5	88.5	0.0	-2.96	1.25	0.75	0.83	2.50	4746	610	4	0	1	0	0	logfile
✔	6KLo	0713	2024-04-11	2019-07-30	2.8	3.01	—	2.9	0.005	0.60	0.0	0.05	13.06	0.00	2.185	5.62	0.12	5.9	94.1	0.0	-3.14	0.77	0.87	4.15	2.9	0.003	0.56	0.0	0.05	15.91	0.00	2.120	5.41	1.54	6.0	94.0	0.0	-0.75	0.40	0.75	0.87	3.80	23275	2972	15	0	14	0	0	logfile
✔	6HTS	3954	2024-04-16	2018-10-04	4.8	5.78	—	4.7	0.004	0.55	0.0	0.04	17.81	0.00	1.820	11.76	1.39	1.7	98.3	0.0	-2.23	0.86	0.69	—	4.7	0.004	0.67	0.0	0.04	19.07	0.00	2.042	21.63	0.00	3.5	96.5	0.0	0.64	3.55	0.88	0.79	—	38744	4453	26	300	7	0	0	logfile
✔	7U1Q	26303	2024-04-11	2022-02-21	3.9	4.05	—	4.0	0.003	0.54	0.0	0.04	16.23	0.00	2.228	6.87	0.00	6.6	93.4	0.0	-1.11	0.53	0.75	1.59	4.0	0.004	0.72	0.0	0.05	17.03	0.00	2.103	12.54	3.63	5.7	94.3	0.0	0.08	1.20	0.53	0.76	0.96	21013	2791	11	0	25	0	0	logfile
✔	7X95	33067	2024-04-06	2022-03-15	3.9	4.89	3.86	4.3	0.003	0.50	0.0	0.04	13.80	0.00	1.979	7.18	0.00	6.4	93.6	0.0	-1.00	0.79	0.71	3.07	4.3	0.005	0.64	0.0	0.04	13.71	0.00	1.994	16.04	0.84	9.3	90.7	0.0	-1.23	0.87	0.81	0.79	3.13	6522	427	4	0	2	0	3176	logfile
✔	7RUC	24702	2024-04-07	2021-08-16	3.6	3.41	3.38	3.4	0.004	0.53	0.0	0.04	14.65	0.00	1.772	7.64	0.00	4.6	95.4	0.0	1.89	0.68	0.76	2.48	3.4	0.003	0.58	0.0	0.04	16.51	0.00	1.925	9.04	2.87	2.9	97.1	0.0	1.65	0.94	0.76	0.83	2.33	10766	1344	9	0	5	0	0	logfile
✔	7NF6	12296	2024-04-06	2021-02-05	3.05	3.03	2.87	3.2	0.006	0.75	0.0	0.05	17.27	0.00	2.114	7.83	8.17	5.0	94.9	0.1	-4.80	0.69	0.85	3.59	3.2	0.004	0.66	0.0	0.04	16.72	0.00	2.190	7.60	4.67	4.7	95.2	0.1	-0.69	1.62	0.68	0.86	3.32	8817	1078	6	0	12	0	0	logfile
✔	8B41	15836	2024-04-14	2022-09-19	3.8	3.07	3.30	3.7	0.002	0.48	0.0	0.04	11.83	0.00	2.169	9.52	4.69	3.6	96.4	0.0	-0.49	0.78	0.77	1.42	3.7	0.005	0.75	2.0	0.04	14.78	0.00	2.126	15.57	4.12	4.9	95.1	0.0	-0.40	1.49	0.79	0.78	1.28	31259	3805	10	0	0	0	0	logfile
✔	7TD0	25819	2024-04-08	2021-12-30	2.83	2.95	—	2.9	0.003	0.45	0.0	0.04	12.58	0.00	2.187	3.45	0.72	3.3	96.7	0.0	-1.88	0.53	0.72	3.80	2.9	0.004	0.54	0.0	0.04	15.57	0.00	2.039	7.79	3.75	3.9	96.1	0.0	0.58	0.53	0.55	0.76	3.78	13308	903	5	0	1	0	6471	logfile
✔	7P6K	13230	2024-04-16	2021-07-16	3.8	3.45	3.78	3.2	0.002	0.47	0.0	0.04	11.36	0.00	2.230	9.61	3.89	3.6	96.4	0.0	-0.13	0.73	0.70	1.00	3.2	0.003	0.57	0.0	0.04	14.42	0.00	2.170	15.03	4.03	5.5	94.5	0.0	-0.47	0.63	0.71	0.68	0.94	38106	4650	9	0	0	0	0	logfile
✔	7X91	33063	2024-04-06	2022-03-15	4.3	5.81	4.21	4.4	0.003	0.63	0.0	0.05	14.40	0.00	2.120	11.23	0.00	10.7	89.3	0.0	-2.69	0.81	0.73	—	4.5	0.004	0.65	0.0	0.04	13.04	0.01	2.012	18.67	0.00	13.8	86.2	0.0	-1.79	0.93	0.82	0.78	—	6559	427	4	0	2	0	3196	logfile
✔	7P60	13213	2024-04-16	2021-07-15	3.8	3.10	3.75	3.2	0.004	0.55	0.0	0.04	13.06	0.00	2.130	15.09	5.44	3.9	96.1	0.0	-0.45	0.72	0.69	1.05	2.9	0.004	0.65	0.0	0.04	15.73	0.00	2.125	17.79	3.78	5.2	94.8	0.0	-0.87	1.56	0.70	0.68	0.85	38406	4680	9	0	0	0	0	logfile

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