Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RZQ	24774	2024-04-05	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.31	0.0	0.03	15.02	0.00	2.341	5.30	1.07	0.0	100.0	0.0	5.97	0.30	0.82	0.82	2.01	2421	322	6	0	0	0	0	logfile
✔	8iXJ	35793	2024-04-08	2023-04-01	3.1	3.03	3.07	3.1	0.012	1.45	0.0	0.09	10.47	0.00	2.412	3.04	0.00	0.0	100.0	0.0	3.48	0.67	0.86	2.90	3.1	0.002	0.32	0.0	0.03	13.99	0.00	2.218	2.29	0.88	0.0	100.0	0.0	7.14	1.01	0.65	0.85	0.93	13760	1840	40	0	0	0	0	logfile
✔	7RZR	24775	2024-04-05	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.003	0.32	0.0	0.03	15.17	0.00	2.285	5.04	0.35	0.0	100.0	0.0	6.38	0.31	0.82	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	7RZT	24777	2024-04-05	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.53	0.00	2.337	5.44	0.35	0.0	100.0	0.0	6.28	0.23	0.80	0.83	2.93	2451	324	6	0	0	0	0	logfile
✔	7RX5	24725	2024-04-06	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.002	0.33	0.0	0.03	13.43	0.00	2.264	5.87	0.00	0.0	100.0	0.0	5.24	0.23	0.71	0.87	2.92	9120	1160	40	0	0	0	0	logfile
✔	7QV5	14167	2024-04-05	2022-01-19	3.0	3.03	1.88	3.0	0.010	0.44	0.0	0.06	9.44	0.00	2.689	1.08	0.00	6.2	93.8	0.0	-2.64	0.46	0.86	7.89	3.1	0.002	0.36	0.0	0.06	12.41	0.00	2.576	1.08	0.00	2.1	97.9	0.0	-1.49	0.86	0.50	0.90	6.84	5562	342	27	0	18	0	2997	logfile
✔	7RZV	24779	2024-04-05	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	16.04	0.00	2.237	5.05	1.35	0.0	100.0	0.0	5.77	0.88	0.83	0.83	1.74	2562	339	6	0	0	0	0	logfile
✔	8oL5	16949	2024-04-05	2023-03-30	3.4	3.10	1.47	3.0	0.003	0.44	0.0	0.06	9.97	0.00	2.393	2.17	0.00	0.0	100.0	0.0	-0.75	0.53	0.87	5.76	3.0	0.002	0.37	0.0	0.05	15.49	0.00	2.326	3.70	3.91	2.1	97.9	0.0	-1.20	1.02	0.55	0.88	5.14	2260	310	10	0	0	0	0	logfile
✔	6ZLG	11265	2024-04-14	2020-06-30	3.0	3.18	—	3.1	0.003	0.44	0.0	0.03	16.50	0.00	2.180	7.56	4.15	0.1	99.9	0.0	1.26	0.80	0.87	2.98	3.1	0.002	0.37	0.0	0.03	17.78	0.00	2.156	5.87	3.13	1.5	98.5	0.0	5.38	1.17	0.81	0.89	2.84	33008	4072	24	0	0	0	0	logfile
✔	8CZi	27098	2024-04-05	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.19	0.00	2.148	5.65	1.35	0.0	100.0	0.0	5.64	0.85	0.82	0.84	1.98	2550	339	6	0	0	0	0	logfile
✔	8X82	38133	2024-04-08	2023-11-27	2.8	2.70	2.78	2.9	0.002	0.41	0.0	0.03	16.43	0.00	2.181	5.24	0.84	0.8	99.2	0.0	3.68	0.57	0.78	2.85	2.9	0.002	0.40	0.0	0.03	16.97	0.00	2.209	5.36	1.45	1.3	98.7	0.0	3.58	0.37	0.62	0.82	2.78	12004	1520	4	0	0	0	0	logfile
✔	6C9i	7436	2024-04-11	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	0.81	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.002	0.40	0.0	0.04	15.11	0.00	2.243	4.68	1.13	0.0	100.0	0.0	4.03	2.43	0.72	0.89	3.55	23700	3087	24	0	0	0	0	logfile
✔	7QV6	14168	2024-04-05	2022-01-19	3.5	3.33	3.32	3.5	0.011	0.59	0.0	0.05	11.56	0.00	2.480	1.86	0.00	1.1	98.9	0.0	-1.85	0.39	0.86	5.72	3.5	0.002	0.40	0.0	0.06	11.88	0.00	2.320	1.65	0.79	0.0	100.0	0.0	0.64	0.40	0.40	0.86	5.54	4842	306	18	0	0	0	2556	logfile
✔	8FA2	28948	2024-04-05	2022-11-25	2.82	2.48	3.15	2.1	0.006	0.55	0.0	0.04	13.54	0.00	2.297	6.56	0.00	1.8	98.2	0.0	-0.12	0.76	0.79	0.72	2.0	0.003	0.41	0.0	0.03	14.28	0.00	2.276	8.68	0.67	0.0	100.0	0.0	5.58	0.34	0.76	0.79	0.70	2577	342	6	0	0	0	0	logfile
✔	7TC8	25805	2024-04-10	2021-12-23	2.4	2.46	—	2.5	0.008	0.68	0.0	0.05	17.52	0.00	1.659	12.50	3.31	2.3	97.7	0.0	0.38	0.74	0.86	5.19	2.5	0.002	0.41	0.0	0.04	17.26	0.00	1.889	19.46	1.91	1.8	98.2	0.0	2.10	0.28	0.74	0.86	5.02	20567	2113	8	0	4	0	3200	logfile
✔	7TC7	25804	2024-04-10	2021-12-23	2.9	2.75	—	2.9	0.007	0.58	0.0	0.04	13.89	0.00	1.792	14.53	0.17	2.3	97.7	0.0	1.00	0.72	0.86	4.97	2.9	0.002	0.41	0.0	0.04	15.77	0.00	1.945	16.73	1.40	2.1	97.9	0.0	1.68	0.31	0.73	0.87	4.30	20567	2113	8	0	4	0	3200	logfile
✔	8X84	38135	2024-04-12	2023-11-27	3.1	2.99	3.18	3.2	0.004	0.53	0.0	0.03	14.45	0.00	1.976	4.19	0.30	0.8	99.2	0.0	3.21	0.57	0.78	3.16	3.2	0.002	0.41	0.0	0.03	15.07	0.00	2.042	3.38	0.38	0.3	99.7	0.0	3.56	0.49	0.60	0.80	2.63	24534	1524	12	0	6	4	12444	logfile
✔	7TiK	25912	2024-04-05	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	7.94	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.003	0.42	0.0	0.04	16.39	0.00	2.243	8.33	1.35	0.6	99.4	0.0	6.01	0.91	0.79	0.81	1.38	2565	339	6	0	0	0	0	logfile
✔	8JMA	36411	2024-04-12	2023-06-04	2.5	2.43	2.54	2.6	0.004	0.51	0.0	0.04	16.39	0.00	2.210	4.35	0.61	1.3	98.7	0.0	3.05	0.61	0.81	3.53	2.6	0.002	0.42	0.0	0.03	16.45	0.00	2.187	3.70	0.61	1.3	98.7	0.0	3.33	0.19	0.60	0.81	3.52	24568	1524	8	0	4	0	12472	logfile
✔	7RZS	24776	2024-04-05	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.42	0.0	0.03	15.88	0.00	2.317	5.27	1.42	0.0	100.0	0.0	5.62	1.18	0.79	0.82	1.27	2445	324	6	0	0	0	0	logfile

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