Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8io9	35612	2024-04-11	2023-03-10	2.36	3.18	2.44	2.8	0.005	0.60	0.0	0.04	12.12	0.00	1.987	8.65	0.48	3.5	96.5	0.0	0.34	0.86	0.84	4.54	2.8	0.002	0.46	0.0	0.04	12.41	0.00	2.007	7.83	0.73	3.0	97.0	0.0	0.84	0.28	0.86	0.84	3.63	75744	9456	24	0	36	0	0	logfile
✔	8DMX	27548	2024-04-07	2022-07-08	3.37	3.66	3.43	3.6	0.003	0.59	0.0	0.04	13.99	0.00	2.105	6.01	0.00	2.3	97.7	0.0	0.17	0.55	0.79	2.06	3.6	0.002	0.54	0.0	0.04	15.94	0.00	2.005	3.73	1.83	2.5	97.5	0.0	-0.42	0.49	0.70	0.91	2.41	11748	1488	8	0	8	0	0	logfile
✔	8i6S	35205	2024-04-06	2023-01-29	4.4	4.82	4.39	4.4	0.006	1.39	2.0	0.06	16.40	0.01	2.073	4.55	0.97	4.1	95.7	0.2	-5.18	0.73	0.60	—	4.4	0.002	0.67	0.0	0.04	16.01	0.00	1.979	12.45	1.08	3.7	96.2	0.1	-0.07	0.51	0.74	0.63	—	8641	1125	7	0	4	0	0	logfile
✔	8i9H	35272	2024-04-06	2023-02-06	3.6	3.94	3.50	3.9	0.006	0.71	0.0	0.05	16.88	0.00	2.135	8.35	7.58	9.6	90.4	0.0	-4.33	0.67	0.82	2.13	4.0	0.002	0.69	0.0	0.04	16.66	0.00	2.168	6.54	3.06	5.6	94.4	0.0	-0.96	1.17	0.70	0.84	1.63	6514	780	9	0	13	0	0	logfile
✔	8KGY	37235	2024-04-11	2023-08-20	2.59	3.66	2.67	3.1	0.003	0.48	0.0	0.04	12.79	0.00	2.249	5.72	0.00	3.2	96.6	0.2	1.59	0.90	0.88	3.02	3.1	0.002	0.54	0.0	0.04	14.27	0.00	2.227	5.67	0.69	3.6	96.2	0.2	1.93	0.27	0.91	0.89	2.56	21846	2921	6	0	0	0	0	logfile
✔	8TWE	41667	2024-04-08	2023-08-21	2.55	3.04	2.52	2.9	0.003	0.48	0.0	0.04	10.13	0.00	1.425	1.05	0.13	0.5	99.5	0.0	1.05	0.76	0.87	5.13	2.9	0.002	0.47	0.0	0.04	13.28	0.00	2.171	2.63	0.40	1.0	99.0	0.0	0.99	0.61	0.77	0.89	4.68	13305	833	4	0	0	0	6622	logfile
✔	8D5A	27207	2024-04-13	2022-06-04	3.1	3.80	3.21	3.5	0.016	2.00	17.0	0.13	16.44	0.01	1.589	6.83	2.22	6.7	91.7	1.6	-2.19	0.85	0.86	3.15	3.5	0.002	0.67	0.0	0.04	14.15	0.00	2.156	6.10	1.95	5.1	94.7	0.2	-0.24	0.60	0.86	0.87	2.54	27711	3365	35	0	99	0	0	logfile
✔	8SEV	40430	2024-04-10	2023-04-10	3.17	3.33	3.18	3.3	0.003	0.53	0.0	0.04	14.62	0.00	2.236	6.19	0.00	3.1	96.9	0.0	1.76	0.60	0.79	2.51	3.3	0.002	0.49	0.0	0.04	15.95	0.00	2.215	6.92	0.27	2.8	97.2	0.0	1.89	0.48	0.60	0.81	1.98	20632	2504	8	0	8	0	0	logfile
✔	8BMD	16118	2024-04-06	2022-11-10	2.8	2.93	2.78	2.8	0.004	0.60	0.0	0.04	16.85	0.00	2.030	9.24	1.77	1.8	98.2	0.0	0.48	0.83	0.86	2.79	2.8	0.002	0.49	0.0	0.04	16.48	0.00	2.004	10.66	1.86	1.2	98.8	0.0	1.31	0.22	0.84	0.87	2.65	55532	7336	42	0	42	1184	0	logfile
✔	8FS7	29416	2024-04-11	2023-01-09	2.85	3.12	2.96	3.1	0.003	0.56	0.0	0.04	19.01	0.00	2.068	6.91	2.37	3.4	96.6	0.0	0.67	0.68	0.84	2.77	3.1	0.002	0.53	0.0	0.04	19.20	0.00	1.967	8.14	3.80	3.5	96.5	0.0	1.05	0.34	0.71	0.87	2.89	22195	2616	16	58	9	0	0	logfile
✔	8H9E	34564	2024-04-12	2022-10-25	2.53	2.86	2.66	2.9	0.008	0.80	0.0	0.05	14.54	0.01	1.956	5.74	0.00	2.7	97.2	0.1	-1.86	0.75	0.89	4.37	2.9	0.002	0.53	0.0	0.04	16.50	0.00	2.006	6.52	1.44	1.8	98.2	0.0	0.90	0.84	0.65	0.87	3.76	24214	3162	14	0	10	0	0	logfile
✔	8iW4	35762	2024-04-06	2023-03-29	3.49	2.95	3.34	3.3	0.003	0.81	2.0	0.06	14.91	0.00	2.143	9.81	1.39	4.6	95.4	0.0	-0.63	0.58	0.74	1.89	3.3	0.002	0.52	0.0	0.04	16.14	0.00	2.187	6.11	2.77	4.2	95.8	0.0	-0.20	0.97	0.63	0.81	1.67	7900	1045	6	0	1	0	0	logfile
✔	8EUW	28619	2024-04-10	2022-10-19	2.7	2.85	2.67	2.8	0.009	0.89	1.0	0.05	16.63	0.00	2.072	1.86	0.48	1.6	98.4	0.0	0.65	0.70	0.82	3.35	2.8	0.002	0.55	0.0	0.04	14.87	0.00	2.091	6.66	2.20	2.3	97.7	0.0	0.87	0.89	0.67	0.86	3.52	20040	2400	46	0	81	180	0	logfile
✔	8WU4	37850	2024-04-06	2023-10-20	3.3	3.97	3.44	3.7	0.002	0.53	0.0	0.04	13.98	0.00	2.254	7.48	0.09	0.7	99.3	0.0	1.79	0.90	0.89	1.51	3.7	0.002	0.51	0.0	0.04	14.79	0.00	2.234	9.76	0.91	0.8	99.2	0.0	2.12	0.25	0.91	0.89	1.33	54670	7364	14	0	0	0	0	logfile
✔	8DWX	27765	2024-04-16	2022-08-02	3.27	2.42	3.39	2.2	0.003	0.62	1.0	0.05	13.24	0.01	2.116	3.79	0.10	2.1	97.9	0.0	-0.27	0.56	0.79	3.27	2.2	0.002	0.61	0.0	0.04	14.48	0.01	2.134	3.59	2.16	3.7	96.3	0.0	-0.66	0.38	0.54	0.78	2.95	38228	4956	28	0	12	0	0	logfile
✔	8THi	41265	2024-04-07	2023-07-16	3.36	3.84	3.37	3.7	0.003	0.51	0.0	0.04	13.99	0.00	2.209	3.02	0.29	1.8	98.2	0.0	2.97	0.71	0.80	1.36	3.7	0.002	0.58	0.0	0.04	15.25	0.00	2.154	6.14	1.38	1.9	98.1	0.0	2.30	1.12	0.72	0.85	1.70	9519	1224	4	0	4	0	0	logfile
✔	7Yi2	33849	2024-04-08	2022-07-14	3.4	2.75	3.37	2.7	0.003	0.59	0.0	0.04	18.25	0.01	2.062	9.71	0.23	6.9	93.1	0.0	-0.99	0.75	0.77	2.10	2.7	0.002	0.54	0.0	0.04	19.03	0.00	2.077	9.55	3.13	6.2	93.8	0.0	-0.07	0.31	0.75	0.76	1.80	12140	1397	9	33	5	0	0	logfile
✔	8HAE	34586	2024-04-12	2022-10-26	4.55	4.75	4.64	4.6	0.009	1.04	0.0	0.07	10.84	0.01	1.994	6.14	0.27	8.3	91.7	0.0	-3.55	0.81	0.75	—	4.6	0.002	0.71	4.0	0.12	11.72	0.00	1.940	7.61	0.00	6.5	93.5	0.0	-1.80	1.33	0.80	0.74	—	26698	1690	2	0	0	0	13272	logfile
✔	7XY9	33514	2024-04-07	2022-06-01	2.12	2.29	2.22	2.3	0.002	0.54	0.0	0.05	17.43	0.00	1.988	4.59	1.67	4.0	96.0	0.0	0.43	0.78	0.88	5.01	2.3	0.002	0.57	0.0	0.05	17.26	0.00	1.946	5.12	1.39	4.4	95.6	0.0	0.19	0.85	0.75	0.87	5.26	10962	1376	12	0	12	574	0	logfile
✔	8J19	35914	2024-04-06	2023-04-12	3.23	3.65	3.37	3.6	0.005	0.63	1.0	0.04	15.96	0.00	2.220	5.65	0.74	1.9	98.1	0.0	0.90	0.65	0.84	3.13	3.6	0.002	0.54	0.0	0.04	16.24	0.00	2.189	6.73	3.06	2.1	97.9	0.0	0.86	0.92	0.63	0.84	2.79	8801	1129	6	0	1	0	0	logfile

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