Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5M6S	3451	2024-04-05	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.3	0.003	0.60	0.0	0.03	17.87	0.00	1.962	10.68	0.00	7.3	92.7	0.0	2.28	2.21	0.03	0.01	—	1593	98	1	0	0	0	793	logfile
✔	5MSH	3565	2024-04-05	2017-01-04	4.25	3.96	—	20.0	0.014	1.56	0.0	0.07	9.56	0.01	2.323	3.07	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.8	0.003	0.78	0.0	0.05	13.12	0.01	2.193	15.96	0.00	7.5	92.5	0.0	-1.32	1.97	0.04	0.15	—	4287	551	2	0	0	0	0	logfile
✔	7URi	26713	2024-04-05	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	30.06	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.007	1.42	0.0	0.07	28.72	0.01	2.070	25.42	0.00	0.0	0.0	0.0	—	2.08	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7UR5	26705	2024-04-05	2022-04-21	2.6	2.89	2.82	2.9	0.008	1.48	0.0	0.11	29.59	0.01	2.204	2.44	0.00	0.0	0.0	0.0	—	0.05	0.58	—	2.9	0.005	0.89	0.0	0.05	27.26	0.01	2.007	16.72	0.00	0.0	0.0	0.0	—	1.85	0.08	0.67	—	5709	0	3	270	0	0	0	logfile
✔	8J5Y	33733	2024-04-07	2023-04-24	3.07	3.50	3.24	20.0	0.004	0.84	0.0	0.05	13.88	0.01	2.153	12.97	0.00	6.0	93.7	0.3	-1.55	0.08	0.00	0.39	3.4	0.003	0.74	0.0	0.04	15.95	0.00	2.112	15.74	2.42	7.6	92.3	0.1	-1.26	1.56	0.12	0.06	0.26	10905	1389	4	0	0	0	0	logfile
✔	7V66	31736	2024-04-15	2021-08-19	1.89	1.85	—	5.2	0.006	1.02	0.0	0.07	12.14	0.01	1.929	1.89	2.07	1.9	98.0	0.0	1.97	0.09	0.05	1.38	4.1	0.006	1.44	8.0	0.04	15.60	0.01	2.233	16.30	1.64	4.1	95.9	0.0	3.25	1.24	0.14	0.12	-0.77	33216	4128	24	0	0	0	0	logfile
✔	7URM	26714	2024-04-05	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	28.63	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.15	0.0	0.05	27.88	0.01	2.001	29.60	0.00	0.0	0.0	0.0	—	1.67	0.15	0.53	—	1905	0	1	90	0	0	0	logfile
✔	5M5H	4155	2024-04-05	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.003	0.85	0.0	0.05	12.37	0.01	2.369	17.88	0.00	7.9	92.1	0.0	-0.80	1.84	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	7ASK	11895	2024-04-08	2020-10-27	4.3	4.39	—	4.3	0.028	2.99	47.0	0.22	18.83	0.02	0.766	14.21	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.015	1.13	2.0	0.05	15.40	0.01	2.076	16.90	0.00	18.4	80.1	1.5	-3.44	1.30	0.18	0.61	—	12285	1523	1	0	2	0	0	logfile
✔	8CK0	16688	2024-04-05	2023-02-14	3.8	3.83	3.70	3.8	0.005	0.80	0.0	0.05	16.63	0.01	2.259	15.81	0.00	5.3	94.7	0.0	0.79	0.17	0.78	1.47	3.8	0.003	0.65	0.0	0.04	17.84	0.00	2.287	11.79	3.38	3.8	96.2	0.0	2.14	0.70	0.18	0.78	1.72	3762	478	1	0	0	0	0	logfile
✔	8TEK	41189	2024-04-09	2023-07-06	3.6	2.85	3.88	3.4	0.015	0.65	0.0	0.04	15.86	0.00	2.065	14.54	0.00	3.9	96.0	0.1	-1.18	0.16	0.51	0.46	2.7	0.015	0.79	0.0	0.04	19.31	0.00	2.078	20.47	3.65	4.4	95.5	0.1	-0.11	2.30	0.19	0.67	0.47	15250	1817	10	0	0	0	0	logfile
✔	8ACC	15346	2024-04-05	2022-07-05	2.9	3.30	2.80	3.3	0.002	0.70	0.0	0.05	13.62	0.00	2.200	6.25	0.00	11.4	86.5	2.2	-2.46	0.20	0.81	4.38	3.3	0.003	0.62	0.0	0.04	17.49	0.00	2.230	5.95	3.29	10.9	88.2	0.9	-1.53	0.63	0.20	0.83	3.08	1779	231	2	5	0	0	0	logfile
✔	8ACB	15345	2024-04-05	2022-07-05	2.6	2.88	1.65	2.9	0.004	0.71	0.0	0.08	15.24	0.00	2.257	7.47	0.00	7.8	92.2	0.0	-0.81	0.21	0.81	4.10	2.9	0.003	0.59	0.0	0.04	17.97	0.00	2.229	6.61	1.14	8.7	91.3	0.0	-0.45	1.20	0.20	0.84	3.77	1815	220	2	5	0	0	0	logfile
✔	7X34	32978	2024-04-05	2022-02-27	3.1	5.47	3.73	3.1	0.009	1.17	0.0	0.05	24.84	0.01	2.316	5.71	0.00	3.1	96.9	0.0	-2.86	0.21	0.78	1.18	3.1	0.005	0.79	0.0	0.04	25.46	0.00	2.101	32.71	1.30	2.0	98.0	0.0	-0.13	0.59	0.21	0.77	1.18	2762	100	2	94	0	0	0	logfile
✔	3JBS	6478	2024-04-05	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.64	0.0	0.04	17.82	0.00	2.204	8.27	3.29	2.9	97.1	0.0	0.53	1.83	0.21	0.82	3.71	1401	175	1	0	0	0	0	logfile
✔	6Z3T	11064	2024-04-05	2020-05-21	2.69	3.99	3.36	3.9	0.010	1.90	1.0	0.07	19.16	0.01	2.284	6.72	1.60	9.6	90.2	0.2	-5.84	0.21	0.59	1.55	3.9	0.003	1.12	0.0	0.04	20.17	0.00	2.159	12.48	2.67	8.2	91.8	0.0	-1.88	0.83	0.21	0.66	1.29	3608	441	4	0	21	0	0	logfile
✔	5TC1	8397	2024-04-09	2016-09-13	3.6	3.60	—	3.6	0.006	0.87	0.0	0.08	22.12	0.01	1.126	33.79	0.27	3.3	96.7	0.0	-3.80	0.19	0.77	4.30	3.6	0.004	0.60	0.0	0.04	20.86	0.00	2.114	7.65	3.66	4.0	96.0	0.0	-0.50	0.67	0.21	0.84	2.93	15393	1352	10	242	0	0	0	logfile
✔	8TiF	41286	2024-04-05	2023-07-19	3.89	3.95	3.71	4.1	0.005	0.55	0.0	0.04	17.04	0.00	2.317	8.78	1.02	1.6	98.4	0.0	0.15	0.23	0.85	1.30	4.1	0.002	0.42	0.0	0.04	16.97	0.00	2.337	4.94	2.04	1.6	98.4	0.0	0.98	0.36	0.22	0.85	3.19	889	131	1	0	0	0	0	logfile
✔	7VZ3	32219	2024-04-09	2021-11-15	2.46	2.36	2.43	19.0	0.009	1.08	2.0	0.07	12.80	0.01	2.203	4.37	0.26	5.4	94.5	0.1	-1.44	0.12	0.02	0.32	2.2	0.005	0.92	1.0	0.05	14.34	0.01	1.998	15.23	1.79	6.2	93.7	0.1	-1.36	1.71	0.22	0.15	0.55	17415	2256	3	0	0	0	0	logfile
✔	8UoY	42441	2024-04-08	2023-10-20	3.4	3.52	3.51	3.4	0.016	2.25	10.0	0.11	17.12	0.02	2.532	0.83	6.89	12.1	85.3	2.6	-3.89	0.21	0.24	0.07	3.4	0.003	0.74	0.0	0.04	17.69	0.00	1.889	17.22	4.99	9.2	90.7	0.1	-3.33	0.86	0.22	0.25	0.30	13188	872	2	0	0	0	6544	logfile

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