Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N9Y	24264	2024-04-06	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.2	0.003	1.01	0.0	0.00	4.81	0.00	2.550	7.73	0.00	18.2	81.3	0.5	-4.24	2.61	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	7N9Q	24259	2024-04-06	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.00	0.0	0.00	5.05	0.00	2.580	6.76	0.00	12.3	86.7	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	7TKH	25969	2024-04-10	2022-01-17	4.4	7.29	4.45	4.2	0.019	2.19	0.0	0.00	6.81	0.01	2.385	0.08	0.00	3.9	94.7	1.4	-0.35	0.59	0.62	—	4.2	0.018	1.32	0.0	0.00	7.42	0.01	1.974	32.32	0.00	15.1	84.5	0.3	-2.28	1.70	0.83	0.84	—	20228	5056	27	0	0	0	0	logfile
✔	7TKP	25977	2024-04-10	2022-01-17	4.6	7.57	4.97	4.4	0.019	2.20	0.0	0.00	6.68	0.01	2.352	0.12	0.00	4.2	94.5	1.3	-0.50	0.60	0.63	—	4.4	0.004	0.83	0.0	0.00	5.67	0.00	2.069	13.64	0.00	9.3	90.5	0.2	-0.09	0.76	0.78	0.81	—	20228	5056	27	0	0	0	0	logfile
✔	7JG7	22313	2024-04-10	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.006	1.16	0.0	0.00	7.34	0.01	2.119	4.50	0.00	14.7	85.1	0.1	-2.00	1.65	0.74	0.72	—	19316	4818	20	0	11	0	0	logfile
✔	8GTD	34250	2024-04-13	2022-09-08	4.7	4.27	4.25	4.2	0.014	2.16	0.0	0.00	5.49	0.01	2.285	3.73	0.00	8.4	90.0	1.6	0.41	0.50	0.44	—	4.2	0.004	0.93	0.0	0.00	6.20	0.00	2.228	4.76	0.00	19.1	80.2	0.7	-2.63	1.26	0.52	0.51	—	29580	7392	24	0	0	0	0	logfile
✔	7TJY	25946	2024-04-10	2022-01-17	3.8	4.84	3.78	3.6	0.020	2.29	0.0	0.00	6.75	0.01	2.333	0.12	0.00	4.3	94.3	1.5	-0.54	0.59	0.68	—	3.6	0.004	0.79	0.0	0.00	4.84	0.00	2.161	3.93	0.00	9.8	90.0	0.3	0.68	1.48	0.82	0.86	—	20228	5056	27	0	0	0	0	logfile
✔	7TK8	25960	2024-04-10	2022-01-17	4.7	7.79	12.86	4.4	0.019	2.21	0.0	0.00	6.68	0.01	2.390	0.08	0.00	4.1	94.4	1.5	-0.46	0.60	0.62	—	4.4	0.007	1.06	0.0	0.00	6.46	0.01	1.965	24.73	0.00	11.5	88.2	0.3	-0.96	1.58	0.81	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7TKo	25976	2024-04-10	2022-01-17	4.8	7.71	5.39	4.4	0.019	2.23	0.0	0.00	6.74	0.01	2.314	0.12	0.00	4.8	93.9	1.4	-0.54	0.62	0.65	—	4.4	0.004	0.84	0.0	0.00	5.80	0.00	2.139	12.52	0.00	10.1	89.6	0.2	-0.46	0.84	0.84	0.82	—	20229	5056	27	0	0	0	0	logfile
✔	7TKG	25968	2024-04-10	2022-01-17	4.5	7.60	4.79	4.2	0.019	2.20	0.0	0.00	6.95	0.01	2.361	0.08	0.00	4.3	94.2	1.5	-0.60	0.58	0.61	—	4.3	0.007	1.14	0.0	0.00	7.61	0.01	2.015	33.28	0.00	19.7	80.0	0.3	-3.26	2.09	0.77	0.80	—	20228	5056	27	0	0	0	0	logfile
✔	6TNG	10532	2024-04-06	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.004	0.85	0.0	0.00	6.39	0.00	2.200	10.87	0.00	22.8	77.1	0.1	-3.08	0.35	0.76	0.72	—	8240	2060	2	0	0	0	0	logfile
✔	7JG6	22312	2024-04-10	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.004	0.90	0.0	0.00	5.83	0.00	2.226	1.17	0.00	11.4	88.6	0.0	-0.80	1.65	0.71	0.69	—	19320	4819	20	0	11	0	0	logfile
✔	7DZW	30915	2024-04-08	2021-01-26	3.45	4.19	3.55	3.3	0.019	2.27	0.0	0.00	4.81	0.01	2.240	2.28	0.00	5.1	93.3	1.6	-1.27	0.44	0.25	—	3.3	0.003	0.81	0.0	0.00	4.68	0.00	2.178	3.51	0.00	11.9	88.0	0.1	-2.05	1.99	0.77	0.73	—	13452	3363	3	0	0	0	0	logfile
✔	7DZY	30921	2024-04-10	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	3.14	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.83	0.0	0.00	5.21	0.00	2.105	3.02	0.00	10.5	89.3	0.2	-2.46	2.13	0.71	0.70	—	18708	4677	9	0	0	0	0	logfile
✔	5VLZ	8709	2024-04-14	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.66	—	4.4	0.002	0.73	0.0	0.00	4.75	0.00	2.276	0.95	0.00	4.8	95.2	0.0	-0.40	2.02	0.83	0.78	—	96897	24179	181	0	0	0	0	logfile
✔	7TK0	25948	2024-04-10	2022-01-17	4.4	6.63	4.39	4.1	0.019	2.21	0.0	0.00	6.55	0.01	2.394	0.08	0.00	3.9	94.5	1.5	-0.40	0.58	0.62	—	4.1	0.003	0.80	0.0	0.00	5.24	0.00	2.105	7.94	0.00	8.9	90.9	0.3	-0.45	0.81	0.83	0.81	—	20220	5054	27	0	0	0	0	logfile
✔	7TJZ	25947	2024-04-10	2022-01-17	4.4	7.00	4.54	4.2	0.019	2.21	0.0	0.00	6.67	0.01	2.384	0.19	0.00	4.2	94.2	1.6	-0.41	0.58	0.63	—	4.2	0.017	1.19	0.0	0.00	6.51	0.01	2.047	16.64	0.00	13.2	86.4	0.3	-1.19	0.80	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7TKM	25974	2024-04-10	2022-01-17	4.5	7.58	4.88	4.3	0.019	2.22	0.0	0.00	6.78	0.01	2.385	0.12	0.00	4.3	94.2	1.5	-0.44	0.59	0.59	—	4.3	0.004	0.82	0.0	0.00	5.62	0.00	2.105	12.83	0.00	9.6	90.0	0.3	-0.78	1.55	0.82	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7TKQ	25978	2024-04-10	2022-01-17	4.5	7.57	4.53	4.3	0.019	2.21	0.0	0.00	6.72	0.01	2.371	0.08	0.00	4.0	94.5	1.5	-0.48	0.59	0.61	—	4.3	0.009	1.21	0.0	0.00	7.52	0.01	1.933	34.86	0.00	13.6	85.9	0.5	-2.21	0.83	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7N95	24250	2024-04-06	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.004	1.01	0.0	0.00	4.97	0.00	2.503	6.53	0.00	18.1	81.7	0.2	-3.27	1.81	0.85	0.83	—	7299	2433	2	0	0	0	0	logfile

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