Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8AWT	15696	2024-04-05	2022-08-30	3.0	3.11	2.92	3.1	0.003	0.47	0.0	0.04	9.30	0.00	2.671	4.07	0.00	0.0	100.0	0.0	-4.11	0.52	0.86	6.78	3.1	0.004	0.53	0.0	0.04	10.85	0.00	2.622	0.27	0.00	1.2	98.8	0.0	-3.86	1.01	0.53	0.89	6.82	1910	260	10	0	10	0	0	logfile
✔	8PPo	17806	2024-04-05	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.53	0.0	0.06	14.00	0.00	2.289	0.29	0.52	0.0	100.0	0.0	1.18	0.37	0.50	0.88	5.44	1696	240	16	0	0	0	0	logfile
✔	6M54	30084	2024-04-15	2020-03-09	2.4	2.57	—	2.5	0.012	1.15	0.0	0.07	14.96	0.01	2.591	0.71	0.00	4.1	95.9	0.0	-0.37	0.69	0.85	5.34	2.5	0.004	0.63	0.0	0.04	16.56	0.00	2.531	0.51	1.30	4.1	95.9	0.0	3.51	0.27	0.81	0.91	3.76	33382	4104	38	0	6	8	0	logfile
✔	8CG3	16628	2024-04-05	2023-02-03	2.39	2.55	2.34	2.5	0.012	1.69	0.0	0.08	14.77	0.01	2.619	1.73	0.00	2.3	97.7	0.0	-4.90	0.52	0.96	8.23	2.5	0.004	0.83	0.0	0.04	16.02	0.00	2.642	0.52	0.00	1.8	98.2	0.0	-4.79	0.31	0.51	0.94	7.31	3040	445	5	0	0	0	0	logfile
✔	7ZiR	14738	2024-04-05	2022-04-08	2.5	2.51	2.04	2.7	0.002	0.34	0.0	0.03	9.02	0.00	2.317	1.65	0.00	2.0	98.0	0.0	-3.82	0.48	0.90	7.46	2.7	0.003	0.46	0.0	0.04	12.13	0.00	2.312	0.55	0.00	3.7	96.3	0.0	-3.81	1.03	0.51	0.93	7.87	2120	255	10	0	0	50	0	logfile
✔	7JG8	22314	2024-04-10	2020-07-18	3.3	2.35	3.37	3.3	0.009	1.50	0.0	0.20	9.46	0.01	2.424	0.51	0.00	3.2	96.6	0.2	-1.30	0.62	0.55	—	3.4	0.004	0.90	0.0	0.08	7.14	0.00	2.237	0.59	0.00	10.4	89.6	0.1	-0.98	1.26	0.72	0.71	—	19573	4827	26	0	7	0	0	logfile
✔	8DXR	27774	2024-04-07	2022-08-02	4.0	4.31	4.01	4.2	0.004	0.81	0.0	0.04	5.27	0.00	2.255	1.54	0.00	11.6	88.3	0.1	-0.80	0.67	0.71	—	4.2	0.002	0.51	0.0	0.04	3.77	0.00	2.420	0.60	0.00	8.3	91.6	0.1	1.47	0.34	0.67	0.71	—	10435	2101	7	0	0	0	0	logfile
✔	8P34	17383	2024-04-05	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.003	0.53	0.0	0.05	13.66	0.00	2.674	0.69	1.23	4.3	95.7	0.0	-1.62	0.28	0.28	0.88	6.38	711	94	1	0	0	0	0	logfile
✔	8CGH	16643	2024-04-05	2023-02-04	2.68	2.73	2.52	2.7	0.011	1.54	0.0	0.08	16.67	0.01	2.629	3.30	0.00	5.1	92.3	2.6	-5.57	0.54	0.94	7.81	2.7	0.005	0.95	0.0	0.05	17.40	0.00	2.626	0.78	0.40	5.6	94.4	0.0	-4.95	0.93	0.53	0.93	6.48	2710	400	5	0	0	0	0	logfile
✔	8CGG	16642	2024-04-05	2023-02-04	2.5	2.67	2.48	2.7	0.011	1.67	0.0	0.08	16.62	0.01	2.637	6.41	0.00	11.5	88.5	0.0	-5.62	0.55	0.94	8.29	2.7	0.004	0.82	0.0	0.04	17.24	0.00	2.623	0.78	0.40	4.9	95.1	0.0	-4.88	0.93	0.51	0.92	7.91	2710	400	5	0	0	0	0	logfile
✔	7MJP	23881	2024-04-08	2021-04-20	4.2	4.40	—	4.3	0.008	1.11	0.0	0.07	10.54	0.01	1.477	2.76	0.00	9.1	90.9	0.0	-1.16	0.51	0.65	—	4.4	0.002	0.62	0.0	0.05	8.27	0.00	2.278	0.82	0.00	8.1	91.9	0.0	-0.47	0.45	0.56	0.70	—	14163	2818	10	0	8	0	0	logfile
✔	8Q2K	18111	2024-04-06	2023-08-02	2.88	2.65	2.79	2.8	0.011	1.80	0.0	0.07	10.49	0.01	2.538	0.43	0.00	4.1	95.9	0.0	-1.81	0.28	0.75	5.37	2.8	0.003	0.51	0.0	0.05	17.02	0.00	2.146	0.85	0.51	0.0	100.0	0.0	-1.78	3.23	0.38	0.85	4.69	7032	450	6	0	0	0	3588	logfile
✔	7NCA	12264	2024-04-07	2021-01-28	3.47	3.58	3.04	3.6	0.012	2.04	0.0	0.08	10.64	0.01	2.645	0.00	0.19	5.5	94.5	0.0	-2.04	0.73	0.85	4.45	3.7	0.002	0.51	0.0	0.05	13.24	0.00	2.471	0.86	1.74	3.7	96.3	0.0	-2.97	0.75	0.69	0.84	3.63	10428	732	12	0	0	0	5376	logfile
✔	8Q8W	18263	2024-04-06	2023-08-19	2.85	2.92	2.74	2.9	0.011	1.75	0.0	0.09	11.10	0.01	2.483	0.00	0.00	2.9	97.1	0.0	-1.38	0.29	0.78	6.35	2.9	0.002	0.47	0.0	0.05	15.76	0.00	2.331	0.91	0.54	0.7	99.3	0.0	-0.61	1.98	0.39	0.89	6.58	6618	429	6	0	0	0	3372	logfile
✔	5VLZ	8709	2024-04-14	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.66	—	4.4	0.002	0.73	0.0	0.00	4.75	0.00	2.276	0.95	0.00	4.8	95.2	0.0	-0.40	2.02	0.83	0.78	—	96897	24179	181	0	0	0	0	logfile
✔	6M52	30083	2024-04-15	2020-03-09	2.6	2.82	—	2.8	0.009	0.94	0.0	0.06	15.32	0.00	2.390	0.63	0.00	4.7	95.3	0.0	-0.23	0.69	0.86	3.58	2.8	0.004	0.60	0.0	0.04	17.49	0.00	2.343	0.97	1.75	4.0	96.0	0.0	3.39	0.28	0.79	0.91	2.41	33382	4104	38	0	6	8	0	logfile
✔	8Q8C	18250	2024-04-06	2023-08-18	1.92	1.98	1.90	2.0	0.011	1.66	0.0	0.08	10.69	0.01	2.505	0.00	0.27	1.2	98.8	0.0	-1.44	0.21	0.65	7.52	1.9	0.003	0.50	0.0	0.05	15.18	0.00	2.146	1.06	0.81	1.4	98.6	0.0	-0.92	1.43	0.39	0.90	7.80	6618	429	6	0	0	0	3372	logfile
✔	8DXQ	27773	2024-04-07	2022-08-02	3.8	4.02	3.81	3.9	0.002	0.52	0.0	0.04	4.66	0.00	2.301	1.14	0.00	10.1	89.9	0.0	0.26	0.65	0.71	—	3.9	0.004	0.64	0.0	0.04	5.26	0.00	2.238	1.07	0.00	12.2	87.7	0.0	0.18	0.28	0.64	0.69	—	10435	2101	7	0	0	0	0	logfile
✔	7QV5	14167	2024-04-05	2022-01-19	3.0	3.03	1.88	3.0	0.010	0.44	0.0	0.06	9.44	0.00	2.689	1.08	0.00	6.2	93.8	0.0	-2.64	0.46	0.86	7.89	3.1	0.002	0.36	0.0	0.06	12.41	0.00	2.576	1.08	0.00	2.1	97.9	0.0	-1.49	0.86	0.50	0.90	6.84	5562	342	27	0	18	0	2997	logfile
✔	7F92	31495	2024-04-11	2021-07-03	3.1	3.23	3.05	3.2	0.008	1.29	0.0	0.05	16.75	0.01	2.271	0.63	2.29	3.0	97.0	0.0	-6.40	0.75	0.90	3.09	3.2	0.002	0.53	0.0	0.03	15.33	0.00	2.288	1.12	1.81	1.2	98.8	0.0	1.39	0.30	0.72	0.90	2.63	21240	2352	36	0	132	264	0	logfile

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