Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y1R	33571	2024-04-06	2022-06-08	4.01	2.49	4.09	3.9	0.003	0.70	0.0	0.04	17.91	0.00	2.227	8.79	0.00	5.8	94.2	0.0	-2.79	0.59	0.55	—	2.1	0.003	0.78	0.0	0.04	13.19	0.00	2.160	11.89	0.00	7.8	92.1	0.1	-2.62	0.70	0.63	0.62	—	8565	1041	11	0	20	0	0	logfile
✔	6VD7	21150	2024-04-09	2019-12-23	3.02	3.29	—	3.3	0.008	0.76	0.0	0.05	13.38	0.00	2.284	6.84	0.78	11.7	88.3	0.0	-2.54	0.69	0.85	2.53	3.3	0.004	0.67	0.0	0.04	15.67	0.00	2.190	7.53	3.28	8.1	91.9	0.0	0.36	0.36	0.68	0.85	2.36	16506	2079	7	0	0	0	0	logfile
✔	7PMY	13544	2024-04-07	2021-09-04	3.8	4.01	3.76	3.9	0.002	0.46	0.0	0.04	9.15	0.00	2.008	5.14	1.40	2.0	97.9	0.2	0.55	0.66	0.79	2.91	3.9	0.003	0.54	0.0	0.04	12.41	0.00	1.991	7.53	2.28	3.4	96.6	0.0	0.74	0.78	0.65	0.80	2.02	10499	659	2	0	0	0	5276	logfile
✔	7X2V	32972	2024-04-06	2022-02-26	3.09	2.34	—	2.1	0.007	0.93	0.0	0.05	11.89	0.01	2.115	6.17	0.10	5.5	94.5	0.0	-0.89	0.65	0.60	1.40	2.1	0.003	0.67	0.0	0.04	14.18	0.00	2.215	12.46	2.08	5.3	94.7	0.0	0.08	0.45	0.63	0.59	1.03	8755	1122	5	0	0	0	0	logfile
✔	7SP6	25366	2024-04-06	2021-11-02	3.1	3.58	—	3.5	0.004	0.58	0.0	0.04	14.43	0.00	2.308	5.40	0.00	1.5	98.5	0.0	1.72	0.61	0.75	1.78	3.5	0.002	0.55	0.0	0.04	15.98	0.00	2.170	6.92	2.56	2.5	97.5	0.0	1.08	0.64	0.63	0.81	2.46	5957	733	5	0	3	0	0	logfile
✔	7JG6	22312	2024-04-10	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.004	0.90	0.0	0.00	5.83	0.00	2.226	1.17	0.00	11.4	88.6	0.0	-0.80	1.65	0.71	0.69	—	19320	4819	20	0	11	0	0	logfile
✔	7VUi	32129	2024-04-07	2021-11-02	3.3	2.40	—	3.2	0.003	0.63	0.0	0.04	14.88	0.00	2.165	10.92	0.00	4.1	95.8	0.1	-0.34	0.73	0.71	1.24	2.2	0.003	0.63	0.0	0.04	16.89	0.00	2.020	11.83	2.79	3.8	96.1	0.1	-0.11	0.41	0.75	0.76	1.64	8287	1034	7	0	3	0	0	logfile
✔	7RB2	24392	2024-04-14	2021-07-05	3.27	3.28	—	3.2	0.008	0.74	0.0	0.05	14.45	0.00	2.075	7.71	0.33	5.1	94.9	0.0	-1.06	0.74	0.85	4.44	3.2	0.002	0.51	0.0	0.04	15.53	0.00	2.266	5.14	0.49	2.0	98.0	0.0	0.35	3.65	0.76	0.84	3.60	16386	2082	6	0	0	0	0	logfile
✔	7LH3	23335	2024-04-07	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.71	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.003	0.61	0.0	0.04	10.57	0.00	2.271	9.94	0.00	2.4	97.6	0.0	1.82	1.10	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile
✔	7QKR	14049	2024-04-07	2021-12-18	3.2	3.37	3.13	3.3	0.007	0.86	0.0	0.06	15.13	0.01	2.084	6.53	0.40	1.8	98.2	0.0	0.20	0.73	0.88	2.71	3.3	0.003	0.49	0.0	0.04	15.63	0.00	2.047	4.21	1.09	1.8	98.2	0.0	0.93	0.34	0.73	0.89	2.15	9403	1199	1	0	4	0	0	logfile
✔	8A3B	15110	2024-04-08	2022-06-07	3.1	2.31	2.85	2.9	0.003	0.55	0.0	0.03	14.17	0.00	2.091	4.59	0.00	0.9	99.1	0.0	2.21	0.73	0.72	2.28	2.1	0.003	0.54	0.0	0.04	16.19	0.00	2.180	6.76	1.88	1.5	98.5	0.0	2.39	0.46	0.74	0.77	2.10	14448	1792	7	0	0	0	0	logfile
✔	6X33	22016	2024-04-07	2020-05-21	4.2	4.35	—	4.3	0.001	0.37	0.0	0.03	9.39	0.00	2.304	3.24	0.00	1.9	98.1	0.0	-4.22	0.55	0.69	—	4.3	0.002	0.61	0.0	0.04	11.64	0.00	2.094	8.35	0.08	2.9	97.1	0.0	0.38	0.62	0.58	0.72	—	112372	14796	16	0	1436	0	0	logfile
✔	8BMW	16126	2024-04-13	2022-11-11	3.5	4.40	—	4.0	0.003	0.54	1.0	0.04	12.90	0.00	2.196	11.99	0.49	6.1	93.8	0.1	0.69	0.90	0.85	0.96	4.0	0.003	0.72	0.0	0.04	15.73	0.00	2.092	18.81	3.69	6.0	93.8	0.1	0.18	0.80	0.90	0.85	0.70	28658	3475	15	48	0	0	0	logfile
✔	7JGB	22320	2024-04-08	2020-07-18	3.5	2.38	3.52	3.7	0.007	0.64	0.0	0.04	13.53	0.01	2.372	3.93	0.45	1.9	98.1	0.0	-0.15	0.66	0.70	2.65	3.7	0.003	0.64	0.0	0.04	15.15	0.00	2.131	9.36	3.12	1.9	98.1	0.0	4.52	1.13	0.67	0.70	1.73	7261	1022	12	0	0	0	0	logfile
✔	7JG9	22315	2024-04-10	2020-07-18	3.4	2.37	3.49	3.4	0.009	1.56	0.0	0.20	9.66	0.01	2.424	0.51	0.00	2.9	96.8	0.3	-1.25	0.61	0.54	—	2.3	0.005	1.01	0.0	0.10	7.81	0.00	2.245	2.64	0.00	14.8	85.1	0.1	-1.49	1.31	0.72	0.71	—	19569	4826	26	0	7	0	0	logfile
✔	7V69	31739	2024-04-07	2021-08-20	3.4	2.24	—	2.0	0.003	0.65	0.0	0.04	12.64	0.00	2.096	13.28	0.00	2.9	97.1	0.0	-2.02	0.68	0.64	2.22	2.0	0.003	0.62	0.0	0.04	15.01	0.00	2.101	14.88	3.58	4.2	95.8	0.0	-0.95	1.13	0.70	0.68	2.06	8539	1122	5	0	0	0	0	logfile
✔	7oDF	12827	2024-04-06	2021-04-29	2.66	3.20	—	3.1	0.003	0.49	0.0	0.04	19.38	0.00	1.952	6.12	0.00	1.4	98.6	0.0	1.47	0.75	0.83	3.58	3.1	0.003	0.51	0.0	0.04	20.22	0.00	2.019	7.47	2.74	2.3	97.7	0.0	1.86	0.89	0.69	0.80	3.23	6847	703	7	78	2	5	0	logfile
✔	5U07	8477	2024-04-13	2016-11-23	3.8	3.94	—	3.8	0.010	1.35	5.0	0.07	14.70	0.01	1.958	28.98	2.31	4.8	94.0	1.1	-2.19	0.78	0.77	1.62	3.8	0.003	0.73	0.0	0.04	17.35	0.00	2.078	16.23	3.53	3.9	96.0	0.1	0.09	2.59	0.79	0.81	1.43	27681	3310	14	93	0	0	0	logfile
✔	6PWC	20505	2024-04-05	2019-07-22	4.9	5.55	—	4.5	0.003	0.67	0.0	0.05	4.68	0.01	2.345	2.19	0.00	1.3	98.7	0.0	-0.09	0.61	0.67	—	4.6	0.004	0.75	0.0	0.04	6.37	0.00	2.094	19.59	0.00	7.2	92.8	0.0	-0.38	1.57	0.61	0.59	—	5879	1055	5	0	0	0	0	logfile
✔	7Fii	31598	2024-04-07	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	4.1	0.003	0.61	0.0	0.04	9.62	0.00	2.261	5.54	0.00	3.8	96.2	0.0	0.54	0.75	0.66	0.75	—	8765	1522	6	0	0	0	0	logfile

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