Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RZS	24776	2024-04-05	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.42	0.0	0.03	15.88	0.00	2.317	5.27	1.42	0.0	100.0	0.0	5.62	1.18	0.79	0.82	1.27	2445	324	6	0	0	0	0	logfile
✔	8CZi	27098	2024-04-05	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.19	0.00	2.148	5.65	1.35	0.0	100.0	0.0	5.64	0.85	0.82	0.84	1.98	2550	339	6	0	0	0	0	logfile
✔	7RZV	24779	2024-04-05	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	16.04	0.00	2.237	5.05	1.35	0.0	100.0	0.0	5.77	0.88	0.83	0.83	1.74	2562	339	6	0	0	0	0	logfile
✔	7RZT	24777	2024-04-05	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.53	0.00	2.337	5.44	0.35	0.0	100.0	0.0	6.28	0.23	0.80	0.83	2.93	2451	324	6	0	0	0	0	logfile
✔	6LHV	0900	2024-04-08	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.010	1.38	0.0	0.05	6.64	0.00	2.051	53.25	0.00	0.0	0.0	0.0	—	3.58	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	6LHW	0901	2024-04-08	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.29	0.0	0.04	6.56	0.00	2.027	44.00	0.00	0.0	0.0	0.0	—	3.20	0.83	0.64	—	7644	0	3	0	1541	0	0	logfile
✔	7R6M	24282	2024-04-06	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	25.58	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.85	0.0	0.04	25.53	0.01	1.757	17.07	0.00	0.0	0.0	0.0	—	0.18	0.55	0.73	—	7755	0	3	362	13	0	0	logfile
✔	7RZU	24778	2024-04-05	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.003	0.54	0.0	0.03	15.53	0.00	2.199	7.70	2.11	0.0	100.0	0.0	5.17	0.52	0.80	0.81	1.81	2439	324	6	0	0	0	0	logfile
✔	7RZR	24775	2024-04-05	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.003	0.32	0.0	0.03	15.17	0.00	2.285	5.04	0.35	0.0	100.0	0.0	6.38	0.31	0.82	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	8TJU	41311	2024-04-07	2023-07-24	3.46	4.75	3.48	3.4	0.006	0.67	0.0	0.04	25.59	0.01	1.874	27.33	0.00	0.0	0.0	0.0	—	0.93	0.86	—	3.4	0.008	0.70	0.0	0.04	24.91	0.01	1.784	28.62	0.00	0.0	0.0	0.0	—	0.32	0.94	0.91	—	8771	0	2	409	27	0	0	logfile
✔	8TJV	41312	2024-04-07	2023-07-24	2.99	3.53	2.99	3.1	0.006	0.61	0.0	0.04	24.19	0.00	1.526	10.47	0.00	0.0	0.0	0.0	—	0.91	0.89	—	3.1	0.008	0.70	0.0	0.04	23.53	0.01	1.086	12.37	0.00	0.0	0.0	0.0	—	0.88	0.92	0.92	—	8778	0	2	409	32	0	0	logfile
✔	7R6N	24283	2024-04-06	2021-06-22	4.1	3.51	—	3.7	0.006	0.96	0.0	0.04	25.04	0.01	2.036	3.68	0.00	0.0	0.0	0.0	—	0.56	0.75	—	3.7	0.006	0.82	0.0	0.04	24.95	0.01	1.770	17.37	0.00	0.0	0.0	0.0	—	1.26	0.58	0.76	—	7588	0	1	354	12	0	0	logfile
✔	8oi0	16886	2024-04-05	2023-03-21	2.9	2.98	2.82	3.0	0.015	1.31	0.0	1.26	30.75	0.00	2.037	4.24	0.00	0.0	100.0	0.0	-3.25	0.47	0.85	5.73	2.9	0.004	0.55	0.0	0.06	20.05	0.00	2.218	1.35	0.76	0.0	100.0	0.0	-3.09	1.04	0.46	0.85	4.21	2784	312	24	0	24	0	0	logfile
✔	6UES	20755	2024-04-05	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	26.31	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.89	0.0	0.04	27.66	0.01	1.797	37.47	0.00	0.0	0.0	0.0	—	0.86	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	8UPT	42455	2024-04-05	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.005	0.73	0.0	0.04	27.91	0.01	2.113	22.27	0.00	0.0	0.0	0.0	—	0.95	0.28	0.87	—	1518	0	1	71	0	0	0	logfile
✔	8TJX	41313	2024-04-06	2023-07-24	2.44	3.10	2.65	2.9	0.006	0.64	0.0	0.04	24.81	0.01	1.872	12.24	0.00	0.0	0.0	0.0	—	0.85	0.85	—	2.9	0.007	0.61	0.0	0.04	24.05	0.01	1.838	11.47	0.00	0.0	0.0	0.0	—	0.81	0.84	0.86	—	7839	0	2	365	27	0	0	logfile
✔	8oTF	17177	2024-04-05	2023-04-20	3.3	3.19	3.03	3.4	0.010	1.53	0.0	0.10	16.15	0.01	2.614	4.72	4.35	6.9	93.1	0.0	-4.64	0.49	0.92	5.83	3.4	0.004	0.48	0.0	0.05	15.60	0.00	2.337	6.90	2.17	0.0	100.0	0.0	-0.61	0.48	0.43	0.89	5.83	1350	186	6	0	0	0	0	logfile
✔	8FAi	28957	2024-04-06	2022-11-27	3.0	2.58	3.05	2.7	0.007	1.38	0.0	0.03	29.18	0.00	2.395	4.13	0.00	0.0	100.0	0.0	3.16	0.53	0.80	3.27	2.6	0.004	0.62	0.0	0.04	22.62	0.00	2.131	5.97	7.08	0.0	100.0	0.0	3.22	2.70	0.54	0.83	1.94	7845	1020	25	0	15	0	0	logfile
✔	5G2Y	3332	2024-04-08	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	22.50	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.01	0.0	0.05	28.52	0.01	1.951	72.85	0.00	0.0	0.0	0.0	—	2.98	0.89	0.78	—	13494	0	1	630	0	0	0	logfile
✔	7RZQ	24774	2024-04-05	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.31	0.0	0.03	15.02	0.00	2.341	5.30	1.07	0.0	100.0	0.0	5.97	0.30	0.82	0.82	2.01	2421	322	6	0	0	0	0	logfile

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