Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UUQ	26800	2024-04-05	2022-04-28	3.1	3.45	2.98	3.3	0.018	1.82	0.0	0.06	18.29	0.01	1.865	20.35	0.00	0.0	100.0	0.0	-9.31	0.68	0.85	2.95	3.3	0.118	4.54	13.0	0.23	31.76	0.03	1.584	57.12	19.78	66.7	30.4	3.0	-10.84	0.67	0.73	0.90	3.59	4760	364	98	0	98	0	0	logfile
✔	8B3A	15824	2024-04-05	2022-09-16	3.8	3.66	2.91	4.1	0.009	1.88	0.0	0.10	27.06	0.09	2.613	1.89	0.00	0.0	100.0	0.0	-4.71	0.55	0.64	5.18	4.1	0.079	6.11	24.0	0.43	24.10	0.05	1.656	300.95	53.33	52.7	4.0	43.3	-10.74	2.56	0.43	0.58	3.10	2010	210	30	0	60	0	0	logfile
✔	7LQF	23484	2024-04-05	2021-02-13	3.8	3.13	—	4.0	0.016	1.46	0.0	0.03	18.37	0.00	2.258	22.81	2.08	0.0	100.0	0.0	-4.77	0.59	0.78	4.63	3.2	0.155	6.28	251.0	0.42	27.36	0.03	1.648	200.72	26.56	66.8	29.3	3.9	-9.78	2.03	0.69	0.87	2.76	5376	512	64	0	0	0	0	logfile
✔	7LQE	23483	2024-04-05	2021-02-13	3.4	3.06	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.423	23.27	14.58	0.0	100.0	0.0	-5.94	0.57	0.80	5.06	3.2	0.151	5.08	246.0	0.39	26.91	0.02	1.698	131.43	25.00	60.8	38.5	0.7	-8.74	1.57	0.65	0.90	1.60	6048	576	72	0	0	0	0	logfile
✔	6BWi	7299	2024-04-11	2017-12-15	3.7	3.76	—	3.7	0.011	1.39	4.0	0.09	12.18	0.01	1.745	22.56	1.36	8.1	91.5	0.4	-5.08	0.67	0.73	2.06	3.7	0.088	4.97	113.0	0.27	23.59	0.03	1.606	111.15	33.60	42.9	51.0	6.1	-8.57	2.57	0.80	0.87	1.61	23491	2484	8	0	813	0	0	logfile
✔	6S8F	10120	2024-04-15	2019-07-09	4.0	4.88	—	3.9	0.007	1.26	0.0	0.06	11.79	0.01	1.859	6.71	0.80	9.6	90.3	0.1	-4.38	0.88	0.77	—	3.9	0.042	2.90	46.0	0.11	19.41	0.02	1.505	190.57	33.05	54.0	43.4	2.6	-8.00	2.40	0.90	0.88	—	33664	3530	4	0	1616	0	0	logfile
✔	7LQG	23485	2024-04-08	2021-02-13	3.4	3.13	—	3.3	0.016	1.42	0.0	0.04	20.72	0.00	1.842	31.02	14.58	0.0	100.0	0.0	-5.94	0.61	0.81	5.57	3.2	0.110	4.32	163.0	0.30	24.12	0.02	1.769	115.03	20.14	35.2	64.8	0.0	-8.00	1.14	0.67	0.87	3.69	12096	1152	144	0	0	0	0	logfile
✔	8oKR	16930	2024-04-05	2023-03-29	2.86	3.36	2.66	3.4	0.007	1.56	0.0	0.09	22.91	0.01	1.489	4.96	0.00	0.0	100.0	0.0	-4.51	0.55	0.67	7.31	3.4	0.190	6.52	60.0	0.43	29.21	0.04	1.639	169.69	15.48	50.0	38.3	11.7	-7.72	2.21	0.63	0.89	1.62	1608	168	24	0	0	0	0	logfile
✔	8iKB	35508	2024-04-05	2023-02-28	3.71	3.37	3.27	3.6	0.009	4.38	45.0	0.34	11.37	0.00	1.899	43.20	0.00	2.9	97.1	0.0	-5.58	0.28	0.73	2.50	3.6	0.050	3.12	1.0	0.15	19.49	0.01	1.928	112.45	29.46	50.0	42.1	7.9	-7.72	1.63	0.32	0.85	3.87	1764	252	28	0	0	0	0	logfile
✔	3J9L	2871	2024-04-06	2015-02-04	4.0	4.10	—	4.0	0.022	1.96	105.0	0.12	19.79	0.01	1.058	81.48	27.30	10.5	88.6	0.9	-4.09	0.66	0.68	—	4.0	0.045	3.09	64.0	0.12	21.30	0.02	1.887	101.09	29.26	40.4	58.0	1.7	-7.66	2.88	0.73	0.82	—	112951	8688	31	0	8320	0	0	logfile
✔	8iK7	35505	2024-04-05	2023-02-28	3.69	3.48	3.31	3.6	0.009	3.75	27.0	0.34	10.51	0.00	1.936	29.98	0.00	13.7	86.3	0.0	-5.90	0.27	0.76	3.67	3.6	0.052	2.62	1.0	0.15	20.33	0.02	1.883	92.29	38.33	56.0	39.3	4.8	-7.63	1.63	0.34	0.87	3.53	1488	216	24	0	0	0	0	logfile
✔	7LQH	23486	2024-04-08	2021-02-13	3.4	3.12	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.098	31.15	14.58	0.0	100.0	0.0	-5.94	0.59	0.80	5.83	3.2	0.111	4.15	178.0	0.30	24.80	0.02	1.776	108.91	21.76	35.4	64.6	0.0	-7.62	3.47	0.65	0.87	3.27	12096	1152	144	0	0	0	0	logfile
✔	7K0S	22615	2024-04-07	2020-09-05	4.5	4.73	4.68	4.6	0.003	0.64	2.0	0.04	14.04	0.00	2.069	9.69	0.95	7.8	92.0	0.2	-0.12	0.80	0.73	—	4.6	0.043	3.17	236.0	0.13	17.13	0.02	1.379	136.31	0.01	44.3	52.3	3.4	-7.53	2.27	0.84	0.82	—	115935	12896	8	0	3557	0	0	logfile
✔	7K0T	22616	2024-04-07	2020-09-05	4.3	4.52	4.29	4.2	0.003	0.65	1.0	0.04	13.88	0.00	1.909	7.65	0.63	7.5	92.4	0.2	-0.19	0.84	0.76	—	4.2	0.036	2.69	57.0	0.11	15.92	0.02	0.366	109.75	0.00	43.4	55.0	1.6	-7.46	2.20	0.86	0.83	—	115905	12820	8	0	3608	0	0	logfile
✔	6oDY	20024	2024-04-13	2019-03-27	3.8	3.40	—	3.2	0.010	1.59	18.0	0.11	15.38	0.01	1.264	18.28	3.15	16.6	83.3	0.0	-5.02	0.66	0.62	1.16	3.2	0.030	3.05	8.0	0.14	21.28	0.02	1.723	103.98	28.40	37.4	61.2	1.4	-7.15	0.87	0.69	0.69	1.38	28116	2832	6	0	1326	0	0	logfile
✔	7UMZ	26610	2024-04-06	2022-04-08	3.09	3.37	3.21	3.3	0.004	0.87	0.0	0.04	17.67	0.01	2.198	7.00	2.38	6.1	93.3	0.6	-1.01	0.68	0.70	1.58	3.3	0.060	2.96	149.0	0.19	20.93	0.02	0.739	52.46	23.20	26.6	70.8	2.6	-6.91	1.64	0.75	0.86	2.22	111437	12516	12	0	3221	8	0	logfile
✔	8iKS	35520	2024-04-05	2023-03-01	3.75	3.73	3.52	3.2	0.018	4.07	8.0	0.24	18.13	0.00	1.885	50.36	0.00	8.3	91.7	0.0	-5.59	0.34	0.66	1.82	2.9	0.032	2.98	0.0	0.15	23.72	0.01	1.974	104.06	33.33	45.8	52.1	2.1	-6.90	1.67	0.35	0.69	0.93	1024	144	16	0	0	0	0	logfile
✔	7LQi	23487	2024-04-06	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.73	1.0	0.14	24.21	0.01	1.955	121.88	20.00	43.0	57.0	0.0	-6.80	1.44	0.64	0.85	2.89	8400	800	100	0	0	0	0	logfile
✔	8iKP	35519	2024-04-05	2023-02-28	2.98	2.59	2.85	3.0	0.013	1.99	2.0	0.05	15.08	0.00	1.973	20.34	0.00	15.6	84.4	0.0	-7.03	0.26	0.65	5.92	3.0	0.041	3.24	2.0	0.13	21.92	0.01	1.944	17.19	10.94	36.2	62.5	1.2	-6.50	2.02	0.32	0.77	3.34	2048	288	32	0	0	0	0	logfile
✔	6ZYD	11557	2024-04-15	2020-07-31	3.0	3.62	2.76	3.4	0.017	1.20	0.0	0.12	19.71	0.01	2.269	4.88	0.00	5.1	94.9	0.0	-3.12	0.75	0.77	4.36	3.4	0.059	2.56	0.0	0.17	20.87	0.02	1.761	56.86	14.22	21.7	78.3	0.0	-6.19	1.46	0.79	0.86	3.30	31423	1792	14	0	476	0	14490	logfile

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