Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HiZ	34830	2024-04-05	2022-11-22	3.08	3.26	2.97	3.2	0.004	0.70	0.0	0.04	16.64	0.00	2.324	14.33	0.30	2.9	97.1	0.0	1.51	0.40	0.77	2.44	3.2	0.003	0.63	0.0	0.04	16.53	0.00	2.132	13.40	1.52	4.1	95.9	0.0	0.88	1.06	0.40	0.80	2.29	3274	416	1	0	1	0	0	logfile
✔	7R18	14234	2024-04-12	2022-02-02	3.0	3.30	3.33	3.2	0.006	0.71	0.0	0.06	10.84	0.01	2.212	2.74	0.32	3.9	96.1	0.0	0.28	0.78	0.79	3.10	3.2	0.003	0.59	0.0	0.04	12.75	0.00	2.153	4.25	1.72	3.7	96.3	0.0	0.24	1.17	0.81	0.83	2.63	25773	3189	15	0	60	0	0	logfile
✔	6RLB	4918	2024-04-10	2019-05-01	4.5	4.85	4.49	4.3	0.007	0.95	0.0	0.06	4.70	0.00	2.082	0.71	0.00	4.0	95.9	0.0	-1.08	0.80	0.63	—	4.3	0.003	0.72	0.0	0.04	5.23	0.00	2.224	3.54	0.00	11.8	88.1	0.0	-0.71	1.83	0.86	0.66	—	20407	4122	14	0	0	0	0	logfile
✔	8HFS	34726	2024-04-09	2022-11-12	2.98	3.10	2.88	3.1	0.003	0.65	0.0	0.04	16.84	0.00	2.164	12.21	3.28	7.5	92.5	0.0	0.18	0.67	0.78	0.87	3.1	0.003	0.66	0.0	0.04	17.05	0.00	2.147	12.69	6.44	7.5	92.5	0.0	0.32	0.32	0.68	0.79	0.91	16216	1798	11	0	3	0	0	logfile
✔	6LMX	0923	2024-04-09	2019-12-26	3.4	3.53	3.23	3.5	0.019	1.32	0.0	0.07	15.24	0.01	2.161	4.67	1.26	2.1	97.9	0.0	-6.20	0.60	0.78	2.56	3.5	0.003	0.66	0.0	0.04	16.08	0.01	2.182	6.93	3.00	2.8	97.2	0.0	2.39	1.51	0.66	0.82	1.19	15588	2160	9	0	0	0	0	logfile
✔	7oRM	13042	2024-04-10	2021-06-06	3.3	3.39	—	3.4	0.004	0.70	1.0	0.05	14.43	0.00	2.004	6.24	0.20	3.2	96.8	0.0	0.73	0.82	0.85	2.64	3.4	0.004	0.54	0.0	0.04	15.65	0.00	1.932	7.40	1.11	3.4	96.6	0.0	1.26	0.36	0.82	0.87	2.37	18369	2145	4	40	2	0	0	logfile
✔	7YPB	33998	2024-04-12	2022-08-03	3.48	3.51	3.48	3.5	0.003	0.57	0.0	0.04	14.29	0.00	2.184	2.96	0.04	2.8	97.2	0.0	-4.01	0.71	0.72	1.57	3.5	0.005	0.65	0.0	0.04	17.08	0.00	1.953	9.07	2.70	4.3	95.7	0.0	-0.67	1.29	0.78	0.83	1.93	25626	3133	10	55	3	0	0	logfile
✔	8HHo	34805	2024-04-05	2022-11-16	3.2	3.36	3.02	3.3	0.005	0.76	0.0	0.05	15.65	0.01	2.169	14.02	0.30	2.2	97.8	0.0	1.56	0.46	0.78	2.53	3.3	0.003	0.58	0.0	0.04	16.31	0.00	2.137	14.64	2.42	2.4	97.6	0.0	1.54	0.39	0.47	0.80	2.08	3274	416	1	0	1	0	0	logfile
✔	6RMG	4936	2024-04-10	2019-05-06	3.4	3.70	—	3.6	0.011	1.45	0.0	0.08	13.22	0.01	2.042	4.20	0.10	8.7	91.3	0.0	-3.98	0.72	0.80	3.37	3.6	0.003	0.62	0.0	0.04	13.51	0.00	1.878	11.13	1.60	7.5	92.5	0.0	0.40	0.82	0.77	0.86	2.79	19137	1176	5	0	19	0	9327	logfile
✔	7R15	14231	2024-04-11	2022-02-02	4.1	4.52	4.27	4.3	0.004	0.57	0.0	0.05	14.18	0.00	2.099	11.10	0.00	6.2	93.8	0.0	-0.90	0.86	0.84	—	4.3	0.005	0.63	0.0	0.05	13.74	0.00	2.125	12.66	0.08	6.5	93.5	0.0	-0.94	0.35	0.85	0.84	—	24100	3000	9	0	43	0	0	logfile
✔	6LZ1	30021	2024-04-15	2020-02-17	3.2	3.36	3.57	3.3	0.005	0.61	0.0	0.05	15.47	0.00	2.099	11.03	2.52	7.7	92.3	0.0	-3.40	0.87	0.86	3.56	3.3	0.004	0.58	0.0	0.04	16.42	0.00	2.050	10.47	3.68	6.7	93.3	0.0	-1.44	0.33	0.86	0.87	3.49	34492	4304	8	0	4	0	0	logfile
✔	8H77	34519	2024-04-09	2022-10-19	3.2	2.74	3.17	3.1	0.005	0.84	0.0	0.05	15.36	0.00	1.365	13.60	0.12	5.1	94.9	0.0	-1.57	0.59	0.67	2.51	3.1	0.003	0.62	0.0	0.04	17.52	0.00	1.017	9.81	2.37	3.7	96.3	0.0	-0.56	0.65	0.69	0.76	2.18	15726	1930	8	0	4	0	0	logfile
✔	6YKM	10828	2024-04-07	2020-04-06	3.1	3.19	2.97	3.2	0.009	1.07	0.0	0.06	11.10	0.01	2.256	4.12	0.00	3.0	97.0	0.0	-4.68	0.68	0.86	4.14	3.2	0.003	0.59	0.0	0.04	14.78	0.00	2.156	9.09	1.81	2.5	97.5	0.0	1.00	1.06	0.68	0.88	2.45	10434	1357	10	0	0	8	0	logfile
✔	8HJ9	34835	2024-04-05	2022-11-22	3.12	3.29	3.00	3.2	0.004	0.65	0.0	0.04	16.74	0.00	2.234	10.94	0.00	2.7	97.3	0.0	1.80	0.43	0.76	3.45	3.2	0.002	0.49	0.0	0.04	16.17	0.00	2.217	11.09	1.82	2.9	97.1	0.0	1.75	1.99	0.43	0.78	2.83	3274	416	1	0	1	0	0	logfile
✔	6RBG	4798	2024-04-10	2019-04-10	3.0	3.55	—	3.4	0.004	0.89	0.0	0.05	14.50	0.00	2.407	3.44	0.38	2.0	98.0	0.0	-6.39	0.67	0.80	3.37	3.4	0.002	0.64	0.0	0.04	17.20	0.00	2.322	4.56	2.04	1.3	98.7	0.0	0.47	0.54	0.72	0.85	2.35	19336	2464	8	0	0	0	0	logfile
✔	7oRJ	13039	2024-04-10	2021-06-06	3.9	3.52	—	3.6	0.006	0.80	0.0	0.05	14.65	0.00	2.203	8.52	0.71	3.3	96.7	0.0	0.20	0.77	0.77	1.81	3.6	0.002	0.52	0.0	0.04	15.79	0.00	2.148	10.05	1.27	2.9	97.1	0.0	0.56	1.67	0.78	0.78	1.57	18197	2129	5	35	3	0	0	logfile
✔	7XGY	33189	2024-04-05	2022-04-07	3.5	3.46	3.56	3.3	0.008	1.16	0.0	0.06	16.48	0.01	2.307	9.06	2.17	6.4	93.6	0.0	-3.05	0.78	0.73	2.38	3.3	0.004	0.81	0.0	0.05	18.06	0.01	2.027	19.11	5.21	5.5	94.5	0.0	0.99	1.11	0.78	0.73	1.22	4555	574	8	0	4	0	0	logfile
✔	6TFK	10493	2024-04-17	2019-11-14	2.9	3.06	2.94	3.1	0.002	0.47	0.0	0.04	9.64	0.00	1.917	7.45	0.24	9.1	90.9	0.0	-2.49	0.72	0.77	2.62	3.0	0.003	0.56	0.0	0.04	13.84	0.00	1.920	7.66	1.87	6.7	93.2	0.1	-0.77	0.72	0.72	0.79	2.42	43237	2724	5	0	1	0	21544	logfile
✔	7NV0	12601	2024-04-07	2021-03-15	3.4	2.96	—	2.9	0.011	1.13	0.0	0.06	19.87	0.01	2.205	8.09	1.30	8.1	91.9	0.0	-4.56	0.60	0.68	2.36	2.9	0.003	0.66	0.0	0.04	20.69	0.00	2.109	12.00	3.36	2.0	98.0	0.0	-1.08	0.65	0.58	0.69	1.96	9928	1180	7	53	1	0	0	logfile
✔	6ZY3	11548	2024-04-09	2020-07-30	3.3	3.38	—	3.4	0.003	0.70	0.0	0.04	13.13	0.00	2.332	3.15	0.18	4.8	95.2	0.0	-5.92	0.66	0.74	1.69	3.4	0.004	0.65	0.0	0.04	15.35	0.00	2.094	6.49	2.48	6.1	93.9	0.0	-1.16	1.23	0.70	0.84	1.77	15770	2071	12	0	1	0	0	logfile

• Page 1 of 610
• next →