Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PBZ	13314	2024-04-09	2021-08-03	2.79	3.47	2.89	3.2	0.004	0.77	0.0	0.12	15.13	0.01	2.136	4.25	0.00	2.9	97.1	0.0	0.33	0.75	0.86	5.20	3.2	0.003	0.61	0.0	0.04	14.74	0.00	2.095	6.41	1.59	2.4	97.6	0.0	0.88	0.42	0.76	0.88	4.70	14822	1773	17	0	37	0	0	logfile
✔	7LS9	23506	2024-04-14	2021-02-17	3.42	3.90	3.53	3.8	0.005	0.89	9.0	0.06	12.84	0.01	2.232	4.37	0.00	3.0	97.0	0.0	-0.75	0.81	0.75	2.14	3.8	0.003	0.60	0.0	0.04	13.65	0.00	2.213	8.65	2.32	2.7	97.3	0.0	0.05	2.21	0.85	0.82	2.10	32226	4002	33	0	75	0	0	logfile
✔	7KMS	22927	2024-04-16	2020-11-03	3.64	4.47	3.77	3.7	0.003	0.50	0.0	0.04	13.85	0.00	2.079	3.36	0.00	4.3	95.7	0.0	0.04	0.86	0.79	1.47	3.7	0.003	0.58	0.0	0.04	14.70	0.00	2.140	11.74	0.64	5.3	94.7	0.0	-0.37	0.45	0.88	0.83	1.36	39677	4887	20	0	71	0	0	logfile
✔	6SGZ	10191	2024-04-07	2019-08-05	3.9	4.15	—	4.0	0.003	0.70	0.0	0.04	13.52	0.00	2.203	12.28	0.00	10.3	89.4	0.3	-4.16	0.66	0.82	1.40	4.0	0.003	0.74	0.0	0.04	15.51	0.00	2.148	13.20	3.93	9.7	90.2	0.1	-0.41	1.22	0.65	0.82	1.34	11177	1505	5	0	0	0	0	logfile
✔	7N95	24250	2024-04-06	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.004	1.01	0.0	0.00	4.97	0.00	2.503	6.53	0.00	18.1	81.7	0.2	-3.27	1.81	0.85	0.83	—	7299	2433	2	0	0	0	0	logfile
✔	7TBF	25797	2024-04-06	2021-12-21	3.1	3.60	3.16	3.4	0.008	0.87	0.0	0.05	13.38	0.01	2.064	6.47	0.00	14.9	84.6	0.5	-3.53	0.83	0.81	3.20	3.4	0.004	0.74	0.0	0.04	15.30	0.00	2.226	8.39	3.58	14.2	85.3	0.5	-2.51	0.99	0.84	0.85	2.79	6617	857	6	0	2	0	0	logfile
✔	7N9Q	24259	2024-04-06	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.00	0.0	0.00	5.05	0.00	2.580	6.76	0.00	12.3	86.7	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	8DRQ	27681	2024-04-05	2022-07-21	4.16	4.28	4.60	4.1	0.004	0.89	0.0	0.05	15.60	0.01	2.283	15.85	0.00	5.9	94.1	0.0	-3.30	0.39	0.56	—	4.1	0.004	0.83	0.0	0.05	13.36	0.01	2.086	24.08	0.00	7.7	92.3	0.0	-2.83	1.99	0.42	0.56	—	3321	407	1	0	0	0	0	logfile
✔	7TN9	26005	2024-04-11	2022-01-20	3.1	3.89	3.15	3.6	0.006	0.86	0.0	0.05	14.20	0.01	2.024	18.34	0.00	2.7	97.3	0.1	0.46	0.77	0.82	3.05	3.6	0.004	0.71	0.0	0.04	14.65	0.00	2.134	14.94	2.33	3.7	96.3	0.0	-0.35	0.46	0.77	0.83	2.82	22621	2874	28	0	26	0	0	logfile
✔	7NVV	12614	2024-04-06	2021-03-16	2.9	3.23	2.79	3.1	0.003	0.52	0.0	0.04	17.44	0.00	1.984	3.96	0.00	2.7	97.3	0.0	1.30	0.74	0.80	3.40	3.1	0.004	0.68	0.0	0.04	20.13	0.00	1.932	11.33	2.77	3.3	96.7	0.0	-0.08	0.67	0.72	0.83	3.19	9071	975	9	50	27	0	0	logfile
✔	7PKS	13479	2024-04-15	2021-08-26	3.6	4.27	3.31	2.8	0.004	0.78	0.0	0.05	14.55	0.01	1.638	5.38	0.00	4.0	95.9	0.0	-0.87	0.76	0.62	1.06	2.8	0.003	0.63	0.0	0.04	15.50	0.00	2.047	12.31	0.67	3.8	96.1	0.0	1.21	1.57	0.85	0.81	1.05	101147	13139	41	74	118	0	0	logfile
✔	8DZR	27806	2024-04-06	2022-08-08	2.61	2.15	2.73	2.0	0.005	0.70	0.0	0.05	13.75	0.00	2.224	4.85	0.00	3.3	96.7	0.0	-0.09	0.76	0.74	3.46	1.9	0.004	0.61	0.0	0.04	15.79	0.00	2.092	9.31	2.49	4.1	95.9	0.0	0.52	0.32	0.78	0.79	3.22	7944	1073	6	0	1	0	0	logfile
✔	8EKC	28197	2024-04-16	2022-09-20	2.7	3.48	2.73	3.0	0.008	0.76	0.0	0.04	22.20	0.02	1.894	3.55	0.00	4.1	95.9	0.0	-1.10	0.88	0.84	3.57	3.0	0.005	0.71	0.0	0.04	22.22	0.01	1.757	7.07	3.63	4.1	95.9	0.0	-0.07	0.44	0.91	0.92	2.95	144544	5558	88	4655	719	300	0	logfile
✔	8HAN	34597	2024-04-09	2022-10-26	4.2	4.31	4.16	3.4	0.003	0.54	0.0	0.03	24.99	0.00	2.219	8.41	0.00	1.1	98.9	0.0	2.88	0.83	0.72	—	2.9	0.004	0.61	0.0	0.04	26.40	0.00	2.156	16.96	0.00	2.5	97.5	0.0	2.19	0.80	0.86	0.80	—	16180	1261	11	294	0	0	0	logfile
✔	7X0Z	32930	2024-04-07	2022-02-22	2.96	3.20	—	3.2	0.007	0.79	0.0	0.04	14.78	0.00	1.974	7.24	0.00	4.8	95.2	0.0	0.45	0.65	0.84	3.46	3.2	0.003	0.54	0.0	0.04	17.03	0.00	1.945	6.33	1.85	4.0	96.0	0.0	1.11	0.91	0.66	0.86	2.89	9285	1156	4	0	4	0	0	logfile
✔	7UoT	26653	2024-04-12	2022-04-13	2.77	3.42	2.87	3.2	0.006	0.86	0.0	0.06	20.95	0.01	2.199	5.42	0.00	4.9	95.1	0.0	0.38	0.85	0.87	4.33	3.2	0.004	0.72	0.0	0.05	15.23	0.00	2.157	6.42	1.95	5.7	94.3	0.0	0.49	0.38	0.83	0.89	3.86	16834	1956	47	0	116	0	0	logfile
✔	7MLZ	23914	2024-04-05	2021-04-29	3.71	4.27	3.83	3.9	0.004	0.82	0.0	0.05	14.73	0.01	2.150	18.13	0.00	17.4	82.5	0.2	-4.08	0.80	0.62	1.39	3.9	0.003	0.77	0.0	0.05	14.58	0.00	2.104	15.84	1.68	15.6	84.3	0.2	-3.96	0.56	0.81	0.63	0.97	4864	624	4	0	5	0	0	logfile
✔	7QP9	14115	2024-04-07	2022-01-03	2.89	3.12	2.88	3.2	0.004	0.63	0.0	0.04	15.53	0.00	2.249	6.44	0.00	3.6	96.4	0.0	2.00	0.58	0.81	3.64	3.2	0.004	0.50	0.0	0.04	16.52	0.00	2.123	10.43	0.54	3.3	96.7	0.0	1.97	0.72	0.56	0.83	3.78	11087	654	6	0	4	127	5668	logfile
✔	7UoV	26655	2024-04-13	2022-04-14	2.75	3.42	2.84	3.2	0.005	0.82	0.0	0.05	20.50	0.00	2.171	6.87	0.00	4.7	95.3	0.0	0.15	0.85	0.85	3.77	3.2	0.003	0.72	0.0	0.04	15.06	0.00	2.170	8.09	2.26	5.0	95.0	0.0	0.24	0.79	0.80	0.83	3.94	19757	2304	51	0	127	0	0	logfile
✔	7KMB	22922	2024-04-06	2020-11-02	3.39	3.84	3.64	3.7	0.004	0.74	0.0	0.05	14.63	0.00	2.298	3.86	0.00	4.8	95.2	0.0	-3.57	0.77	0.80	1.91	3.7	0.003	0.64	0.0	0.04	15.85	0.00	2.164	11.34	2.32	4.0	96.0	0.0	-0.73	1.14	0.79	0.82	1.81	6509	788	5	0	9	0	0	logfile

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