Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UUQ	26800	2024-04-05	2022-04-28	3.1	3.45	2.98	3.3	0.018	1.82	0.0	0.06	18.29	0.01	1.865	20.35	0.00	0.0	100.0	0.0	-9.31	0.68	0.85	2.95	3.3	0.118	4.54	13.0	0.23	31.76	0.03	1.584	57.12	19.78	66.7	30.4	3.0	-10.84	0.67	0.73	0.90	3.59	4760	364	98	0	98	0	0	logfile
✔	7DA4	30622	2024-04-05	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.98	0.0	0.04	11.88	0.00	2.201	17.17	0.00	25.0	75.0	0.0	-5.95	3.06	0.36	0.60	—	507	66	3	0	0	0	0	logfile
✔	3J2P	5499	2024-04-07	2012-11-30	3.6	3.28	—	3.4	0.010	1.92	0.0	0.12	17.50	0.02	2.155	110.32	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.004	0.91	0.0	0.04	18.21	0.00	1.845	75.71	11.64	20.8	75.4	3.8	-4.38	0.84	0.39	0.73	1.07	9890	1134	8	0	6	0	1086	logfile
✔	7V49	31704	2024-04-05	2021-08-12	3.4	3.45	—	4.1	0.007	1.01	0.0	0.06	13.70	0.00	2.279	22.06	0.00	39.7	60.3	0.0	-7.67	0.33	0.73	5.03	4.1	0.003	0.75	0.0	0.05	14.90	0.00	2.443	8.42	4.88	14.9	85.1	0.0	-5.73	1.14	0.31	0.69	5.16	1221	180	3	0	0	0	0	logfile
✔	7DWV	30887	2024-04-05	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.258	16.67	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.004	0.78	0.0	0.05	17.73	0.00	2.189	18.12	19.05	23.6	76.4	0.0	-6.14	1.49	0.41	0.75	2.77	2064	258	6	0	0	0	0	logfile
✔	8H40	34476	2024-04-15	2022-10-09	3.6	4.14	3.56	3.3	0.059	3.51	163.0	0.18	20.66	0.02	0.727	175.67	4.55	35.8	60.4	3.8	-7.43	0.85	0.79	0.76	3.3	0.004	0.94	0.0	0.05	20.72	0.01	1.897	22.17	3.19	11.8	87.6	0.6	-2.66	1.95	0.87	0.81	0.98	34833	4130	11	120	0	0	0	logfile
✔	7CYE	30498	2024-04-06	2020-09-03	3.54	3.31	—	3.7	0.010	1.42	0.0	0.07	12.31	0.01	2.232	4.09	1.30	12.4	87.0	0.6	-7.38	0.56	0.76	2.20	3.7	0.003	0.88	0.0	0.04	15.07	0.01	2.129	8.05	2.86	10.5	89.5	0.0	-2.42	0.83	0.59	0.81	2.19	7263	978	3	0	0	0	0	logfile
✔	7BSP	30163	2024-04-07	2020-03-31	4.0	4.12	—	4.0	0.005	0.66	0.0	0.04	15.68	0.01	1.928	53.93	0.00	14.6	85.4	0.0	-7.27	0.68	0.87	—	4.0	0.003	0.74	0.0	0.04	16.13	0.00	2.196	12.75	3.16	7.2	92.8	0.0	-2.61	0.62	0.68	0.86	—	11010	1352	5	0	5	0	0	logfile
✔	3J06	5185	2024-04-07	2011-04-26	3.3	2.88	—	3.5	0.011	2.34	441.0	0.15	21.60	0.01	1.607	79.64	14.71	21.1	65.4	13.5	-7.24	0.56	0.80	1.90	3.2	0.005	0.99	6.0	0.05	21.31	0.01	1.530	17.41	7.20	8.1	90.0	1.9	-2.56	1.23	0.56	0.79	1.87	62916	7595	98	147	0	0	0	logfile
✔	6N1H	8902	2024-04-07	2018-11-08	3.17	3.22	—	3.2	0.006	1.13	0.0	0.06	12.23	0.01	0.657	32.07	3.97	7.4	92.6	0.0	-7.22	0.39	0.46	0.05	3.2	0.003	0.71	0.0	0.04	16.80	0.00	2.184	11.28	1.61	6.7	93.3	0.0	0.82	3.97	0.63	0.84	1.86	10991	1328	16	0	0	0	0	logfile
✔	8GQY	34203	2024-04-07	2022-08-31	3.4	2.82	3.40	3.6	0.005	0.66	0.0	0.04	12.58	0.00	2.117	7.22	5.67	3.6	96.4	0.0	-7.14	0.69	0.86	3.37	3.6	0.003	0.64	0.0	0.04	15.24	0.00	2.166	7.01	3.78	1.9	98.1	0.0	-0.71	1.38	0.66	0.86	2.02	9515	1265	5	0	0	0	0	logfile
✔	7D61	30587	2024-04-12	2020-09-28	2.8	2.98	—	3.0	0.003	0.77	0.0	0.04	16.50	0.01	2.340	1.83	0.00	2.4	97.6	0.0	-7.13	0.69	0.82	2.59	3.0	0.003	0.63	0.0	0.04	17.88	0.00	2.228	3.71	2.11	1.9	98.1	0.0	-0.05	0.53	0.69	0.83	1.42	26664	3168	22	0	55	0	0	logfile
✔	6o9J	0661	2024-04-15	2019-03-14	3.9	3.92	—	3.9	0.006	1.25	25.0	0.10	24.37	0.01	0.154	55.29	23.17	26.6	58.7	14.7	-7.10	0.74	0.66	0.16	3.9	0.011	1.15	6.0	0.05	24.09	0.01	1.282	34.98	8.65	25.0	72.2	2.9	-4.91	1.31	0.80	0.77	0.18	142682	5731	53	4564	0	0	0	logfile
✔	6RJU	4906	2024-04-05	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.9	0.003	0.66	0.0	0.03	15.97	0.00	2.278	7.54	1.01	7.0	93.0	0.0	-0.88	1.30	0.30	0.04	1.02	1992	131	1	0	0	0	997	logfile
✔	6HQE	0252	2024-04-07	2018-09-24	4.4	4.34	—	4.4	0.009	1.25	0.0	0.06	9.67	0.01	2.307	6.79	0.00	4.8	95.2	0.0	-7.05	0.65	0.85	—	4.4	0.003	0.72	0.0	0.04	12.00	0.01	2.231	16.72	0.00	3.4	96.6	0.0	0.94	1.01	0.64	0.83	—	9360	1196	52	0	0	0	0	logfile
✔	8iKP	35519	2024-04-05	2023-02-28	2.98	2.59	2.85	3.0	0.013	1.99	2.0	0.05	15.08	0.00	1.973	20.34	0.00	15.6	84.4	0.0	-7.03	0.26	0.65	5.92	3.0	0.041	3.24	2.0	0.13	21.92	0.01	1.944	17.19	10.94	36.2	62.5	1.2	-6.50	2.02	0.32	0.77	3.34	2048	288	32	0	0	0	0	logfile
✔	7D65	30589	2024-04-12	2020-09-29	2.94	3.09	—	3.2	0.008	0.94	0.0	0.05	16.96	0.01	2.328	1.94	0.14	4.3	95.7	0.0	-7.00	0.66	0.81	2.37	3.2	0.002	0.63	0.0	0.04	17.31	0.00	2.180	4.71	2.18	1.9	98.1	0.0	-0.11	0.51	0.68	0.83	1.55	26664	3168	22	0	55	0	0	logfile
✔	7XQ2	33389	2024-04-05	2022-05-06	3.3	3.45	3.15	3.5	0.007	0.79	1.0	0.05	16.92	0.01	2.244	6.48	0.85	3.7	96.3	0.0	-6.96	0.56	0.83	4.29	3.5	0.003	0.57	0.0	0.04	16.70	0.00	2.241	7.36	0.85	3.2	96.8	0.0	0.49	1.11	0.45	0.78	3.59	3377	409	1	0	2	0	0	logfile
✔	6PW5	20499	2024-04-12	2019-07-22	3.45	3.53	—	3.5	0.013	1.39	0.0	0.07	14.62	0.01	2.327	4.42	1.61	11.6	87.6	0.8	-6.95	0.76	0.85	3.30	3.5	0.005	0.78	0.0	0.04	16.71	0.00	2.125	10.03	3.63	10.1	89.6	0.4	-1.49	1.16	0.76	0.87	2.23	24740	3032	8	0	12	0	0	logfile
✔	7D60	30586	2024-04-12	2020-09-28	2.61	2.73	—	2.7	0.006	0.89	0.0	0.05	16.89	0.01	2.395	1.56	0.00	2.1	97.9	0.0	-6.95	0.70	0.83	2.76	2.7	0.003	0.60	0.0	0.04	17.94	0.00	2.197	3.13	2.18	1.8	98.2	0.0	0.91	0.49	0.69	0.84	2.11	26664	3168	22	0	55	0	0	logfile

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