Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WV5	37865	2024-09-27	2023-10-23	3.5	3.56	3.55	3.6	0.002	0.47	0.0	0.04	12.21	0.00	1.812	6.94	0.00	1.6	98.4	0.0	-3.38	0.81	0.85	3.23	3.5	0.004	0.67	0.0	0.05	15.19	0.00	2.207	7.28	2.00	2.5	97.5	0.0	-1.24	1.65	0.82	0.88	3.38	16340	2060	20	0	20	0	0	logfile
✔	8UPY	42457	2024-09-23	2023-10-23	2.8	3.43	3.00	2.9	0.012	1.65	0.0	0.12	28.73	0.01	1.040	88.62	0.00	0.0	0.0	0.0	—	0.18	0.52	—	2.9	0.006	0.78	0.0	0.04	27.49	0.01	2.036	25.14	0.00	0.0	0.0	0.0	—	1.07	0.22	0.75	—	1532	0	1	72	0	0	0	logfile
✔	8UPX	42456	2024-09-29	2023-10-23	3.4	4.02	3.51	3.8	0.004	0.66	0.0	0.05	18.28	0.00	2.118	7.65	0.20	6.6	93.3	0.1	-0.97	0.83	0.81	2.09	3.8	0.005	0.69	0.0	0.05	15.95	0.00	2.454	6.02	1.05	7.0	93.0	0.0	-0.60	0.37	0.83	0.84	2.16	23232	2904	18	0	38	0	0	logfile
✔	8UPT	42455	2024-09-23	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.73	0.0	0.04	27.67	0.01	2.090	18.78	0.00	0.0	0.0	0.0	—	0.98	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✔	8WV4	37864	2024-09-24	2023-10-23	3.3	3.25	3.29	3.3	0.002	0.49	0.0	0.04	14.13	0.00	1.938	5.08	3.33	1.0	99.0	0.0	-2.63	0.74	0.84	4.40	3.3	0.003	0.58	0.0	0.05	15.18	0.00	2.321	6.26	1.78	2.2	97.8	0.0	-0.85	1.17	0.75	0.86	3.88	8170	1030	10	0	10	0	0	logfile
✔	8UQ6	42462	2024-09-25	2023-10-23	3.6	5.71	2.81	39.0	0.016	2.36	10.0	0.13	16.35	0.02	2.502	1.87	5.96	23.5	71.6	4.9	-4.36	0.19	0.00	0.38	5.5	0.004	0.87	0.0	0.05	16.60	0.01	2.351	7.50	2.38	20.0	79.5	0.5	-3.96	2.37	0.22	0.15	0.07	11700	765	1	0	0	0	5689	logfile
✔	8UPF	42446	2024-09-28	2023-10-22	3.2	3.76	3.25	3.6	0.007	0.65	0.0	0.04	26.92	0.00	1.329	10.34	0.47	4.3	95.7	0.0	-2.24	0.79	0.83	2.25	3.6	0.003	0.59	0.0	0.03	26.59	0.00	2.124	7.96	1.28	3.0	97.0	0.0	1.82	0.46	0.77	0.82	1.54	14012	1006	13	293	2	0	0	logfile
✔	8WUW	37862	2024-09-27	2023-10-21	2.6	3.26	2.77	3.0	0.002	0.58	0.0	0.04	17.05	0.00	2.007	7.82	1.18	2.5	97.5	0.0	1.36	0.83	0.83	2.94	3.0	0.003	0.64	0.0	0.04	16.39	0.00	1.988	7.38	1.89	2.7	97.3	0.0	1.37	1.57	0.84	0.90	2.37	64841	8540	42	0	35	0	0	logfile
✔	8WUU	37860	2024-09-27	2023-10-21	3.2	4.23	3.27	3.3	0.006	0.58	0.0	0.04	20.53	0.00	2.145	6.59	0.00	2.5	97.5	0.0	1.21	0.81	0.61	2.37	3.3	0.005	0.54	0.0	0.04	20.35	0.00	2.490	8.19	1.53	2.8	97.2	0.0	1.11	0.67	0.91	0.88	1.93	14563	1313	5	181	0	0	0	logfile
✔	8WUX	37863	2024-09-26	2023-10-21	2.6	3.34	2.85	3.1	0.003	0.63	0.0	0.04	16.06	0.00	2.017	6.83	1.06	2.4	97.5	0.1	0.85	0.84	0.89	3.12	3.0	0.003	0.68	0.0	0.04	15.52	0.00	2.083	7.33	1.70	2.6	97.3	0.1	1.30	0.41	0.84	0.90	2.57	61026	8050	35	0	35	0	0	logfile
✔	8WUA	37852	2024-09-23	2023-10-20	3.6	4.37	3.76	4.3	0.004	0.75	0.0	0.04	15.35	0.01	2.105	8.78	0.49	5.8	94.2	0.0	0.31	0.49	0.58	0.41	4.3	0.003	0.74	0.0	0.04	16.95	0.00	2.577	8.87	2.96	6.1	93.9	0.0	0.48	1.82	0.54	0.69	1.15	5494	675	1	0	0	0	0	logfile
✔	8WUC	37853	2024-09-27	2023-10-20	2.5	3.09	2.46	2.9	0.004	0.67	0.0	0.04	16.60	0.00	1.940	9.89	1.01	1.5	98.5	0.0	0.80	0.84	0.87	2.89	2.9	0.004	0.78	0.0	0.05	16.63	0.00	1.919	9.19	1.36	1.7	98.3	0.0	0.94	0.43	0.86	0.90	2.58	65338	8708	42	0	28	0	0	logfile
✔	8UoY	42441	2024-09-26	2023-10-20	3.4	3.52	3.51	3.4	0.016	2.25	10.0	0.11	17.12	0.02	2.532	0.83	6.89	12.1	85.3	2.6	-3.89	0.21	0.24	0.07	3.4	0.003	0.74	0.0	0.04	17.61	0.00	2.251	11.83	6.01	10.6	89.2	0.2	-3.21	0.86	0.22	0.25	0.30	13188	872	2	0	0	0	6544	logfile
✔	8WU4	37850	2024-09-25	2023-10-20	3.3	3.97	3.44	3.7	0.002	0.53	0.0	0.04	13.98	0.00	2.254	7.48	0.09	0.7	99.3	0.0	1.79	0.90	0.89	1.51	3.7	0.003	0.53	0.0	0.04	14.88	0.00	2.614	7.94	1.90	1.2	98.8	0.0	1.90	0.27	0.91	0.90	1.41	54670	7364	14	0	0	0	0	logfile
✔	8UoP	42435	2024-09-26	2023-10-20	3.8	3.97	3.89	3.8	0.005	0.91	0.0	0.04	16.45	0.01	1.954	17.97	0.73	15.7	83.6	0.7	-3.60	0.18	0.15	0.40	3.9	0.003	0.65	0.0	0.04	17.06	0.00	2.263	11.38	3.37	12.6	87.1	0.3	-3.11	0.92	0.24	0.23	0.07	13188	872	2	0	0	0	6544	logfile
✔	8UP1	42442	2024-09-24	2023-10-20	4.55	3.74	4.59	4.7	0.009	1.48	0.0	0.06	6.87	0.01	2.606	0.00	0.00	1.5	98.5	0.0	0.31	0.79	0.80	—	4.7	0.005	0.81	0.0	0.04	5.64	0.00	2.032	5.91	0.00	8.1	91.9	0.0	1.79	2.25	0.81	0.84	—	7088	1428	4	0	0	0	0	logfile
✔	8WUi	37855	2024-09-27	2023-10-20	3.4	3.66	3.48	3.7	0.006	0.84	0.0	0.05	19.52	0.01	1.049	21.56	5.09	6.2	93.0	0.7	-1.15	0.56	0.68	1.43	3.7	0.003	0.70	0.0	0.04	18.47	0.00	2.524	11.89	3.19	5.0	94.5	0.4	-0.06	0.71	0.57	0.76	1.45	15340	1826	8	0	14	0	0	logfile
✔	8Uo3	42426	2024-09-24	2023-10-19	3.5	3.84	3.61	3.8	0.006	0.87	0.0	0.06	14.93	0.01	2.246	6.81	0.20	3.0	97.0	0.0	0.16	0.67	0.84	2.66	3.8	0.003	0.53	0.0	0.04	14.45	0.00	2.015	3.61	1.58	3.1	96.9	0.0	0.44	0.94	0.67	0.84	2.92	6650	977	6	0	3	0	0	logfile
✔	8UNP	42412	2024-09-24	2023-10-19	3.3	3.63	3.39	3.6	0.006	0.80	0.0	0.04	13.79	0.00	2.207	6.73	0.00	1.9	98.1	0.0	0.82	0.65	0.87	3.59	3.6	0.002	0.50	0.0	0.04	15.26	0.00	2.508	2.96	1.37	1.2	98.8	0.0	1.46	1.28	0.64	0.87	2.41	6559	906	6	0	2	1	0	logfile
✔	8UNX	42420	2024-09-24	2023-10-19	3.6	3.87	3.64	3.9	0.006	0.96	0.0	0.06	13.81	0.01	2.177	5.50	0.00	2.3	97.7	0.0	1.34	0.63	0.82	2.78	3.9	0.003	0.55	0.0	0.04	14.69	0.00	2.500	3.69	1.34	1.5	98.5	0.0	1.73	0.43	0.65	0.84	2.04	6688	923	6	0	2	0	0	logfile

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